Wall clock time and date at job start Tue Mar 31 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47156 * 2 1 4 4 C 1.53003 * 109.47092 * 119.99845 * 2 1 3 5 5 C 1.53000 * 109.46970 * 185.00305 * 4 2 1 6 6 C 1.50698 * 109.47234 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00485 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99968 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00394 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47310 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47438 * 119.99449 * 10 8 6 13 13 H 1.48505 * 109.47446 * 239.99879 * 10 8 6 14 14 N 1.46893 * 109.47308 * 239.99882 * 2 1 3 15 15 C 1.46900 * 111.00054 * 84.99715 * 14 2 1 16 16 H 1.09001 * 109.47592 * 325.00587 * 15 14 2 17 17 C 1.53003 * 109.46815 * 85.00395 * 15 14 2 18 18 O 1.42897 * 109.47381 * 64.99872 * 17 15 14 19 19 C 1.50699 * 109.47452 * 204.99991 * 15 14 2 20 20 C 1.38247 * 119.97465 * 319.72965 * 19 15 14 21 21 C 1.38190 * 120.02973 * 180.27547 * 20 19 15 22 22 C 1.38466 * 119.97055 * 359.97438 * 21 20 19 23 23 F 1.35097 * 120.02197 * 179.97438 * 22 21 20 24 24 C 1.38454 * 119.94878 * 0.02562 * 22 21 20 25 25 C 1.38192 * 119.97677 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46978 * 299.99922 * 1 2 3 28 28 H 1.08995 * 109.47173 * 60.00154 * 1 2 3 29 29 H 1.09004 * 109.47283 * 304.99736 * 4 2 1 30 30 H 1.08994 * 109.47120 * 64.99957 * 4 2 1 31 31 H 1.09001 * 109.47006 * 299.99427 * 5 4 2 32 32 H 1.09001 * 109.47267 * 60.00171 * 5 4 2 33 33 H 0.96996 * 120.00554 * 180.02562 * 9 8 6 34 34 H 1.00905 * 111.00098 * 208.95421 * 14 2 1 35 35 H 1.09000 * 109.46890 * 185.00193 * 17 15 14 36 36 H 1.09001 * 109.47342 * 304.99749 * 17 15 14 37 37 H 0.96699 * 114.00183 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.98380 * 0.24954 * 20 19 15 39 39 H 1.08005 * 120.01789 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.01228 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.99239 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2130 8 6 5.4184 -1.3603 2.8157 9 7 6.2690 -0.7748 2.0011 10 14 6.0411 -2.2409 4.3409 11 1 4.8912 -2.8123 5.0867 12 1 6.9636 -3.3333 3.9398 13 1 6.7636 -1.2766 5.2090 14 7 2.0197 -0.6925 -1.1993 15 6 2.0824 0.2226 -2.3468 16 1 1.2576 0.9330 -2.2907 17 6 3.4111 0.9808 -2.3223 18 8 4.4880 0.0611 -2.5128 19 6 1.9786 -0.5677 -3.6258 20 6 2.6378 -1.7769 -3.7460 21 6 2.5480 -2.4997 -4.9204 22 6 1.7970 -2.0126 -5.9768 23 9 1.7090 -2.7181 -7.1255 24 6 1.1373 -0.8014 -5.8553 25 6 1.2294 -0.0798 -4.6803 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4371 1.3574 33 1 7.2196 -0.8006 2.1921 34 1 2.9173 -1.1205 -1.0286 35 1 3.4210 1.7224 -3.1211 36 1 3.5263 1.4811 -1.3608 37 1 5.3627 0.4734 -2.5090 38 1 3.2235 -2.1566 -2.9219 39 1 3.0627 -3.4446 -5.0139 40 1 0.5516 -0.4203 -6.6787 41 1 0.7153 0.8652 -4.5854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:32 Heat of formation + Delta-G solvation = -87.345275 kcal Electronic energy + Delta-G solvation = -22169.233022 eV Core-core repulsion = 18769.743843 eV Total energy + Delta-G solvation = -3399.489179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.82823 -39.53144 -37.51410 -35.93652 -33.48319 -32.32816 -31.04967 -29.78190 -28.90649 -27.02150 -25.07276 -23.20131 -22.93143 -21.48072 -20.36800 -19.57321 -17.63029 -17.25316 -16.39097 -16.20207 -15.81650 -15.52969 -15.10468 -14.96281 -14.50768 -14.24993 -13.83529 -13.43399 -13.28731 -13.05203 -12.75614 -12.52645 -12.32380 -12.03814 -11.85010 -11.73555 -11.32927 -11.16755 -11.07038 -10.92762 -10.82068 -10.48304 -10.29812 -9.87870 -9.71258 -9.27772 -9.03336 -8.98153 -8.44671 -8.36458 -7.99386 -6.01837 -4.03301 1.24569 1.37331 3.29857 3.37780 3.42001 3.68472 4.29432 4.34339 4.45082 4.65817 4.83209 4.87922 4.96024 5.20790 5.34453 5.40714 5.44574 5.49876 5.52889 5.63964 5.67802 5.77634 5.91608 6.00184 6.14750 6.15847 6.21392 6.33246 6.42139 6.49225 6.51380 6.73277 6.89041 7.00308 7.07468 7.47388 7.62345 7.79190 7.83814 7.92271 7.99471 8.41836 9.03445 9.60886 11.09186 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.003982 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.119263 B = 7030.082032 C = 7543.424582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.677 5.677 15 C 0.128 3.872 16 H 0.093 0.907 17 C 0.050 3.950 18 O -0.560 6.560 19 C -0.064 4.064 20 C -0.042 4.042 21 C -0.159 4.159 22 C 0.086 3.914 23 F -0.147 7.147 24 C -0.161 4.161 25 C -0.094 4.094 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.009 0.991 33 H 0.259 0.741 34 H 0.363 0.637 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.381 0.619 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 3.704 -13.664 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.312 5.312 15 C 0.017 3.983 16 H 0.111 0.889 17 C -0.030 4.030 18 O -0.365 6.365 19 C -0.065 4.065 20 C -0.060 4.060 21 C -0.177 4.177 22 C 0.066 3.934 23 F -0.126 7.126 24 C -0.180 4.180 25 C -0.113 4.113 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.187 0.813 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.627 3.020 -13.898 17.174 hybrid contribution 1.703 0.450 0.850 1.956 sum -7.923 3.470 -13.048 15.655 Atomic orbital electron populations 1.21813 0.95738 1.01852 1.00087 1.21628 0.94427 0.96109 0.90627 0.94493 1.21835 0.99804 0.99493 0.94174 1.19121 0.88650 0.96678 0.97095 1.21278 0.91952 1.34144 1.08308 0.92707 1.24997 0.97088 0.95603 0.96633 1.69962 1.02231 1.44206 1.36951 0.86577 0.78872 0.79511 0.83286 1.19759 1.21016 1.21124 1.60674 1.35623 1.31227 1.03679 1.20576 0.94974 0.93102 0.89666 0.88937 1.22819 0.88615 0.91872 0.99668 1.86434 1.17209 1.36948 1.95959 1.19747 0.96637 0.95456 0.94685 1.20894 0.95936 0.92997 0.96212 1.21186 1.01364 1.01850 0.93348 1.17722 1.00869 0.91958 0.82807 1.91462 1.95046 1.78223 1.47893 1.20954 1.02718 0.94755 0.99549 1.20815 0.98607 0.99602 0.92243 0.92287 0.93017 0.93848 0.92778 0.92437 0.96195 0.97219 0.93186 0.81252 0.94009 0.92860 0.77138 0.84403 0.85106 0.85333 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.40 37.16 0.35 -1.56 16 2 C 0.08 1.33 2.44 -67.72 -0.17 1.17 16 3 H 0.04 0.61 7.10 -51.93 -0.37 0.24 16 4 C -0.12 -2.30 4.74 -26.73 -0.13 -2.43 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 6 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.68 -10.81 5.52 -100.95 -0.56 -11.37 16 15 C 0.13 1.72 2.46 -68.86 -0.17 1.55 16 16 H 0.09 1.12 6.97 -51.93 -0.36 0.75 16 17 C 0.05 0.67 6.68 37.16 0.25 0.92 16 18 O -0.56 -8.20 11.44 -35.23 -0.40 -8.60 16 19 C -0.06 -0.86 4.83 -104.62 -0.51 -1.36 16 20 C -0.04 -0.60 8.31 -39.60 -0.33 -0.93 16 21 C -0.16 -2.10 10.03 -39.52 -0.40 -2.50 16 22 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 23 F -0.15 -1.96 17.27 2.25 0.04 -1.93 16 24 C -0.16 -1.86 10.03 -39.52 -0.40 -2.26 16 25 C -0.09 -1.08 9.67 -39.60 -0.38 -1.47 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.54 7.43 -51.93 -0.39 0.15 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.02 0.52 6.43 -51.93 -0.33 0.18 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.36 6.70 5.03 -39.29 -0.20 6.50 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 37 H 0.38 4.45 9.12 45.56 0.42 4.86 16 38 H 0.14 2.12 6.99 -52.48 -0.37 1.75 16 39 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.14 8.03 -52.49 -0.42 0.71 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -29.96 339.12 -8.13 -38.09 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.33 Total: 8.43 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.71 Total: -20.82 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.18 Total: -36.72 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.40 Total: -8.60 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.96 -8.13 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.255 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds