Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 5 5 C 1.53001 * 109.47260 * 174.99789 * 4 2 1 6 6 C 1.50704 * 109.47240 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99893 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00152 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46854 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47116 * 119.99890 * 10 8 6 13 13 H 1.48506 * 109.46854 * 239.99867 * 10 8 6 14 14 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 15 15 C 1.46902 * 110.99800 * 275.00438 * 14 2 1 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 2 17 17 H 1.09001 * 109.46801 * 59.99937 * 16 15 14 18 18 O 1.42895 * 109.47036 * 299.99568 * 16 15 14 19 19 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 20 20 C 1.38249 * 119.97551 * 84.72541 * 19 16 15 21 21 C 1.38200 * 120.02668 * 179.72413 * 20 19 16 22 22 C 1.38459 * 119.96868 * 0.52973 * 21 20 19 23 23 F 1.35107 * 120.02208 * 179.72796 * 22 21 20 24 24 C 1.38460 * 119.95639 * 359.74237 * 22 21 20 25 25 C 1.38198 * 119.97069 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 27 27 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 29 29 H 1.09004 * 109.46849 * 294.99513 * 4 2 1 30 30 H 1.08998 * 109.47648 * 54.99485 * 4 2 1 31 31 H 1.08993 * 109.47359 * 299.99792 * 5 4 2 32 32 H 1.09007 * 109.47040 * 59.99907 * 5 4 2 33 33 H 0.96991 * 119.99968 * 180.02562 * 9 8 6 34 34 H 1.00904 * 110.99696 * 151.04867 * 14 2 1 35 35 H 1.08993 * 109.47737 * 60.00169 * 15 14 2 36 36 H 1.09000 * 109.47263 * 299.99731 * 15 14 2 37 37 H 0.96695 * 114.00385 * 300.00682 * 18 16 15 38 38 H 1.08001 * 119.98287 * 359.97438 * 20 19 16 39 39 H 1.07992 * 120.01510 * 180.29551 * 21 20 19 40 40 H 1.08000 * 120.01616 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98829 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6132 -1.3136 6 6 4.0673 -1.3242 -2.5437 7 1 3.3689 -1.8054 -3.2124 8 6 5.4186 -1.3613 -2.8149 9 7 6.2691 -0.7758 -2.0003 10 14 6.0413 -2.2420 -4.3400 11 1 4.8914 -2.8135 -5.0858 12 1 6.7648 -1.2781 -5.2075 13 1 6.9630 -3.3352 -3.9387 14 7 2.0197 -0.6924 1.1996 15 6 2.0823 0.2229 2.3469 16 6 2.5961 -0.5325 3.5743 17 1 3.5916 -0.9258 3.3683 18 8 1.7099 -1.6125 3.8744 19 6 2.6611 0.4065 4.7512 20 6 1.5334 0.6308 5.5189 21 6 1.5932 1.4873 6.6018 22 6 2.7803 2.1293 6.9111 23 9 2.8385 2.9711 7.9663 24 6 3.9076 1.9083 6.1382 25 6 3.8467 1.0477 5.0586 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0727 -0.4257 33 1 7.2197 -0.8016 -2.1912 34 1 2.9173 -1.1204 1.0289 35 1 1.0870 0.6166 2.5525 36 1 2.7587 1.0465 2.1182 37 1 0.8039 -1.3356 4.0683 38 1 0.6064 0.1333 5.2746 39 1 0.7134 1.6587 7.2042 40 1 4.8340 2.4089 6.3784 41 1 4.7257 0.8754 4.4553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -90.430229 kcal Electronic energy + Delta-G solvation = -21394.775708 eV Core-core repulsion = 17995.152755 eV Total energy + Delta-G solvation = -3399.622953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.12403 -39.83744 -37.59997 -36.27227 -33.26287 -32.06458 -31.35093 -30.75751 -29.22250 -26.76208 -25.07896 -23.39958 -22.99208 -21.38822 -21.22851 -19.52355 -18.13071 -17.09380 -16.79411 -16.43014 -15.82712 -15.65416 -15.25345 -14.81062 -14.66379 -14.48830 -14.13118 -13.80828 -13.27822 -13.15769 -12.92157 -12.63749 -12.51796 -12.23214 -12.18353 -11.67415 -11.44021 -11.32612 -11.18848 -11.00860 -10.94500 -10.53609 -10.41057 -9.97300 -9.77992 -9.38474 -9.29340 -9.04615 -8.79568 -8.38000 -7.99511 -6.02986 -4.04684 0.84171 0.95689 3.27583 3.29862 3.37566 3.41949 3.98622 4.20438 4.39980 4.44545 4.45975 4.60312 4.89054 4.96286 4.98231 5.15620 5.24259 5.33385 5.49873 5.59853 5.66958 5.70499 5.80560 5.83795 5.85487 5.89961 5.96742 6.15095 6.29432 6.33350 6.49274 6.51617 6.60239 6.89046 7.06169 7.43873 7.58301 7.63475 7.77090 7.88176 7.97125 8.40440 9.02116 9.59755 11.08337 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.003203 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.749314 B = 8739.751562 C = 9531.907188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.677 5.677 15 C 0.033 3.967 16 C 0.150 3.850 17 H 0.110 0.890 18 O -0.538 6.538 19 C -0.119 4.119 20 C -0.083 4.083 21 C -0.152 4.152 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.150 4.150 25 C -0.079 4.079 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.354 0.646 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.369 0.631 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 5.228 16.711 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.312 5.312 15 C -0.097 4.097 16 C 0.090 3.910 17 H 0.128 0.872 18 O -0.343 6.343 19 C -0.121 4.121 20 C -0.101 4.101 21 C -0.170 4.170 22 C 0.073 3.927 23 F -0.121 7.121 24 C -0.169 4.169 25 C -0.097 4.097 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.176 0.824 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.216 0.784 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.333 4.685 16.824 19.802 hybrid contribution 0.845 0.778 -0.710 1.350 sum -8.488 5.462 16.115 19.015 Atomic orbital electron populations 1.21782 0.95781 1.01735 1.00028 1.21619 0.94520 0.95990 0.90627 0.94599 1.21825 0.99643 0.99530 0.94230 1.19132 0.88804 0.96789 0.96961 1.21276 0.91955 1.34056 1.08313 0.92609 1.25025 0.97097 0.95622 0.96735 1.69963 1.02314 1.44239 1.37065 0.86542 0.78864 0.79472 0.83176 1.19726 1.21080 1.20993 1.60527 1.34950 1.31823 1.03870 1.22621 1.00691 0.94601 0.91757 1.20837 0.95322 0.85735 0.89070 0.87188 1.86677 1.22919 1.32798 1.91860 1.20747 0.93914 0.99030 0.98360 1.20753 0.98360 0.96910 0.94074 1.21093 0.97172 0.99177 0.99599 1.17752 0.95329 0.92753 0.86843 1.91498 1.97100 1.68905 1.54586 1.21169 0.98070 1.01107 0.96571 1.20966 0.97991 0.94885 0.95895 0.93069 0.92269 0.94002 0.92359 0.92753 0.97025 0.96652 0.93101 0.82446 0.91167 0.94368 0.78418 0.85035 0.84715 0.84573 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.41 37.16 0.35 -1.56 16 2 C 0.08 1.37 2.65 -67.72 -0.18 1.19 16 3 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.31 4.74 -26.73 -0.13 -2.44 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.37 16 6 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.68 -10.78 6.18 -106.72 -0.66 -11.44 16 15 C 0.03 0.43 5.13 -3.82 -0.02 0.41 16 16 C 0.15 1.77 3.41 -27.88 -0.10 1.67 16 17 H 0.11 1.39 8.05 -51.93 -0.42 0.98 16 18 O -0.54 -6.58 13.00 -35.23 -0.46 -7.04 16 19 C -0.12 -1.24 5.00 -104.61 -0.52 -1.76 16 20 C -0.08 -0.75 9.33 -39.59 -0.37 -1.12 16 21 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 22 C 0.09 0.95 7.30 -39.42 -0.29 0.67 16 23 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 24 C -0.15 -1.48 10.03 -39.51 -0.40 -1.88 16 25 C -0.08 -0.81 9.68 -39.59 -0.38 -1.19 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.02 0.40 6.43 -51.92 -0.33 0.06 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.35 6.39 6.47 -39.29 -0.25 6.14 16 35 H 0.07 0.83 7.44 -51.93 -0.39 0.44 16 36 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 37 H 0.37 3.23 7.40 45.56 0.34 3.57 16 38 H 0.13 0.88 6.62 -52.49 -0.35 0.53 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.66 343.32 -8.70 -39.36 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.54 Total: 5.39 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.97 Total: -20.72 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.08 Total: -37.19 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.46 Total: -7.04 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.66 -8.70 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.068 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds