Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47208 * 2 1 4 4 C 1.52999 * 109.47087 * 240.00060 * 2 1 3 5 5 C 1.53003 * 109.47045 * 175.00446 * 4 2 1 6 6 C 1.50700 * 109.47130 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99803 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00034 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00009 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46687 * 90.00165 * 10 8 6 12 12 H 1.48494 * 109.47010 * 210.00386 * 10 8 6 13 13 H 1.48503 * 109.47018 * 330.00486 * 10 8 6 14 14 N 1.46901 * 109.47254 * 119.99971 * 2 1 3 15 15 C 1.46904 * 110.99982 * 272.57110 * 14 2 1 16 16 H 1.09001 * 109.46728 * 344.70791 * 15 14 2 17 17 C 1.52998 * 109.47165 * 104.71290 * 15 14 2 18 18 O 1.42897 * 109.47523 * 64.05801 * 17 15 14 19 19 C 1.50696 * 109.46577 * 224.71128 * 15 14 2 20 20 C 1.38247 * 119.97790 * 319.71914 * 19 15 14 21 21 C 1.38200 * 120.02601 * 179.76873 * 20 19 15 22 22 C 1.38459 * 119.97426 * 0.51674 * 21 20 19 23 23 F 1.35099 * 120.02462 * 179.76875 * 22 21 20 24 24 C 1.38460 * 119.94565 * 359.73471 * 22 21 20 25 25 C 1.38197 * 119.97956 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47012 * 180.51887 * 1 2 3 27 27 H 1.09005 * 109.47049 * 300.51804 * 1 2 3 28 28 H 1.08998 * 109.46934 * 60.52091 * 1 2 3 29 29 H 1.09004 * 109.47267 * 294.99744 * 4 2 1 30 30 H 1.08998 * 109.47305 * 54.99848 * 4 2 1 31 31 H 1.09004 * 109.46943 * 299.99435 * 5 4 2 32 32 H 1.08991 * 109.47361 * 59.99826 * 5 4 2 33 33 H 0.96998 * 120.00352 * 179.97438 * 9 8 6 34 34 H 1.00905 * 110.99460 * 36.51945 * 14 2 1 35 35 H 1.09003 * 109.46979 * 184.06216 * 17 15 14 36 36 H 1.09000 * 109.47186 * 304.05755 * 17 15 14 37 37 H 0.96700 * 114.00145 * 179.97438 * 18 17 15 38 38 H 1.08004 * 119.98520 * 0.02562 * 20 19 15 39 39 H 1.08002 * 120.01172 * 180.25170 * 21 20 19 40 40 H 1.08006 * 120.01060 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98620 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0671 -1.3232 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4183 -1.3593 -2.8162 9 7 6.2690 -0.7748 -2.0012 10 14 6.0410 -2.2399 -4.3415 11 1 6.0904 -1.2857 -5.4783 12 1 7.4025 -2.7737 -4.0838 13 1 5.1250 -3.3601 -4.6750 14 7 2.0197 -0.6925 1.1994 15 6 2.1372 0.2356 2.3321 16 1 2.0980 1.2618 1.9665 17 6 0.9835 -0.0025 3.3084 18 8 1.0894 -1.3166 3.8595 19 6 3.4484 0.0035 3.0377 20 6 3.9124 -1.2850 3.2267 21 6 5.1171 -1.4989 3.8694 22 6 5.8541 -0.4226 4.3335 23 9 7.0296 -0.6307 4.9661 24 6 5.3858 0.8672 4.1482 25 6 4.1833 1.0789 3.5008 26 1 -0.3633 -1.0276 0.0093 27 1 -0.3633 0.5219 0.8853 28 1 -0.3633 0.5057 -0.8946 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2618 -2.1370 31 1 3.8533 0.4369 -1.3573 32 1 3.9994 -1.0729 -0.4260 33 1 7.2196 -0.8005 -2.1922 34 1 1.4264 -1.4746 1.4329 35 1 1.0294 0.7331 4.1114 36 1 0.0348 0.0947 2.7804 37 1 0.3890 -1.5368 4.4889 38 1 3.3353 -2.1246 2.8683 39 1 5.4813 -2.5054 4.0134 40 1 5.9597 1.7075 4.5102 41 1 3.8182 2.0849 3.3559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = -82.569786 kcal Electronic energy + Delta-G solvation = -22283.601168 eV Core-core repulsion = 18884.319070 eV Total energy + Delta-G solvation = -3399.282098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.59495 -39.41995 -37.48298 -36.17725 -33.42831 -32.25831 -30.81419 -29.83721 -28.56982 -27.21623 -24.93194 -23.13167 -22.71416 -21.35509 -20.46054 -19.78141 -17.65322 -17.32245 -16.09579 -16.05906 -15.75127 -15.33406 -15.16008 -14.70596 -14.43273 -14.32348 -13.77276 -13.22143 -13.16579 -13.04508 -12.93124 -12.35841 -12.32743 -12.12497 -11.95623 -11.61304 -11.27301 -11.16879 -11.13058 -10.79985 -10.64246 -10.42384 -10.30654 -9.96539 -9.59738 -9.17297 -8.85677 -8.73165 -8.19966 -8.18975 -7.91368 -5.83308 -3.84719 1.47625 1.62306 3.39831 3.46145 3.49299 3.84662 4.14495 4.52814 4.57829 4.58093 4.81699 5.01997 5.07713 5.17887 5.22411 5.37754 5.41798 5.48596 5.51774 5.60447 5.65366 5.68990 5.82757 6.04179 6.21570 6.24576 6.34864 6.39983 6.43098 6.63139 6.66013 6.90365 6.91624 7.23026 7.34058 7.44089 7.56829 7.83484 7.89237 8.12678 8.29250 8.62252 9.24430 9.77675 11.27371 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.005737 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.707887 B = 4879.182689 C = 6679.402415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.660 5.660 15 C 0.130 3.870 16 H 0.090 0.910 17 C 0.055 3.945 18 O -0.560 6.560 19 C -0.068 4.068 20 C -0.031 4.031 21 C -0.160 4.160 22 C 0.089 3.911 23 F -0.148 7.148 24 C -0.161 4.161 25 C -0.093 4.093 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.346 0.654 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.375 0.625 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 3.247 14.790 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.532 5.532 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.291 5.291 15 C 0.019 3.981 16 H 0.107 0.893 17 C -0.024 4.024 18 O -0.364 6.364 19 C -0.069 4.069 20 C -0.050 4.050 21 C -0.178 4.178 22 C 0.070 3.930 23 F -0.127 7.127 24 C -0.179 4.179 25 C -0.111 4.111 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.221 0.779 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.766 3.299 14.255 17.592 hybrid contribution -0.690 -0.256 -0.252 0.778 sum -10.456 3.043 14.004 17.739 Atomic orbital electron populations 1.22623 0.98625 1.01568 1.01164 1.21910 0.90860 0.98097 0.91778 0.91061 1.21625 1.00693 0.98387 0.92871 1.18979 0.88199 0.96389 0.97066 1.21334 0.91817 1.34125 1.08436 0.93203 1.24992 0.97163 0.95805 0.96409 1.69981 1.02118 1.44361 1.36726 0.86714 0.78162 0.80011 0.83785 1.20899 1.21357 1.20041 1.60386 1.56650 1.09716 1.02347 1.20622 0.90490 0.97230 0.89741 0.89255 1.22884 0.97976 0.84949 0.96592 1.86546 1.54347 1.32055 1.63493 1.19686 0.96238 0.93199 0.97819 1.20759 0.93469 0.97446 0.93300 1.21154 0.96468 0.98261 1.01951 1.17708 0.82902 0.94487 0.97876 1.91454 1.45374 1.95882 1.79970 1.20921 0.98123 0.95275 1.03617 1.20781 0.93997 0.98689 0.97657 0.92696 0.93839 0.92254 0.93453 0.93613 0.97663 0.94809 0.93291 0.83419 0.93502 0.93344 0.77873 0.84626 0.85312 0.85427 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.13 37.16 0.34 -1.90 16 2 C 0.08 1.32 2.55 -67.71 -0.17 1.15 16 3 H 0.07 1.18 7.30 -51.93 -0.38 0.80 16 4 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 10 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.66 -10.13 4.82 -100.95 -0.49 -10.62 16 15 C 0.13 1.69 2.73 -68.87 -0.19 1.50 16 16 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 17 C 0.06 0.54 6.61 37.16 0.25 0.78 16 18 O -0.56 -5.53 11.53 -35.23 -0.41 -5.94 16 19 C -0.07 -1.02 4.84 -104.62 -0.51 -1.52 16 20 C -0.03 -0.50 8.33 -39.59 -0.33 -0.83 16 21 C -0.16 -2.53 10.03 -39.51 -0.40 -2.92 16 22 C 0.09 1.43 7.30 -39.42 -0.29 1.14 16 23 F -0.15 -2.39 17.27 2.25 0.04 -2.35 16 24 C -0.16 -2.33 10.03 -39.51 -0.40 -2.73 16 25 C -0.09 -1.30 9.67 -39.59 -0.38 -1.68 16 26 H 0.05 0.67 8.12 -51.93 -0.42 0.24 16 27 H 0.04 0.45 6.59 -51.93 -0.34 0.11 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.35 4.98 7.43 -39.29 -0.29 4.69 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.42 6.54 -51.93 -0.34 0.08 16 37 H 0.37 2.05 9.12 45.56 0.42 2.46 16 38 H 0.14 2.16 7.45 -52.48 -0.39 1.77 16 39 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.12 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -33.14 341.46 -8.18 -41.32 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.44 Total: 4.49 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.75 Total: -22.31 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.25 Total: -37.70 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.41 Total: -5.94 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.14 -8.18 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.251 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds