Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47208 * 2 1 4 4 C 1.52999 * 109.47087 * 240.00060 * 2 1 3 5 5 C 1.53003 * 109.47045 * 175.00446 * 4 2 1 6 6 C 1.50700 * 109.47130 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99803 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00034 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00229 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00009 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46687 * 90.00165 * 10 8 6 12 12 H 1.48494 * 109.47010 * 210.00386 * 10 8 6 13 13 H 1.48503 * 109.47018 * 330.00486 * 10 8 6 14 14 N 1.46901 * 109.47254 * 119.99971 * 2 1 3 15 15 C 1.46904 * 110.99982 * 272.57110 * 14 2 1 16 16 H 1.09001 * 109.46728 * 344.70791 * 15 14 2 17 17 C 1.52998 * 109.47165 * 104.71290 * 15 14 2 18 18 O 1.42897 * 109.47523 * 64.05801 * 17 15 14 19 19 C 1.50696 * 109.46577 * 224.71128 * 15 14 2 20 20 C 1.38247 * 119.97790 * 319.71914 * 19 15 14 21 21 C 1.38200 * 120.02601 * 179.76873 * 20 19 15 22 22 C 1.38459 * 119.97426 * 0.51674 * 21 20 19 23 23 F 1.35099 * 120.02462 * 179.76875 * 22 21 20 24 24 C 1.38460 * 119.94565 * 359.73471 * 22 21 20 25 25 C 1.38197 * 119.97956 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47012 * 180.51887 * 1 2 3 27 27 H 1.09005 * 109.47049 * 300.51804 * 1 2 3 28 28 H 1.08998 * 109.46934 * 60.52091 * 1 2 3 29 29 H 1.09004 * 109.47267 * 294.99744 * 4 2 1 30 30 H 1.08998 * 109.47305 * 54.99848 * 4 2 1 31 31 H 1.09004 * 109.46943 * 299.99435 * 5 4 2 32 32 H 1.08991 * 109.47361 * 59.99826 * 5 4 2 33 33 H 0.96998 * 120.00352 * 179.97438 * 9 8 6 34 34 H 1.00905 * 110.99460 * 36.51945 * 14 2 1 35 35 H 1.09003 * 109.46979 * 184.06216 * 17 15 14 36 36 H 1.09000 * 109.47186 * 304.05755 * 17 15 14 37 37 H 0.96700 * 114.00145 * 179.97438 * 18 17 15 38 38 H 1.08004 * 119.98520 * 0.02562 * 20 19 15 39 39 H 1.08002 * 120.01172 * 180.25170 * 21 20 19 40 40 H 1.08006 * 120.01060 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98620 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0671 -1.3232 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4183 -1.3593 -2.8162 9 7 6.2690 -0.7748 -2.0012 10 14 6.0410 -2.2399 -4.3415 11 1 6.0904 -1.2857 -5.4783 12 1 7.4025 -2.7737 -4.0838 13 1 5.1250 -3.3601 -4.6750 14 7 2.0197 -0.6925 1.1994 15 6 2.1372 0.2356 2.3321 16 1 2.0980 1.2618 1.9665 17 6 0.9835 -0.0025 3.3084 18 8 1.0894 -1.3166 3.8595 19 6 3.4484 0.0035 3.0377 20 6 3.9124 -1.2850 3.2267 21 6 5.1171 -1.4989 3.8694 22 6 5.8541 -0.4226 4.3335 23 9 7.0296 -0.6307 4.9661 24 6 5.3858 0.8672 4.1482 25 6 4.1833 1.0789 3.5008 26 1 -0.3633 -1.0276 0.0093 27 1 -0.3633 0.5219 0.8853 28 1 -0.3633 0.5057 -0.8946 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2618 -2.1370 31 1 3.8533 0.4369 -1.3573 32 1 3.9994 -1.0729 -0.4260 33 1 7.2196 -0.8005 -2.1922 34 1 1.4264 -1.4746 1.4329 35 1 1.0294 0.7331 4.1114 36 1 0.0348 0.0947 2.7804 37 1 0.3890 -1.5368 4.4889 38 1 3.3353 -2.1246 2.8683 39 1 5.4813 -2.5054 4.0134 40 1 5.9597 1.7075 4.5102 41 1 3.8182 2.0849 3.3559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -104.783415 kcal Electronic energy + Delta-G solvation = -22284.564424 eV Core-core repulsion = 18884.319070 eV Total energy + Delta-G solvation = -3400.245354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.84185 -40.50496 -38.60979 -37.18791 -35.27163 -33.78489 -31.98345 -31.52756 -29.83346 -28.15711 -26.86290 -24.18900 -23.88049 -23.13880 -21.57800 -21.24969 -18.64163 -18.38897 -18.27077 -17.22913 -16.87438 -16.54657 -16.50862 -16.17234 -15.89271 -15.37440 -14.87484 -14.57217 -14.42935 -14.35191 -14.23168 -13.92171 -13.69811 -13.26116 -13.16821 -13.07438 -12.84921 -12.81646 -12.43054 -12.26998 -12.17431 -11.78532 -11.73339 -11.47715 -11.16492 -10.97088 -10.73139 -10.46278 -9.90791 -9.37607 -9.07287 -8.11425 -6.21687 0.29026 0.45013 1.39063 1.40848 1.51521 2.44281 2.71965 3.20577 3.22680 3.39735 3.61325 3.86241 3.91664 4.04468 4.08850 4.22607 4.36012 4.47823 4.49633 4.53235 4.62079 4.67378 4.78120 4.84028 5.03042 5.08924 5.10627 5.16062 5.20178 5.26347 5.35731 5.43692 5.51992 5.61855 5.71293 5.94413 6.06464 6.08150 6.37131 6.39108 6.72338 6.99169 7.01443 7.46255 8.99124 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.005737 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.707887 B = 4879.182689 C = 6679.402415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 H 0.064 0.936 4 C -0.089 4.089 5 C 0.042 3.958 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.264 1.264 14 N -0.682 5.682 15 C 0.127 3.873 16 H 0.097 0.903 17 C 0.066 3.934 18 O -0.579 6.579 19 C -0.076 4.076 20 C -0.047 4.047 21 C -0.175 4.175 22 C 0.066 3.934 23 F -0.154 7.154 24 C -0.162 4.162 25 C -0.097 4.097 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.048 0.952 31 H -0.025 1.025 32 H 0.003 0.997 33 H 0.259 0.741 34 H 0.350 0.650 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.150 0.850 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 3.738 14.596 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.188 1.188 14 N -0.314 5.314 15 C 0.017 3.983 16 H 0.114 0.886 17 C -0.013 4.013 18 O -0.387 6.387 19 C -0.077 4.077 20 C -0.066 4.066 21 C -0.194 4.194 22 C 0.047 3.953 23 F -0.132 7.132 24 C -0.181 4.181 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.067 0.933 31 H -0.007 1.007 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.244 0.756 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.607 3.785 14.073 18.631 hybrid contribution -0.104 -0.412 -0.173 0.459 sum -11.711 3.372 13.900 18.487 Atomic orbital electron populations 1.22462 0.95153 1.02393 1.02692 1.21658 0.93455 0.96711 0.89960 0.91796 1.21463 0.96375 0.99027 0.95810 1.18787 0.92323 0.93624 0.94821 1.21826 0.92392 1.34283 1.09422 0.92771 1.25928 0.97486 0.96572 0.99843 1.70132 1.02410 1.45774 1.38838 0.85569 0.77518 0.79060 0.79624 1.19764 1.21083 1.18830 1.60186 1.57390 1.10685 1.03113 1.20702 0.90920 0.96955 0.89709 0.88558 1.22728 0.96844 0.85339 0.96423 1.86507 1.55733 1.32187 1.64280 1.20052 0.97215 0.92985 0.97444 1.20801 0.93670 0.98025 0.94071 1.21329 0.96847 0.98814 1.02374 1.17950 0.83119 0.95320 0.98895 1.91431 1.45659 1.95984 1.80173 1.21257 0.98478 0.95310 1.03032 1.21162 0.93579 0.99910 0.96895 0.92237 0.91147 0.91865 0.93731 0.93337 1.00693 0.97875 0.93255 0.82927 0.91852 0.91541 0.75607 0.85324 0.84830 0.83251 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.13 71.98 0.66 -3.00 16 2 C 0.09 2.81 2.55 44.92 0.11 2.93 16 3 H 0.06 2.05 7.30 -2.39 -0.02 2.03 16 4 C -0.09 -3.62 4.83 30.59 0.15 -3.47 16 5 C 0.04 2.26 4.86 29.85 0.15 2.41 16 6 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 7 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 10 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 14 N -0.68 -20.44 4.82 -473.31 -2.28 -22.72 16 15 C 0.13 3.12 2.73 44.17 0.12 3.24 16 16 H 0.10 2.21 7.00 -2.39 -0.02 2.19 16 17 C 0.07 1.09 6.61 71.98 0.48 1.57 16 18 O -0.58 -10.33 11.53 -148.98 -1.72 -12.05 16 19 C -0.08 -2.22 4.84 -19.86 -0.10 -2.32 16 20 C -0.05 -1.54 8.33 22.26 0.19 -1.35 16 21 C -0.17 -5.75 10.03 22.31 0.22 -5.53 16 22 C 0.07 2.15 7.30 22.38 0.16 2.32 16 23 F -0.15 -5.07 17.27 44.97 0.78 -4.29 16 24 C -0.16 -4.62 10.03 22.31 0.22 -4.39 16 25 C -0.10 -2.61 9.67 22.26 0.22 -2.40 16 26 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.07 1.18 6.59 -2.38 -0.02 1.17 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H -0.03 -1.51 8.14 -2.38 -0.02 -1.53 16 32 H 0.00 0.17 7.75 -2.39 -0.02 0.15 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.35 9.71 7.43 -89.69 -0.67 9.04 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.88 6.54 -2.39 -0.02 0.87 16 37 H 0.39 3.38 9.12 -74.06 -0.68 2.71 16 38 H 0.13 4.26 7.45 -2.91 -0.02 4.24 16 39 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.15 3.11 8.04 -2.91 -0.02 3.09 16 Total: -1.00 -73.13 341.46 2.05 -71.08 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.31 Total: 20.27 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 3.27 Total: -41.39 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.00 Total: -81.78 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.72 Total: -12.05 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.13 2.05 -71.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.708 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds