Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99983 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99651 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47108 * 60.00138 * 10 8 6 12 12 H 1.48502 * 109.47374 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47362 * 300.00520 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 C 1.52997 * 109.47029 * 180.02562 * 15 14 2 17 17 H 1.08995 * 109.47282 * 304.99481 * 16 15 14 18 18 O 1.42901 * 109.47222 * 64.99954 * 16 15 14 19 19 C 1.50703 * 109.46803 * 184.99599 * 16 15 14 20 20 C 1.38242 * 119.97533 * 279.71919 * 19 16 15 21 21 C 1.38204 * 120.02509 * 179.76487 * 20 19 16 22 22 C 1.38461 * 119.97292 * 0.52148 * 21 20 19 23 23 F 1.35094 * 120.02586 * 179.76580 * 22 21 20 24 24 C 1.38453 * 119.94702 * 359.73443 * 22 21 20 25 25 C 1.38203 * 119.98012 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 32 32 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 33 33 H 0.97001 * 119.99673 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00095 * 38.95609 * 14 2 1 35 35 H 1.09003 * 109.46826 * 299.99875 * 15 14 2 36 36 H 1.08993 * 109.47326 * 59.99934 * 15 14 2 37 37 H 0.96698 * 114.00460 * 59.99750 * 18 16 15 38 38 H 1.08002 * 119.98980 * 0.03234 * 20 19 16 39 39 H 1.08001 * 120.01195 * 180.25631 * 21 20 19 40 40 H 1.08002 * 120.01213 * 179.97438 * 24 22 21 41 41 H 1.07994 * 119.99153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0015 10 14 6.0409 -2.2398 -4.3417 11 1 5.4482 -1.6142 -5.5511 12 1 7.5208 -2.1339 -4.4051 13 1 5.6486 -3.6708 -4.2820 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5963 -0.5330 3.5741 17 1 1.9710 -1.4082 3.7500 18 8 3.9447 -0.9485 3.3477 19 6 2.5449 0.3714 4.7785 20 6 3.5435 1.3049 4.9845 21 6 3.4949 2.1380 6.0861 22 6 2.4510 2.0302 6.9893 23 9 2.4049 2.8408 8.0690 24 6 1.4543 1.0913 6.7848 25 6 1.5023 0.2625 5.6799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 7.2195 -0.8003 -2.1926 34 1 1.4497 -1.4979 1.4100 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 4.5586 -0.2196 3.1836 38 1 4.3598 1.3861 4.2819 39 1 4.2730 2.8700 6.2445 40 1 0.6398 1.0060 7.4890 41 1 0.7247 -0.4696 5.5200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = -109.081969 kcal Electronic energy + Delta-G solvation = -21421.031078 eV Core-core repulsion = 18020.599325 eV Total energy + Delta-G solvation = -3400.431753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92985 -40.63886 -38.70670 -37.35291 -35.21226 -33.31554 -32.17729 -31.91472 -30.54040 -27.62952 -26.89712 -24.30435 -23.88558 -23.03265 -22.18342 -21.22937 -18.89523 -18.33353 -18.01000 -17.54486 -16.67278 -16.59854 -16.43191 -16.22817 -16.02677 -15.48812 -14.99426 -14.58638 -14.48112 -14.36211 -14.08745 -13.92931 -13.83511 -13.65419 -13.20899 -13.16423 -12.85790 -12.78626 -12.55806 -12.32570 -12.15493 -11.90213 -11.83570 -11.49487 -11.19240 -11.07130 -10.83513 -10.44384 -10.10045 -9.59837 -9.04699 -8.10449 -6.20301 0.06896 0.24139 1.41207 1.44473 1.51982 2.45993 2.51997 3.15089 3.21664 3.27498 3.61078 3.72954 3.86845 3.94088 4.03289 4.13083 4.19472 4.31169 4.36779 4.44206 4.50791 4.68315 4.81243 4.88097 4.94437 4.97954 5.02116 5.09038 5.12229 5.13190 5.22504 5.31676 5.50314 5.51730 5.62366 5.87087 5.92937 6.08225 6.29000 6.38641 6.64896 6.84516 6.99462 7.47185 9.00389 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.003185 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.506300 B = 8789.385754 C = 9538.086750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.058 0.942 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.545 4.545 7 H 0.053 0.947 8 C -0.001 4.001 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.269 1.269 14 N -0.684 5.684 15 C 0.041 3.959 16 C 0.158 3.842 17 H 0.114 0.886 18 O -0.562 6.562 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.077 3.923 23 F -0.149 7.149 24 C -0.152 4.152 25 C -0.080 4.080 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.047 0.953 31 H -0.025 1.025 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.343 0.657 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.380 0.620 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 4.591 17.504 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.198 4.198 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.194 1.194 14 N -0.315 5.315 15 C -0.088 4.088 16 C 0.098 3.902 17 H 0.132 0.868 18 O -0.369 6.369 19 C -0.128 4.128 20 C -0.108 4.108 21 C -0.174 4.174 22 C 0.058 3.942 23 F -0.128 7.128 24 C -0.171 4.171 25 C -0.098 4.098 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.065 0.935 31 H -0.006 1.006 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.229 0.771 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.725 4.154 17.489 21.462 hybrid contribution 0.114 0.650 -0.447 0.797 sum -11.611 4.804 17.042 21.173 Atomic orbital electron populations 1.22393 0.95428 1.02526 1.02427 1.21502 0.93265 0.96806 0.90269 0.92365 1.21462 0.96631 0.99028 0.95562 1.18799 0.92130 0.93679 0.95027 1.21797 0.92485 1.34507 1.09489 0.92855 1.25926 0.97431 0.96533 0.99924 1.70108 1.02485 1.45559 1.38871 0.85605 0.77014 0.79280 0.79741 1.19322 1.20890 1.19397 1.60285 1.58493 1.09575 1.03195 1.22604 1.00361 0.95405 0.90446 1.20781 0.84434 0.95898 0.89053 0.86826 1.86637 1.18518 1.38154 1.93544 1.20706 0.96264 0.97996 0.97866 1.20996 0.98776 0.93911 0.97071 1.21303 0.99015 1.02060 0.95051 1.18002 0.97856 0.92649 0.85706 1.91476 1.96502 1.71595 1.53183 1.21382 0.99404 0.96095 1.00211 1.21137 0.97886 0.98535 0.92215 0.91745 0.91917 0.91853 0.93531 0.93465 1.00644 0.97486 0.93092 0.83779 0.91994 0.92992 0.77090 0.84204 0.83491 0.82677 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.16 71.98 0.66 -3.31 16 2 C 0.09 2.92 2.59 44.92 0.12 3.03 16 3 H 0.06 1.99 7.80 -2.39 -0.02 1.97 16 4 C -0.09 -3.66 4.83 30.60 0.15 -3.51 16 5 C 0.04 2.21 4.86 29.85 0.15 2.35 16 6 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 7 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 10 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 N -0.68 -20.64 5.65 -491.58 -2.78 -23.42 16 15 C 0.04 0.99 5.10 86.30 0.44 1.43 16 16 C 0.16 3.47 3.39 29.85 0.10 3.57 16 17 H 0.11 2.25 8.00 -2.39 -0.02 2.23 16 18 O -0.56 -16.13 13.13 -148.98 -1.96 -18.08 16 19 C -0.13 -2.41 4.97 -19.86 -0.10 -2.51 16 20 C -0.09 -1.70 9.32 22.26 0.21 -1.49 16 21 C -0.16 -2.88 10.03 22.31 0.22 -2.66 16 22 C 0.08 1.47 7.30 22.37 0.16 1.64 16 23 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 24 C -0.15 -2.43 10.03 22.31 0.22 -2.20 16 25 C -0.08 -1.24 9.67 22.26 0.22 -1.03 16 26 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 32 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.34 9.18 8.47 -89.69 -0.76 8.42 16 35 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 36 H 0.05 1.05 7.44 -2.39 -0.02 1.03 16 37 H 0.38 9.55 7.49 -74.06 -0.56 8.99 16 38 H 0.14 2.41 6.77 -2.91 -0.02 2.39 16 39 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.16 1.63 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -70.45 346.14 1.31 -69.14 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.29 Total: 20.98 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.24 Total: -36.11 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.49 Total: -81.17 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.96 Total: -18.08 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.45 1.31 -69.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.943 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds