Wall clock time and date at job start Tue Mar 31 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47928 * 2 1 4 4 C 1.53005 * 109.47253 * 120.00279 * 2 1 3 5 5 C 1.52998 * 109.47511 * 184.99450 * 4 2 1 6 6 C 1.50698 * 109.47340 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00443 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99950 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47198 * 89.99481 * 10 8 6 12 12 H 1.48495 * 109.47022 * 209.99961 * 10 8 6 13 13 H 1.48506 * 109.46974 * 329.99819 * 10 8 6 14 14 N 1.46906 * 109.47138 * 239.99931 * 2 1 3 15 15 C 1.46901 * 110.99663 * 85.00033 * 14 2 1 16 16 C 1.53007 * 109.46888 * 179.97438 * 15 14 2 17 17 H 1.08997 * 109.47115 * 305.00204 * 16 15 14 18 18 O 1.42901 * 109.46769 * 65.00310 * 16 15 14 19 19 C 1.50698 * 109.46975 * 185.00217 * 16 15 14 20 20 C 1.38244 * 119.97167 * 100.00102 * 19 16 15 21 21 C 1.38205 * 120.02298 * 180.02562 * 20 19 16 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 H 1.08990 * 109.47541 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46840 * 300.00361 * 1 2 3 28 28 H 1.08998 * 109.46645 * 59.99288 * 1 2 3 29 29 H 1.09005 * 109.47066 * 305.00093 * 4 2 1 30 30 H 1.09001 * 109.47041 * 64.99410 * 4 2 1 31 31 H 1.09001 * 109.47043 * 300.00176 * 5 4 2 32 32 H 1.09008 * 109.46834 * 60.00277 * 5 4 2 33 33 H 0.96998 * 120.00714 * 179.97438 * 9 8 6 34 34 H 1.00899 * 110.99836 * 208.95965 * 14 2 1 35 35 H 1.09002 * 109.46685 * 60.00683 * 15 14 2 36 36 H 1.08994 * 109.47482 * 300.00422 * 15 14 2 37 37 H 0.96700 * 114.00245 * 59.99881 * 18 16 15 38 38 H 1.07999 * 119.98898 * 0.02589 * 20 19 16 39 39 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 41 41 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6135 1.3137 6 6 4.0671 -1.3234 2.5444 7 1 3.3686 -1.8039 3.2135 8 6 5.4183 -1.3596 2.8162 9 7 6.2689 -0.7750 2.0012 10 14 6.0409 -2.2403 4.3415 11 1 6.3214 -3.6610 4.0129 12 1 7.2868 -1.5866 4.8164 13 1 5.0093 -2.1731 5.4076 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5962 -0.5329 -3.5742 17 1 3.5520 -1.0011 -3.3389 18 8 1.6512 -1.5389 -3.9443 19 6 2.7774 0.4313 -4.7181 20 6 4.0364 0.9155 -5.0205 21 6 4.2037 1.8003 -6.0689 22 6 3.1089 2.2055 -6.8135 23 9 3.2704 3.0746 -7.8351 24 6 1.8491 1.7154 -6.5133 25 6 1.6843 0.8312 -5.4641 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.6054 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2056 31 1 3.9994 -1.0730 0.4259 32 1 3.8533 0.4368 1.3574 33 1 7.2195 -0.8001 2.1926 34 1 2.9172 -1.1206 -1.0287 35 1 2.7589 1.0461 -2.1182 36 1 1.0871 0.6164 -2.5525 37 1 0.7761 -1.1934 -4.1676 38 1 4.8897 0.6023 -4.4371 39 1 5.1874 2.1787 -6.3047 40 1 0.9951 2.0277 -7.0959 41 1 0.7012 0.4520 -5.2272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:06 Heat of formation + Delta-G solvation = -90.730496 kcal Electronic energy + Delta-G solvation = -21399.391615 eV Core-core repulsion = 17999.755642 eV Total energy + Delta-G solvation = -3399.635973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.12222 -39.83361 -37.59849 -36.28352 -33.26710 -32.05903 -31.36547 -30.75346 -29.22285 -26.74550 -25.07737 -23.44546 -22.96597 -21.38728 -21.23150 -19.52473 -18.11582 -17.11170 -16.78333 -16.43020 -15.82514 -15.65345 -15.26273 -14.77897 -14.65033 -14.49213 -14.15035 -13.80042 -13.26730 -13.18300 -12.94045 -12.64034 -12.51781 -12.20737 -12.18262 -11.67850 -11.45461 -11.32815 -11.17955 -11.02787 -10.92936 -10.54205 -10.42122 -9.97333 -9.77673 -9.38071 -9.29561 -9.05679 -8.80112 -8.37768 -7.99660 -6.02899 -4.04735 0.84379 0.96076 3.27923 3.31000 3.37256 3.40667 3.99042 4.20372 4.40742 4.44444 4.45965 4.60596 4.88474 4.96482 4.96992 5.16627 5.23827 5.33370 5.50206 5.60323 5.66809 5.70776 5.80385 5.83719 5.85710 5.90178 5.96872 6.15175 6.29887 6.33258 6.49437 6.51554 6.60613 6.88970 7.06032 7.43848 7.57645 7.62411 7.76964 7.87617 7.96944 8.40366 9.01814 9.59655 11.08355 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.003268 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.255968 B = 8565.421477 C = 9439.638777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.678 5.678 15 C 0.034 3.966 16 C 0.151 3.849 17 H 0.111 0.889 18 O -0.539 6.539 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.150 4.150 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.152 4.152 25 C -0.083 4.083 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.353 0.647 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.368 0.632 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.075 5.334 -16.654 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.312 5.312 15 C -0.096 4.096 16 C 0.091 3.909 17 H 0.128 0.872 18 O -0.343 6.343 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.169 4.169 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.101 4.101 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.175 0.825 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.215 0.785 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.985 4.757 -16.753 19.597 hybrid contribution 0.891 0.806 0.717 1.399 sum -8.094 5.563 -16.036 18.805 Atomic orbital electron populations 1.21780 0.95769 1.01745 1.00025 1.21619 0.94531 0.95993 0.90615 0.94587 1.21829 0.99647 0.99528 0.94236 1.19126 0.88796 0.96793 0.96929 1.21236 0.91958 1.34203 1.08302 0.92661 1.25018 0.97084 0.95591 0.96737 1.69948 1.02357 1.44160 1.37117 0.86597 0.78284 0.79799 0.83354 1.20618 1.21277 1.19899 1.60537 1.34903 1.31888 1.03912 1.22628 1.00640 0.94588 0.91767 1.20843 0.94093 0.86950 0.89028 0.87165 1.86683 1.23697 1.34238 1.89730 1.20737 0.93698 0.99203 0.98465 1.20984 0.97314 0.95459 0.95867 1.21177 0.98525 1.00189 0.97033 1.17752 0.94717 0.92272 0.87882 1.91496 1.96409 1.67133 1.57037 1.21093 0.96103 0.99981 0.99893 1.20751 0.98862 0.96174 0.94326 0.92262 0.93068 0.94001 0.92744 0.92363 0.96671 0.97024 0.93040 0.82487 0.94377 0.91131 0.78469 0.84446 0.84556 0.84715 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.41 37.16 0.35 -1.56 16 2 C 0.08 1.37 2.65 -67.71 -0.18 1.20 16 3 H 0.04 0.63 7.80 -51.93 -0.40 0.23 16 4 C -0.11 -2.32 4.74 -26.73 -0.13 -2.44 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 7 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 N -0.68 -10.82 6.26 -106.72 -0.67 -11.49 16 15 C 0.03 0.44 5.10 -3.82 -0.02 0.42 16 16 C 0.15 1.78 3.38 -27.88 -0.09 1.68 16 17 H 0.11 1.41 8.00 -51.93 -0.42 0.99 16 18 O -0.54 -6.57 13.14 -35.23 -0.46 -7.03 16 19 C -0.12 -1.26 4.97 -104.62 -0.52 -1.78 16 20 C -0.08 -0.81 9.67 -39.59 -0.38 -1.19 16 21 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 22 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 24 C -0.15 -1.39 10.03 -39.51 -0.40 -1.79 16 25 C -0.08 -0.75 9.32 -39.59 -0.37 -1.12 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 32 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.35 6.37 6.47 -39.29 -0.25 6.12 16 35 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 36 H 0.07 0.83 7.44 -51.93 -0.39 0.44 16 37 H 0.37 3.17 7.50 45.56 0.34 3.51 16 38 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.87 6.78 -52.49 -0.36 0.51 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -30.70 343.62 -8.70 -39.40 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.54 Total: 5.41 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.97 Total: -20.74 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.07 Total: -37.23 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.46 Total: -7.03 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.70 -8.70 -39.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.330 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds