Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 C 1.52996 * 109.47441 * 120.00672 * 2 1 3 5 5 C 1.53006 * 109.47352 * 184.99543 * 4 2 1 6 6 C 1.50698 * 109.47113 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99851 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00074 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47268 * 89.99600 * 10 8 6 12 12 H 1.48504 * 109.47170 * 210.00041 * 10 8 6 13 13 H 1.48501 * 109.46962 * 329.99422 * 10 8 6 14 14 N 1.46906 * 109.46672 * 240.00468 * 2 1 3 15 15 C 1.46896 * 111.00068 * 83.81935 * 14 2 1 16 16 H 1.09000 * 109.47115 * 326.71298 * 15 14 2 17 17 C 1.53005 * 109.47013 * 206.71705 * 15 14 2 18 18 O 1.42897 * 109.46954 * 295.85006 * 17 15 14 19 19 C 1.50696 * 109.47525 * 86.71714 * 15 14 2 20 20 C 1.38246 * 119.97507 * 39.72055 * 19 15 14 21 21 C 1.38200 * 120.02429 * 179.72708 * 20 19 15 22 22 C 1.38460 * 119.97390 * 0.52893 * 21 20 19 23 23 F 1.35096 * 120.02439 * 179.72439 * 22 21 20 24 24 C 1.38458 * 119.94759 * 359.75369 * 22 21 20 25 25 C 1.38199 * 119.97630 * 359.97438 * 24 22 21 26 26 H 1.09008 * 109.46493 * 295.17620 * 1 2 3 27 27 H 1.08997 * 109.47466 * 55.16915 * 1 2 3 28 28 H 1.08996 * 109.47196 * 175.18078 * 1 2 3 29 29 H 1.09000 * 109.47063 * 304.99527 * 4 2 1 30 30 H 1.09002 * 109.47614 * 64.99428 * 4 2 1 31 31 H 1.09000 * 109.47024 * 300.00008 * 5 4 2 32 32 H 1.09003 * 109.46509 * 59.99836 * 5 4 2 33 33 H 0.97007 * 120.00110 * 180.02562 * 9 8 6 34 34 H 1.00900 * 111.00236 * 319.85972 * 14 2 1 35 35 H 1.08994 * 109.46919 * 55.85201 * 17 15 14 36 36 H 1.08996 * 109.47227 * 175.85193 * 17 15 14 37 37 H 0.96699 * 114.00409 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.98687 * 359.97438 * 20 19 15 39 39 H 1.07998 * 120.01021 * 180.25486 * 21 20 19 40 40 H 1.08002 * 120.01273 * 179.97438 * 24 22 21 41 41 H 1.07997 * 119.98617 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 6 4.0672 -1.3235 2.5442 7 1 3.3687 -1.8033 3.2137 8 6 5.4184 -1.3596 2.8159 9 7 6.2690 -0.7749 2.0009 10 14 6.0412 -2.2403 4.3410 11 1 6.3218 -3.6611 4.0124 12 1 7.2872 -1.5867 4.8161 13 1 5.0097 -2.1732 5.4072 14 7 2.0196 -0.6924 -1.1996 15 6 2.0558 0.2156 -2.3537 16 1 1.2376 0.9318 -2.2783 17 6 1.9082 -0.5934 -3.6439 18 8 3.0315 -1.4643 -3.7911 19 6 3.3695 0.9538 -2.3711 20 6 4.5380 0.2920 -2.0429 21 6 5.7440 0.9665 -2.0640 22 6 5.7803 2.3084 -2.4035 23 9 6.9580 2.9702 -2.4190 24 6 4.6085 2.9716 -2.7263 25 6 3.4044 2.2936 -2.7100 26 1 -0.3632 0.4372 0.9301 27 1 -0.3634 0.5869 -0.8435 28 1 -0.3633 -1.0240 -0.0863 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0729 0.4257 32 1 3.8533 0.4368 1.3572 33 1 7.2197 -0.8007 2.1919 34 1 1.4611 -1.5088 -1.3991 35 1 0.9935 -1.1844 -3.5996 36 1 1.8611 0.0857 -4.4952 37 1 3.0050 -2.0089 -4.5898 38 1 4.5089 -0.7535 -1.7737 39 1 6.6573 0.4483 -1.8116 40 1 4.6355 4.0184 -2.9908 41 1 2.4904 2.8106 -2.9622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -103.811670 kcal Electronic energy + Delta-G solvation = -22660.811388 eV Core-core repulsion = 19260.608173 eV Total energy + Delta-G solvation = -3400.203216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.83756 -40.49115 -38.42292 -37.25171 -35.27516 -33.73482 -31.92228 -31.51896 -29.94234 -28.02861 -26.88637 -24.15908 -23.82798 -23.17404 -21.33650 -21.26259 -18.62202 -18.34001 -18.28665 -17.20570 -16.83592 -16.57234 -16.51302 -16.17048 -15.82725 -15.21777 -14.95567 -14.56697 -14.45621 -14.22938 -14.08151 -13.92716 -13.76048 -13.30486 -13.14862 -13.06196 -12.85422 -12.80091 -12.51011 -12.30751 -11.98558 -11.70992 -11.62242 -11.46383 -11.15303 -10.91815 -10.74462 -10.44041 -9.86247 -9.37245 -9.03842 -8.09462 -6.19644 0.29790 0.49448 1.38531 1.39930 1.50311 2.44388 2.76656 3.21871 3.27246 3.41924 3.58032 3.89264 3.97430 4.07125 4.14080 4.28109 4.42465 4.50101 4.54396 4.56174 4.64668 4.71965 4.78170 4.83701 5.04576 5.09513 5.13689 5.17077 5.23489 5.28299 5.36538 5.52015 5.55520 5.63564 5.77098 5.96535 6.09177 6.12196 6.37930 6.39845 6.75380 7.00787 7.11366 7.47624 9.00079 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.006406 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.715381 B = 4370.028272 C = 5793.945256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.055 0.945 4 C -0.091 4.091 5 C 0.048 3.952 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.001 3.999 9 N -0.924 5.924 10 Si 0.955 3.045 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.265 1.265 14 N -0.678 5.678 15 C 0.128 3.872 16 H 0.088 0.912 17 C 0.083 3.917 18 O -0.580 6.580 19 C -0.083 4.083 20 C -0.029 4.029 21 C -0.178 4.178 22 C 0.069 3.931 23 F -0.156 7.156 24 C -0.161 4.161 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.011 0.989 32 H -0.033 1.033 33 H 0.257 0.743 34 H 0.348 0.652 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.389 0.611 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.156 0.844 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 3.930 -14.918 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.010 3.990 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.565 5.565 10 Si 0.780 3.220 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.189 1.189 14 N -0.311 5.311 15 C 0.018 3.982 16 H 0.105 0.895 17 C 0.005 3.995 18 O -0.387 6.387 19 C -0.084 4.084 20 C -0.048 4.048 21 C -0.197 4.197 22 C 0.050 3.950 23 F -0.135 7.135 24 C -0.179 4.179 25 C -0.110 4.110 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.029 0.971 32 H -0.015 1.015 33 H 0.066 0.934 34 H 0.168 0.832 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.174 0.826 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.819 4.344 -14.224 18.997 hybrid contribution 0.441 -0.569 0.455 0.852 sum -11.378 3.775 -13.769 18.257 Atomic orbital electron populations 1.22404 0.95130 1.02547 1.02632 1.21500 0.93306 0.96657 0.90171 0.92714 1.21474 0.96708 0.99048 0.95654 1.18746 0.92035 0.93173 0.95001 1.21827 0.92372 1.34392 1.09599 0.92975 1.25886 0.97492 0.96530 0.99714 1.70140 1.02254 1.45341 1.38725 0.85612 0.77735 0.78706 0.79948 1.19934 1.21104 1.18918 1.60176 1.59530 1.08786 1.02575 1.20641 0.93202 0.93927 0.90422 0.89493 1.22351 0.88965 0.92560 0.95594 1.86668 1.45477 1.57672 1.48907 1.20034 0.95446 0.93812 0.99136 1.20724 0.90789 1.00057 0.93227 1.21255 1.00259 0.93989 1.04233 1.17975 0.81826 0.90800 1.04448 1.91418 1.46558 1.80887 1.94597 1.21248 0.90817 1.01661 1.04199 1.21204 0.98111 0.93135 0.98500 0.92206 0.91135 0.91786 0.93824 0.93432 0.97077 1.01463 0.93394 0.83159 0.91263 0.91348 0.76191 0.86713 0.87322 0.82605 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.16 71.98 0.66 -3.07 16 2 C 0.09 2.94 2.40 44.91 0.11 3.05 16 3 H 0.05 1.91 7.71 -2.39 -0.02 1.89 16 4 C -0.09 -3.76 4.83 30.59 0.15 -3.62 16 5 C 0.05 2.60 4.86 29.85 0.15 2.74 16 6 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.92 -58.83 13.29 21.45 0.28 -58.54 16 10 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 14 N -0.68 -19.93 4.68 -473.32 -2.21 -22.15 16 15 C 0.13 3.01 2.46 44.17 0.11 3.12 16 16 H 0.09 1.61 6.93 -2.39 -0.02 1.59 16 17 C 0.08 1.46 6.55 71.98 0.47 1.93 16 18 O -0.58 -13.17 12.09 -148.98 -1.80 -14.97 16 19 C -0.08 -2.51 4.58 -19.86 -0.09 -2.61 16 20 C -0.03 -1.15 8.25 22.26 0.18 -0.97 16 21 C -0.18 -7.29 10.03 22.31 0.22 -7.06 16 22 C 0.07 2.49 7.30 22.38 0.16 2.66 16 23 F -0.16 -5.79 17.27 44.97 0.78 -5.02 16 24 C -0.16 -4.59 10.03 22.31 0.22 -4.37 16 25 C -0.09 -2.33 9.67 22.26 0.22 -2.11 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 1.21 7.43 -2.39 -0.02 1.19 16 28 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.01 0.64 7.21 -2.39 -0.02 0.62 16 32 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 33 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 34 H 0.35 8.97 7.97 -89.69 -0.72 8.25 16 35 H 0.07 0.89 8.04 -2.39 -0.02 0.87 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.39 5.10 9.12 -74.06 -0.68 4.42 16 38 H 0.11 5.16 7.03 -2.91 -0.02 5.14 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.17 2.73 8.04 -2.91 -0.02 2.70 16 Total: -1.00 -75.06 343.26 1.97 -73.09 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.36 Total: 20.97 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 3.25 Total: -41.90 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.93 Total: -80.69 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.80 Total: -14.97 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -75.06 1.97 -73.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.719 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds