Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99983 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99651 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47108 * 60.00138 * 10 8 6 12 12 H 1.48502 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47362 * 300.00520 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 C 1.52997 * 109.47029 * 180.02562 * 15 14 2 17 17 H 1.08995 * 109.47282 * 304.99481 * 16 15 14 18 18 O 1.42901 * 109.47222 * 64.99954 * 16 15 14 19 19 C 1.50703 * 109.46803 * 184.99599 * 16 15 14 20 20 C 1.38242 * 119.97533 * 279.71919 * 19 16 15 21 21 C 1.38204 * 120.02509 * 179.76487 * 20 19 16 22 22 C 1.38461 * 119.97292 * 0.52148 * 21 20 19 23 23 F 1.35094 * 120.02586 * 179.76580 * 22 21 20 24 24 C 1.38453 * 119.94702 * 359.73443 * 22 21 20 25 25 C 1.38203 * 119.98012 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 32 32 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 33 33 H 0.97001 * 119.99673 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00095 * 38.95609 * 14 2 1 35 35 H 1.09003 * 109.46826 * 299.99875 * 15 14 2 36 36 H 1.08993 * 109.47326 * 59.99934 * 15 14 2 37 37 H 0.96698 * 114.00460 * 59.99750 * 18 16 15 38 38 H 1.08002 * 119.98980 * 0.03234 * 20 19 16 39 39 H 1.08001 * 120.01195 * 180.25631 * 21 20 19 40 40 H 1.08002 * 120.01213 * 179.97438 * 24 22 21 41 41 H 1.07994 * 119.99153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0015 10 14 6.0409 -2.2398 -4.3417 11 1 5.4482 -1.6142 -5.5511 12 1 7.5208 -2.1339 -4.4051 13 1 5.6486 -3.6708 -4.2820 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5963 -0.5330 3.5741 17 1 1.9710 -1.4082 3.7500 18 8 3.9447 -0.9485 3.3477 19 6 2.5449 0.3714 4.7785 20 6 3.5435 1.3049 4.9845 21 6 3.4949 2.1380 6.0861 22 6 2.4510 2.0302 6.9893 23 9 2.4049 2.8408 8.0690 24 6 1.4543 1.0913 6.7848 25 6 1.5023 0.2625 5.6799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 7.2195 -0.8003 -2.1926 34 1 1.4497 -1.4979 1.4100 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 4.5586 -0.2196 3.1836 38 1 4.3598 1.3861 4.2819 39 1 4.2730 2.8700 6.2445 40 1 0.6398 1.0060 7.4890 41 1 0.7247 -0.4696 5.5200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -87.580701 kcal Electronic energy + Delta-G solvation = -21420.098713 eV Core-core repulsion = 18020.599325 eV Total energy + Delta-G solvation = -3399.499388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.14109 -39.83050 -37.59206 -36.19974 -33.20912 -31.99371 -31.37396 -30.77018 -29.05148 -26.64965 -24.99508 -23.47126 -22.99434 -21.30318 -21.26659 -19.73416 -18.12078 -17.07858 -16.74474 -16.10384 -15.84315 -15.56916 -15.08396 -15.02137 -14.67231 -14.35182 -13.90338 -13.83471 -13.36814 -13.08984 -12.95760 -12.83242 -12.47781 -12.34105 -12.05391 -11.65780 -11.39420 -11.36799 -11.15307 -11.07348 -10.81229 -10.45691 -10.32247 -9.91363 -9.59958 -9.39932 -9.18129 -8.89739 -8.80177 -8.19920 -7.86483 -5.85476 -3.86149 0.82833 0.94135 3.26372 3.40632 3.44723 3.47351 3.97481 4.17387 4.40772 4.53881 4.56736 4.58858 4.85927 4.94089 4.96185 5.13005 5.22633 5.34822 5.50065 5.53978 5.56953 5.63389 5.66568 5.71290 5.82324 5.88396 5.94669 6.08348 6.25005 6.29518 6.40492 6.58692 6.67838 6.90349 7.32233 7.47086 7.72109 7.84188 7.87524 8.11178 8.28150 8.61049 9.22559 9.76060 11.25580 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.003185 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.506300 B = 8789.385754 C = 9538.086750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.661 5.661 15 C 0.034 3.966 16 C 0.152 3.848 17 H 0.104 0.896 18 O -0.536 6.536 19 C -0.120 4.120 20 C -0.080 4.080 21 C -0.149 4.149 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.153 4.153 25 C -0.082 4.082 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.035 0.965 33 H 0.258 0.742 34 H 0.335 0.665 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.375 0.625 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 5.150 17.441 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.291 5.291 15 C -0.096 4.096 16 C 0.092 3.908 17 H 0.122 0.878 18 O -0.341 6.341 19 C -0.121 4.121 20 C -0.098 4.098 21 C -0.168 4.168 22 C 0.073 3.927 23 F -0.121 7.121 24 C -0.172 4.172 25 C -0.100 4.100 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.224 0.776 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.135 4.708 17.420 20.696 hybrid contribution -0.401 0.458 -0.462 0.765 sum -10.537 5.166 16.957 20.622 Atomic orbital electron populations 1.22547 0.98698 1.01547 1.01214 1.21753 0.90823 0.98298 0.91672 0.91154 1.21628 1.00716 0.98368 0.92895 1.18989 0.88221 0.96336 0.97135 1.21313 0.91838 1.34126 1.08445 0.93243 1.24986 0.97134 0.95790 0.96483 1.69965 1.02147 1.44394 1.36902 0.86750 0.77561 0.80332 0.83841 1.20496 1.21416 1.20375 1.60422 1.57726 1.08530 1.02455 1.22652 0.99585 0.96221 0.91109 1.20766 0.85660 0.95369 0.89001 0.87802 1.86680 1.17052 1.37027 1.93362 1.20790 0.95448 0.97954 0.97954 1.20860 0.98432 0.93756 0.96770 1.21149 0.98653 1.01819 0.95192 1.17747 0.97135 0.92131 0.85650 1.91494 1.96422 1.71305 1.52861 1.21126 0.99289 0.96851 0.99935 1.20877 0.97878 0.98377 0.92889 0.93848 0.92247 0.92732 0.93459 0.93622 0.97684 0.94628 0.93243 0.84693 0.90553 0.95082 0.77644 0.84671 0.84563 0.84747 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.16 37.16 0.34 -2.02 16 2 C 0.08 1.37 2.59 -67.71 -0.18 1.19 16 3 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 10 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -10.15 5.65 -106.73 -0.60 -10.75 16 15 C 0.03 0.43 5.10 -3.83 -0.02 0.41 16 16 C 0.15 1.74 3.39 -27.88 -0.09 1.64 16 17 H 0.10 1.12 8.00 -51.93 -0.42 0.70 16 18 O -0.54 -7.59 13.13 -35.23 -0.46 -8.06 16 19 C -0.12 -1.21 4.97 -104.62 -0.52 -1.73 16 20 C -0.08 -0.78 9.32 -39.59 -0.37 -1.15 16 21 C -0.15 -1.43 10.03 -39.51 -0.40 -1.82 16 22 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 23 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 24 C -0.15 -1.38 10.03 -39.51 -0.40 -1.77 16 25 C -0.08 -0.73 9.67 -39.59 -0.38 -1.11 16 26 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.34 4.70 8.47 -39.29 -0.33 4.37 16 35 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 36 H 0.03 0.35 7.44 -51.93 -0.39 -0.04 16 37 H 0.38 4.49 7.49 45.56 0.34 4.83 16 38 H 0.14 1.13 6.77 -52.49 -0.36 0.78 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.91 8.04 -52.49 -0.42 0.49 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -32.51 346.14 -8.75 -41.27 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.68 Total: 4.30 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -2.98 Total: -21.00 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.13 Total: -37.37 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.46 Total: -8.06 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.51 -8.75 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.312 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds