Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99813 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46815 * 60.00509 * 10 8 6 12 12 H 1.48500 * 109.46814 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47170 * 300.00158 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.52994 * 109.47637 * 180.02562 * 15 14 2 17 17 H 1.08997 * 109.47237 * 59.99919 * 16 15 14 18 18 O 1.42899 * 109.46758 * 300.00240 * 16 15 14 19 19 C 1.50698 * 109.47254 * 180.02562 * 16 15 14 20 20 C 1.38237 * 119.97671 * 84.72923 * 19 16 15 21 21 C 1.38198 * 120.02801 * 179.72312 * 20 19 16 22 22 C 1.38453 * 119.97144 * 0.52577 * 21 20 19 23 23 F 1.35100 * 120.02416 * 179.72274 * 22 21 20 24 24 C 1.38458 * 119.95394 * 359.74826 * 22 21 20 25 25 C 1.38205 * 119.96921 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 30 30 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 31 31 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 32 32 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 33 33 H 0.96995 * 119.99701 * 179.97438 * 9 8 6 34 34 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 35 35 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 36 36 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 37 37 H 0.96697 * 114.00439 * 299.99495 * 18 16 15 38 38 H 1.08007 * 119.98606 * 359.97053 * 20 19 16 39 39 H 1.08002 * 120.01683 * 180.28968 * 21 20 19 40 40 H 1.07994 * 120.01955 * 179.97438 * 24 22 21 41 41 H 1.07998 * 119.98503 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 6.2690 -0.7760 2.0007 10 14 6.0410 -2.2420 4.3405 11 1 5.6476 -3.6727 4.2812 12 1 7.5210 -2.1373 4.4029 13 1 5.4494 -1.6155 5.5499 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5952 -0.5332 -3.5744 17 1 1.9185 -1.3566 -3.8030 18 8 3.9000 -1.0498 -3.3051 19 6 2.6602 0.4057 -4.7514 20 6 3.7727 1.2051 -4.9366 21 6 3.8360 2.0623 -6.0188 22 6 2.7798 2.1282 -6.9115 23 9 2.8381 2.9700 -7.9667 24 6 1.6635 1.3313 -6.7220 25 6 1.6050 0.4706 -5.6422 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 7.2196 -0.8019 2.1917 34 1 1.4496 -1.4979 -1.4100 35 1 1.0872 0.6163 -2.5525 36 1 2.7590 1.0462 -2.1182 37 1 4.5557 -0.3713 -3.0934 38 1 4.5946 1.1567 -4.2375 39 1 4.7072 2.6833 -6.1659 40 1 0.8389 1.3822 -7.4174 41 1 0.7346 -0.1514 -5.4943 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = -108.618902 kcal Electronic energy + Delta-G solvation = -21441.415935 eV Core-core repulsion = 18041.004263 eV Total energy + Delta-G solvation = -3400.411673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.92702 -40.63830 -38.70510 -37.33834 -35.20836 -33.30991 -32.17744 -31.90335 -30.53763 -27.64133 -26.89723 -24.24938 -23.91071 -23.02969 -22.17979 -21.22415 -18.90556 -18.33228 -17.98803 -17.54980 -16.67145 -16.59723 -16.42608 -16.23119 -16.02935 -15.50224 -14.97606 -14.58879 -14.47786 -14.35051 -14.09049 -13.94106 -13.79939 -13.65202 -13.20005 -13.16461 -12.86311 -12.79060 -12.55704 -12.32464 -12.13336 -11.89741 -11.82863 -11.49278 -11.19048 -11.07107 -10.83739 -10.44277 -10.09913 -9.58960 -9.04147 -8.10424 -6.20149 0.07240 0.24306 1.41261 1.44487 1.51972 2.46037 2.52100 3.15246 3.21751 3.27777 3.60350 3.73911 3.87531 3.94209 4.04493 4.13645 4.18723 4.31318 4.36597 4.44662 4.51179 4.69178 4.81436 4.88104 4.94601 4.98318 5.02244 5.09362 5.12436 5.13374 5.22846 5.31906 5.50498 5.51830 5.62488 5.87311 5.93110 6.08328 6.29328 6.38803 6.65345 6.84432 6.99515 7.47300 9.00410 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.003245 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.930608 B = 8626.152986 C = 9436.795035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.058 0.942 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.000 4.000 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.683 5.683 15 C 0.041 3.959 16 C 0.157 3.843 17 H 0.116 0.884 18 O -0.561 6.561 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.156 4.156 22 C 0.076 3.924 23 F -0.149 7.149 24 C -0.152 4.152 25 C -0.080 4.080 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.007 0.993 32 H -0.025 1.025 33 H 0.260 0.740 34 H 0.343 0.657 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.380 0.620 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 4.675 -17.407 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.198 4.198 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.314 5.314 15 C -0.089 4.089 16 C 0.098 3.902 17 H 0.133 0.867 18 O -0.367 6.367 19 C -0.128 4.128 20 C -0.108 4.108 21 C -0.175 4.175 22 C 0.057 3.943 23 F -0.128 7.128 24 C -0.170 4.170 25 C -0.098 4.098 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.026 0.974 32 H -0.006 1.006 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.174 0.826 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.490 4.262 -17.420 21.299 hybrid contribution 0.200 0.635 0.487 0.825 sum -11.290 4.897 -16.932 20.932 Atomic orbital electron populations 1.22393 0.95433 1.02516 1.02438 1.21502 0.93266 0.96791 0.90282 0.92387 1.21461 0.96648 0.99017 0.95556 1.18800 0.92120 0.93668 0.95048 1.21798 0.92475 1.34434 1.09571 0.92881 1.25918 0.97426 0.96536 0.99898 1.70100 1.02483 1.45533 1.38883 0.85611 0.77019 0.79282 0.79764 1.19403 1.20883 1.19346 1.60268 1.58495 1.09534 1.03134 1.22599 1.00402 0.95370 0.90495 1.20787 0.85627 0.94592 0.89199 0.86669 1.86622 1.19829 1.38482 1.91814 1.20715 0.95520 0.98531 0.98035 1.20987 0.98409 0.94316 0.97131 1.21296 0.99217 1.01677 0.95277 1.18002 0.97041 0.92718 0.86503 1.91477 1.96799 1.69432 1.55060 1.21384 0.98053 0.97215 1.00394 1.21128 0.98633 0.97640 0.92377 0.91712 0.91871 0.91931 0.93492 0.93549 0.97426 1.00646 0.93092 0.83777 0.92880 0.92145 0.77111 0.84332 0.83575 0.82634 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.16 71.98 0.66 -3.30 16 2 C 0.09 2.91 2.59 44.92 0.12 3.03 16 3 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 4 C -0.09 -3.66 4.83 30.59 0.15 -3.51 16 5 C 0.04 2.20 4.86 29.85 0.15 2.35 16 6 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 7 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 10 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 N -0.68 -20.53 5.57 -491.57 -2.74 -23.27 16 15 C 0.04 0.98 5.13 86.30 0.44 1.42 16 16 C 0.16 3.44 3.42 29.85 0.10 3.54 16 17 H 0.12 2.22 8.05 -2.39 -0.02 2.20 16 18 O -0.56 -16.09 13.00 -148.98 -1.94 -18.03 16 19 C -0.13 -2.43 5.00 -19.86 -0.10 -2.53 16 20 C -0.09 -1.77 9.32 22.26 0.21 -1.56 16 21 C -0.16 -2.97 10.03 22.31 0.22 -2.75 16 22 C 0.08 1.49 7.30 22.37 0.16 1.65 16 23 F -0.15 -3.13 17.27 44.97 0.78 -2.36 16 24 C -0.15 -2.44 10.03 22.31 0.22 -2.21 16 25 C -0.08 -1.24 9.68 22.26 0.22 -1.02 16 26 H 0.06 1.26 7.45 -2.39 -0.02 1.25 16 27 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.01 0.43 7.75 -2.39 -0.02 0.41 16 32 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.34 9.20 8.47 -89.69 -0.76 8.44 16 35 H 0.05 1.05 7.44 -2.38 -0.02 1.03 16 36 H 0.06 1.63 8.06 -2.38 -0.02 1.61 16 37 H 0.38 9.81 7.39 -74.06 -0.55 9.26 16 38 H 0.14 2.52 6.62 -2.91 -0.02 2.50 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -70.04 345.85 1.38 -68.66 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.28 Total: 21.34 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.24 Total: -36.25 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.45 Total: -80.86 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.94 Total: -18.03 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.04 1.38 -68.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.954 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds