Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 5 5 C 1.53001 * 109.47260 * 174.99789 * 4 2 1 6 6 C 1.50704 * 109.47240 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00196 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99893 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00152 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46854 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47116 * 119.99890 * 10 8 6 13 13 H 1.48506 * 109.46854 * 239.99867 * 10 8 6 14 14 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 15 15 C 1.46902 * 110.99800 * 275.00438 * 14 2 1 16 16 C 1.53006 * 109.46626 * 180.02562 * 15 14 2 17 17 H 1.09001 * 109.46801 * 59.99937 * 16 15 14 18 18 O 1.42895 * 109.47036 * 299.99568 * 16 15 14 19 19 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 20 20 C 1.38249 * 119.97551 * 84.72541 * 19 16 15 21 21 C 1.38200 * 120.02668 * 179.72413 * 20 19 16 22 22 C 1.38459 * 119.96868 * 0.52973 * 21 20 19 23 23 F 1.35107 * 120.02208 * 179.72796 * 22 21 20 24 24 C 1.38460 * 119.95639 * 359.74237 * 22 21 20 25 25 C 1.38198 * 119.97069 * 0.02562 * 24 22 21 26 26 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 27 27 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 29 29 H 1.09004 * 109.46849 * 294.99513 * 4 2 1 30 30 H 1.08998 * 109.47648 * 54.99485 * 4 2 1 31 31 H 1.08993 * 109.47359 * 299.99792 * 5 4 2 32 32 H 1.09007 * 109.47040 * 59.99907 * 5 4 2 33 33 H 0.96991 * 119.99968 * 180.02562 * 9 8 6 34 34 H 1.00904 * 110.99696 * 151.04867 * 14 2 1 35 35 H 1.08993 * 109.47737 * 60.00169 * 15 14 2 36 36 H 1.09000 * 109.47263 * 299.99731 * 15 14 2 37 37 H 0.96695 * 114.00385 * 300.00682 * 18 16 15 38 38 H 1.08001 * 119.98287 * 359.97438 * 20 19 16 39 39 H 1.07992 * 120.01510 * 180.29551 * 21 20 19 40 40 H 1.08000 * 120.01616 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98829 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6132 -1.3136 6 6 4.0673 -1.3242 -2.5437 7 1 3.3689 -1.8054 -3.2124 8 6 5.4186 -1.3613 -2.8149 9 7 6.2691 -0.7758 -2.0003 10 14 6.0413 -2.2420 -4.3400 11 1 4.8914 -2.8135 -5.0858 12 1 6.7648 -1.2781 -5.2075 13 1 6.9630 -3.3352 -3.9387 14 7 2.0197 -0.6924 1.1996 15 6 2.0823 0.2229 2.3469 16 6 2.5961 -0.5325 3.5743 17 1 3.5916 -0.9258 3.3683 18 8 1.7099 -1.6125 3.8744 19 6 2.6611 0.4065 4.7512 20 6 1.5334 0.6308 5.5189 21 6 1.5932 1.4873 6.6018 22 6 2.7803 2.1293 6.9111 23 9 2.8385 2.9711 7.9663 24 6 3.9076 1.9083 6.1382 25 6 3.8467 1.0477 5.0586 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0727 -0.4257 33 1 7.2197 -0.8016 -2.1912 34 1 2.9173 -1.1204 1.0289 35 1 1.0870 0.6166 2.5525 36 1 2.7587 1.0465 2.1182 37 1 0.8039 -1.3356 4.0683 38 1 0.6064 0.1333 5.2746 39 1 0.7134 1.6587 7.2042 40 1 4.8340 2.4089 6.3784 41 1 4.7257 0.8754 4.4553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -110.075463 kcal Electronic energy + Delta-G solvation = -21395.627589 eV Core-core repulsion = 17995.152755 eV Total energy + Delta-G solvation = -3400.474834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.93038 -40.66415 -38.75922 -37.41144 -35.20673 -33.32794 -32.16656 -31.89751 -30.73271 -27.80798 -26.91180 -24.26452 -23.94139 -23.09636 -22.13439 -20.99989 -18.91070 -18.54699 -17.96670 -17.61431 -16.84088 -16.63301 -16.55887 -16.25311 -16.01391 -15.55616 -15.15553 -14.53865 -14.47251 -14.38049 -14.18608 -14.05574 -13.82430 -13.31836 -13.24174 -13.13587 -12.97126 -12.85260 -12.55507 -12.32313 -12.15239 -11.93832 -11.89579 -11.58170 -11.33062 -10.99665 -10.89972 -10.54690 -10.11033 -9.60486 -9.28065 -8.20374 -6.30279 0.05792 0.23207 1.39212 1.40129 1.52932 2.40858 2.50711 3.11091 3.14452 3.26276 3.54181 3.72652 3.83736 3.91942 4.03860 4.09252 4.20629 4.30893 4.38668 4.40768 4.51418 4.70907 4.79781 4.84623 4.92232 4.96054 5.02801 5.06757 5.09701 5.11326 5.21221 5.23475 5.46794 5.50099 5.54949 5.71224 5.84902 5.86155 6.22532 6.26764 6.42245 6.86209 6.89353 7.38761 8.91077 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.003203 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.749314 B = 8739.751562 C = 9531.907188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.086 3.914 3 H 0.027 0.973 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.678 5.678 15 C 0.037 3.963 16 C 0.161 3.839 17 H 0.093 0.907 18 O -0.552 6.552 19 C -0.127 4.127 20 C -0.080 4.080 21 C -0.150 4.150 22 C 0.077 3.923 23 F -0.148 7.148 24 C -0.156 4.156 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.056 0.944 31 H -0.016 1.016 32 H 0.000 1.000 33 H 0.263 0.737 34 H 0.337 0.663 35 H 0.090 0.910 36 H 0.027 0.973 37 H 0.384 0.616 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 5.003 16.877 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.311 5.311 15 C -0.093 4.093 16 C 0.101 3.899 17 H 0.111 0.889 18 O -0.359 6.359 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.168 4.168 22 C 0.058 3.942 23 F -0.127 7.127 24 C -0.175 4.175 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.002 0.998 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.234 0.766 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.932 4.469 16.999 20.699 hybrid contribution 1.335 0.866 -0.719 1.746 sum -9.598 5.336 16.280 19.637 Atomic orbital electron populations 1.21696 0.92992 1.02180 1.01550 1.21559 0.96578 0.94815 0.89424 0.95521 1.21645 0.96138 0.99849 0.96376 1.19006 0.92159 0.94406 0.95426 1.21719 0.92501 1.34370 1.09337 0.92497 1.25929 0.97395 0.96367 0.99986 1.70083 1.02697 1.45395 1.38915 0.85449 0.78402 0.78300 0.79211 1.18756 1.20459 1.20392 1.60630 1.33772 1.32392 1.04315 1.22683 1.01617 0.93871 0.91113 1.20582 0.94496 0.85680 0.89148 0.88938 1.86648 1.24147 1.33221 1.91878 1.20663 0.94698 0.99154 0.98313 1.21032 0.98815 0.96501 0.93399 1.21366 0.97452 0.98406 0.99597 1.18001 0.96074 0.93153 0.86935 1.91482 1.97172 1.69173 1.54876 1.21314 0.98697 1.01087 0.96400 1.21083 0.98325 0.95251 0.96266 0.92166 0.92311 0.91913 0.92722 0.92574 0.99774 0.98184 0.92862 0.84333 0.89152 0.95453 0.76586 0.82369 0.82502 0.83482 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.41 71.98 0.68 -2.58 16 2 C 0.09 2.82 2.65 44.91 0.12 2.94 16 3 H 0.03 0.93 7.80 -2.38 -0.02 0.91 16 4 C -0.10 -4.15 4.74 30.59 0.15 -4.00 16 5 C 0.03 1.40 4.80 29.85 0.14 1.55 16 6 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 10 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 N -0.68 -21.42 6.18 -491.56 -3.04 -24.45 16 15 C 0.04 0.93 5.13 86.31 0.44 1.37 16 16 C 0.16 3.69 3.41 29.85 0.10 3.80 16 17 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 18 O -0.55 -12.69 13.00 -148.98 -1.94 -14.62 16 19 C -0.13 -2.51 5.00 -19.86 -0.10 -2.61 16 20 C -0.08 -1.25 9.33 22.26 0.21 -1.04 16 21 C -0.15 -2.40 10.03 22.31 0.22 -2.18 16 22 C 0.08 1.51 7.30 22.38 0.16 1.67 16 23 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 24 C -0.16 -3.00 10.03 22.31 0.22 -2.78 16 25 C -0.09 -1.84 9.68 22.26 0.22 -1.62 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.37 7.45 -2.39 -0.02 1.35 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.00 0.00 6.43 -2.38 -0.02 -0.02 16 33 H 0.26 14.85 8.31 -92.72 -0.77 14.08 16 34 H 0.34 12.56 6.47 -89.69 -0.58 11.98 16 35 H 0.09 1.91 7.44 -2.39 -0.02 1.89 16 36 H 0.03 0.76 8.06 -2.39 -0.02 0.74 16 37 H 0.38 5.73 7.40 -74.06 -0.55 5.18 16 38 H 0.16 1.55 6.62 -2.91 -0.02 1.53 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.79 343.32 1.28 -64.51 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.10 Total: 21.73 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.26 Total: -35.48 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.75 Total: -80.16 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.94 Total: -14.62 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.79 1.28 -64.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.561 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds