Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 C 1.52996 * 109.47441 * 120.00672 * 2 1 3 5 5 C 1.53006 * 109.47352 * 184.99543 * 4 2 1 6 6 C 1.50698 * 109.47113 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99851 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47268 * 89.99600 * 10 8 6 12 12 H 1.48504 * 109.47170 * 210.00041 * 10 8 6 13 13 H 1.48501 * 109.46962 * 329.99422 * 10 8 6 14 14 N 1.46906 * 109.46672 * 240.00468 * 2 1 3 15 15 C 1.46896 * 111.00068 * 83.81935 * 14 2 1 16 16 H 1.09000 * 109.47115 * 326.71298 * 15 14 2 17 17 C 1.53005 * 109.47013 * 206.71705 * 15 14 2 18 18 O 1.42897 * 109.46954 * 295.85006 * 17 15 14 19 19 C 1.50696 * 109.47525 * 86.71714 * 15 14 2 20 20 C 1.38246 * 119.97507 * 39.72055 * 19 15 14 21 21 C 1.38200 * 120.02429 * 179.72708 * 20 19 15 22 22 C 1.38460 * 119.97390 * 0.52893 * 21 20 19 23 23 F 1.35096 * 120.02439 * 179.72439 * 22 21 20 24 24 C 1.38458 * 119.94759 * 359.75369 * 22 21 20 25 25 C 1.38199 * 119.97630 * 359.97438 * 24 22 21 26 26 H 1.09008 * 109.46493 * 295.17620 * 1 2 3 27 27 H 1.08997 * 109.47466 * 55.16915 * 1 2 3 28 28 H 1.08996 * 109.47196 * 175.18078 * 1 2 3 29 29 H 1.09000 * 109.47063 * 304.99527 * 4 2 1 30 30 H 1.09002 * 109.47614 * 64.99428 * 4 2 1 31 31 H 1.09000 * 109.47024 * 300.00008 * 5 4 2 32 32 H 1.09003 * 109.46509 * 59.99836 * 5 4 2 33 33 H 0.97007 * 120.00110 * 180.02562 * 9 8 6 34 34 H 1.00900 * 111.00236 * 319.85972 * 14 2 1 35 35 H 1.08994 * 109.46919 * 55.85201 * 17 15 14 36 36 H 1.08996 * 109.47227 * 175.85193 * 17 15 14 37 37 H 0.96699 * 114.00409 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.98687 * 359.97438 * 20 19 15 39 39 H 1.07998 * 120.01021 * 180.25486 * 21 20 19 40 40 H 1.08002 * 120.01273 * 179.97438 * 24 22 21 41 41 H 1.07997 * 119.98617 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 6 4.0672 -1.3235 2.5442 7 1 3.3687 -1.8033 3.2137 8 6 5.4184 -1.3596 2.8159 9 7 6.2690 -0.7749 2.0009 10 14 6.0412 -2.2403 4.3410 11 1 6.3218 -3.6611 4.0124 12 1 7.2872 -1.5867 4.8161 13 1 5.0097 -2.1732 5.4072 14 7 2.0196 -0.6924 -1.1996 15 6 2.0558 0.2156 -2.3537 16 1 1.2376 0.9318 -2.2783 17 6 1.9082 -0.5934 -3.6439 18 8 3.0315 -1.4643 -3.7911 19 6 3.3695 0.9538 -2.3711 20 6 4.5380 0.2920 -2.0429 21 6 5.7440 0.9665 -2.0640 22 6 5.7803 2.3084 -2.4035 23 9 6.9580 2.9702 -2.4190 24 6 4.6085 2.9716 -2.7263 25 6 3.4044 2.2936 -2.7100 26 1 -0.3632 0.4372 0.9301 27 1 -0.3634 0.5869 -0.8435 28 1 -0.3633 -1.0240 -0.0863 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0729 0.4257 32 1 3.8533 0.4368 1.3572 33 1 7.2197 -0.8007 2.1919 34 1 1.4611 -1.5088 -1.3991 35 1 0.9935 -1.1844 -3.5996 36 1 1.8611 0.0857 -4.4952 37 1 3.0050 -2.0089 -4.5898 38 1 4.5089 -0.7535 -1.7737 39 1 6.6573 0.4483 -1.8116 40 1 4.6355 4.0184 -2.9908 41 1 2.4904 2.8106 -2.9622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = -81.640366 kcal Electronic energy + Delta-G solvation = -22659.849968 eV Core-core repulsion = 19260.608173 eV Total energy + Delta-G solvation = -3399.241796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.44685 -39.31166 -37.21014 -36.19236 -33.38950 -32.18005 -30.62826 -29.80414 -28.62531 -27.04691 -24.94719 -23.01015 -22.53684 -21.39799 -20.15972 -19.73173 -17.55518 -17.15618 -16.05754 -15.96917 -15.66399 -15.21421 -15.05032 -14.60736 -14.29474 -14.20440 -13.69318 -13.29721 -12.96484 -12.89265 -12.78742 -12.34134 -12.31207 -12.09701 -11.87566 -11.58369 -11.26388 -11.11879 -10.87492 -10.73204 -10.45685 -10.40993 -10.17620 -9.95729 -9.56703 -9.16304 -8.84648 -8.54101 -8.17403 -8.08804 -7.88688 -5.82438 -3.83261 1.60113 1.78443 3.40406 3.46657 3.49513 4.02236 4.28090 4.46888 4.58633 4.71787 4.89122 5.12931 5.21169 5.32007 5.34019 5.44701 5.49311 5.52631 5.53512 5.61588 5.72745 5.78358 5.95668 6.12045 6.25992 6.38602 6.43624 6.48116 6.56761 6.70156 6.90775 6.94631 7.09691 7.36040 7.41920 7.51777 7.71939 7.83124 7.91278 8.14828 8.30080 8.63739 9.25287 9.78773 11.27906 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.006406 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.715381 B = 4370.028272 C = 5793.945256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.033 3.967 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.890 5.890 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.657 5.657 15 C 0.130 3.870 16 H 0.060 0.940 17 C 0.081 3.919 18 O -0.549 6.549 19 C -0.085 4.085 20 C -0.011 4.011 21 C -0.149 4.149 22 C 0.091 3.909 23 F -0.149 7.149 24 C -0.170 4.170 25 C -0.101 4.101 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.005 0.995 33 H 0.257 0.743 34 H 0.339 0.661 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.371 0.629 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 3.405 -14.239 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.004 4.004 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.529 5.529 10 Si 0.712 3.288 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.202 1.202 14 N -0.288 5.288 15 C 0.019 3.981 16 H 0.077 0.923 17 C 0.002 3.998 18 O -0.353 6.353 19 C -0.086 4.086 20 C -0.030 4.030 21 C -0.168 4.168 22 C 0.072 3.928 23 F -0.127 7.127 24 C -0.189 4.189 25 C -0.119 4.119 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.217 0.783 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.836 3.837 -13.530 16.609 hybrid contribution -0.504 -0.393 0.266 0.693 sum -9.340 3.443 -13.263 16.584 Atomic orbital electron populations 1.22559 0.98751 1.01259 1.01403 1.21798 0.90670 0.98542 0.91643 0.90966 1.21625 1.00862 0.98249 0.92898 1.18979 0.88066 0.96377 0.96971 1.21342 0.91806 1.34093 1.08537 0.93305 1.24967 0.97164 0.95765 0.96357 1.69976 1.02040 1.44125 1.36794 0.86738 0.78263 0.79859 0.83928 1.20864 1.21430 1.20163 1.60397 1.58667 1.07780 1.01946 1.20459 0.94164 0.93471 0.89958 0.92267 1.22290 0.88603 0.92237 0.96624 1.86699 1.44332 1.56869 1.47374 1.19650 0.95303 0.92890 1.00770 1.20959 0.89521 1.01258 0.91222 1.21296 1.00615 0.92735 1.02111 1.17776 0.80922 0.91142 1.02975 1.91448 1.45927 1.80974 1.94378 1.20840 0.91714 1.00272 1.06034 1.20718 0.96831 0.93912 1.00456 0.92200 0.93875 0.92836 0.93684 0.93536 0.94687 0.97657 0.93352 0.84204 0.93808 0.93505 0.78297 0.83500 0.84919 0.85755 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.16 37.16 0.34 -1.97 16 2 C 0.08 1.36 2.40 -67.71 -0.16 1.19 16 3 H 0.07 1.29 7.71 -51.93 -0.40 0.89 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.86 4.86 -27.88 -0.14 0.73 16 6 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 7 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.88 22.27 29.54 -169.99 -5.02 17.25 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -10.00 4.68 -100.96 -0.47 -10.47 16 15 C 0.13 1.69 2.46 -68.87 -0.17 1.52 16 16 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 17 C 0.08 0.84 6.55 37.16 0.24 1.08 16 18 O -0.55 -6.48 12.09 -35.23 -0.43 -6.90 16 19 C -0.09 -1.32 4.58 -104.62 -0.48 -1.80 16 20 C -0.01 -0.21 8.25 -39.59 -0.33 -0.54 16 21 C -0.15 -2.79 10.03 -39.51 -0.40 -3.19 16 22 C 0.09 1.60 7.30 -39.42 -0.29 1.31 16 23 F -0.15 -2.65 17.27 2.25 0.04 -2.62 16 24 C -0.17 -2.56 10.03 -39.51 -0.40 -2.96 16 25 C -0.10 -1.42 9.67 -39.59 -0.38 -1.80 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.04 0.48 7.43 -51.93 -0.39 0.09 16 28 H 0.05 0.64 8.05 -51.93 -0.42 0.23 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.96 7.21 -51.93 -0.37 0.59 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.34 4.68 7.97 -39.29 -0.31 4.36 16 35 H 0.04 0.37 8.04 -51.93 -0.42 -0.04 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.37 2.64 9.12 45.56 0.42 3.05 16 38 H 0.15 3.00 7.03 -52.49 -0.37 2.64 16 39 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 40 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -32.47 343.26 -8.21 -40.68 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.55 Total: 5.61 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.69 Total: -22.32 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.26 Total: -36.86 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.43 Total: -6.90 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.47 -8.21 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.965 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds