Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47156 * 2 1 4 4 C 1.53003 * 109.47092 * 119.99845 * 2 1 3 5 5 C 1.53000 * 109.46970 * 185.00305 * 4 2 1 6 6 C 1.50698 * 109.47234 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00485 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99968 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00394 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47310 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47438 * 119.99449 * 10 8 6 13 13 H 1.48505 * 109.47446 * 239.99879 * 10 8 6 14 14 N 1.46893 * 109.47308 * 239.99882 * 2 1 3 15 15 C 1.46900 * 111.00054 * 84.99715 * 14 2 1 16 16 H 1.09001 * 109.47592 * 325.00587 * 15 14 2 17 17 C 1.53003 * 109.46815 * 85.00395 * 15 14 2 18 18 O 1.42897 * 109.47381 * 64.99872 * 17 15 14 19 19 C 1.50699 * 109.47452 * 204.99991 * 15 14 2 20 20 C 1.38247 * 119.97465 * 319.72965 * 19 15 14 21 21 C 1.38190 * 120.02973 * 180.27547 * 20 19 15 22 22 C 1.38466 * 119.97055 * 359.97438 * 21 20 19 23 23 F 1.35097 * 120.02197 * 179.97438 * 22 21 20 24 24 C 1.38454 * 119.94878 * 0.02562 * 22 21 20 25 25 C 1.38192 * 119.97677 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46978 * 299.99922 * 1 2 3 28 28 H 1.08995 * 109.47173 * 60.00154 * 1 2 3 29 29 H 1.09004 * 109.47283 * 304.99736 * 4 2 1 30 30 H 1.08994 * 109.47120 * 64.99957 * 4 2 1 31 31 H 1.09001 * 109.47006 * 299.99427 * 5 4 2 32 32 H 1.09001 * 109.47267 * 60.00171 * 5 4 2 33 33 H 0.96996 * 120.00554 * 180.02562 * 9 8 6 34 34 H 1.00905 * 111.00098 * 208.95421 * 14 2 1 35 35 H 1.09000 * 109.46890 * 185.00193 * 17 15 14 36 36 H 1.09001 * 109.47342 * 304.99749 * 17 15 14 37 37 H 0.96699 * 114.00183 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.98380 * 0.24954 * 20 19 15 39 39 H 1.08005 * 120.01789 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.01228 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.99239 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8045 3.2130 8 6 5.4184 -1.3603 2.8157 9 7 6.2690 -0.7748 2.0011 10 14 6.0411 -2.2409 4.3409 11 1 4.8912 -2.8123 5.0867 12 1 6.9636 -3.3333 3.9398 13 1 6.7636 -1.2766 5.2090 14 7 2.0197 -0.6925 -1.1993 15 6 2.0824 0.2226 -2.3468 16 1 1.2576 0.9330 -2.2907 17 6 3.4111 0.9808 -2.3223 18 8 4.4880 0.0611 -2.5128 19 6 1.9786 -0.5677 -3.6258 20 6 2.6378 -1.7769 -3.7460 21 6 2.5480 -2.4997 -4.9204 22 6 1.7970 -2.0126 -5.9768 23 9 1.7090 -2.7181 -7.1255 24 6 1.1373 -0.8014 -5.8553 25 6 1.2294 -0.0798 -4.6803 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4371 1.3574 33 1 7.2196 -0.8006 2.1921 34 1 2.9173 -1.1205 -1.0286 35 1 3.4210 1.7224 -3.1211 36 1 3.5263 1.4811 -1.3608 37 1 5.3627 0.4734 -2.5090 38 1 3.2235 -2.1566 -2.9219 39 1 3.0627 -3.4446 -5.0139 40 1 0.5516 -0.4203 -6.6787 41 1 0.7153 0.8652 -4.5854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = -106.323316 kcal Electronic energy + Delta-G solvation = -22170.055972 eV Core-core repulsion = 18769.743843 eV Total energy + Delta-G solvation = -3400.312129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83898 -40.58041 -38.68444 -37.20620 -35.27912 -33.83138 -32.01743 -31.40520 -30.10258 -28.14408 -26.94545 -24.29471 -23.92823 -23.18206 -21.50773 -20.95344 -18.71053 -18.45498 -18.31723 -17.29341 -16.90396 -16.55266 -16.51821 -16.36507 -16.11692 -15.33717 -14.96306 -14.58417 -14.37678 -14.33058 -14.29147 -14.14658 -13.44892 -13.36579 -13.11346 -13.10116 -12.85862 -12.77592 -12.46665 -12.30525 -12.16879 -11.86242 -11.75760 -11.60223 -11.25957 -10.94513 -10.85207 -10.51960 -9.94622 -9.47804 -9.21439 -8.17946 -6.27394 0.24975 0.40973 1.38827 1.40261 1.52393 2.41661 2.68115 3.14672 3.20255 3.36535 3.59025 3.81492 3.87633 4.04454 4.09224 4.22574 4.35381 4.45065 4.47258 4.50404 4.52736 4.66570 4.70865 4.82608 5.02757 5.05996 5.11221 5.13169 5.15195 5.24389 5.26759 5.39514 5.49738 5.57696 5.67634 5.78664 5.88302 6.02249 6.28694 6.31993 6.48305 6.85705 6.88982 7.41115 8.92941 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.003982 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.119263 B = 7030.082032 C = 7543.424582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.087 3.913 3 H 0.036 0.964 4 C -0.104 4.104 5 C 0.033 3.967 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.925 5.925 10 Si 0.957 3.043 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.278 1.278 14 N -0.681 5.681 15 C 0.127 3.873 16 H 0.116 0.884 17 C 0.051 3.949 18 O -0.580 6.580 19 C -0.072 4.072 20 C -0.059 4.059 21 C -0.168 4.168 22 C 0.073 3.927 23 F -0.151 7.151 24 C -0.154 4.154 25 C -0.086 4.086 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.001 0.999 32 H -0.015 1.015 33 H 0.261 0.739 34 H 0.346 0.654 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.390 0.610 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 4.504 -14.160 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 H 0.054 0.946 4 C -0.142 4.142 5 C -0.004 4.004 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.566 5.566 10 Si 0.782 3.218 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.314 5.314 15 C 0.017 3.983 16 H 0.133 0.867 17 C -0.028 4.028 18 O -0.387 6.387 19 C -0.073 4.073 20 C -0.077 4.077 21 C -0.187 4.187 22 C 0.054 3.946 23 F -0.130 7.130 24 C -0.173 4.173 25 C -0.105 4.105 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.239 0.761 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.191 3.829 -14.399 18.634 hybrid contribution 2.210 0.209 0.965 2.421 sum -8.981 4.039 -13.434 16.656 Atomic orbital electron populations 1.21735 0.93153 1.02022 1.01729 1.21553 0.96275 0.95268 0.89128 0.94636 1.21662 0.96403 0.99658 0.96491 1.18941 0.91872 0.94353 0.95255 1.21723 0.92490 1.34539 1.09389 0.92767 1.25856 0.97369 0.96321 0.99761 1.70078 1.02569 1.45244 1.38673 0.85518 0.78376 0.78374 0.79494 1.18922 1.20540 1.20413 1.60735 1.34438 1.31981 1.04229 1.20712 0.95729 0.93078 0.88778 0.86666 1.22852 0.88291 0.92051 0.99646 1.86423 1.18187 1.38116 1.95962 1.19797 0.97153 0.95131 0.95192 1.20772 0.96835 0.94105 0.96021 1.21252 1.01829 1.02189 0.93419 1.17906 1.01401 0.92746 0.82576 1.91452 1.95108 1.78464 1.47974 1.21284 1.01873 0.93756 1.00337 1.21127 0.97596 1.00542 0.91195 0.92830 0.91923 0.91666 0.92535 0.93174 0.98122 0.99702 0.92970 0.83272 0.91297 0.94697 0.76103 0.86656 0.84722 0.82609 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.40 71.98 0.68 -2.61 16 2 C 0.09 2.80 2.44 44.92 0.11 2.91 16 3 H 0.04 1.15 7.10 -2.38 -0.02 1.14 16 4 C -0.10 -4.21 4.74 30.60 0.15 -4.07 16 5 C 0.03 1.68 4.80 29.85 0.14 1.83 16 6 C -0.54 -30.79 9.11 25.60 0.23 -30.55 16 7 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.01 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 10 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 14 N -0.68 -21.73 5.52 -473.31 -2.61 -24.34 16 15 C 0.13 3.26 2.46 44.17 0.11 3.37 16 16 H 0.12 2.41 6.97 -2.39 -0.02 2.40 16 17 C 0.05 1.34 6.68 71.98 0.48 1.82 16 18 O -0.58 -17.50 11.44 -148.98 -1.70 -19.21 16 19 C -0.07 -1.81 4.83 -19.86 -0.10 -1.90 16 20 C -0.06 -1.69 8.31 22.26 0.18 -1.50 16 21 C -0.17 -4.46 10.03 22.31 0.22 -4.24 16 22 C 0.07 1.80 7.30 22.38 0.16 1.97 16 23 F -0.15 -3.85 17.27 44.97 0.78 -3.08 16 24 C -0.15 -3.12 10.03 22.31 0.22 -2.89 16 25 C -0.09 -1.71 9.67 22.26 0.22 -1.49 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.06 1.39 7.43 -2.39 -0.02 1.38 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.00 0.03 6.43 -2.39 -0.02 0.02 16 32 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.35 13.30 5.03 -89.69 -0.45 12.85 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 1.03 7.38 -2.39 -0.02 1.02 16 37 H 0.39 9.54 9.12 -74.06 -0.68 8.86 16 38 H 0.12 3.78 6.99 -2.91 -0.02 3.76 16 39 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.16 2.08 8.03 -2.91 -0.02 2.05 16 Total: -1.00 -65.08 339.12 1.96 -63.12 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.09 Total: 28.65 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.27 Total: -36.61 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -2.33 Total: -79.17 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.70 Total: -19.21 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.08 1.96 -63.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.203 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds