Wall clock time and date at job start Tue Mar 31 2020 05:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47014 * 174.82108 * 3 2 1 5 5 H 1.08997 * 109.47307 * 305.34367 * 4 3 2 6 6 N 1.46904 * 109.47052 * 65.34551 * 4 3 2 7 7 C 1.46897 * 110.99815 * 208.09629 * 6 4 3 8 8 H 1.09002 * 109.47495 * 32.41428 * 7 6 4 9 9 C 1.53002 * 109.47597 * 272.40872 * 7 6 4 10 10 C 1.53008 * 109.46854 * 152.40859 * 7 6 4 11 11 C 1.52995 * 109.47089 * 294.99782 * 10 7 6 12 12 C 1.50699 * 109.47105 * 179.97438 * 11 10 7 13 13 H 1.08007 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00347 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00342 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99823 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47233 * 90.00014 * 16 14 12 18 18 H 1.48503 * 109.47128 * 210.00347 * 16 14 12 19 19 H 1.48503 * 109.47128 * 330.00159 * 16 14 12 20 20 C 1.50697 * 109.46966 * 185.34260 * 4 3 2 21 21 C 1.33385 * 125.20418 * 100.00433 * 20 4 3 22 22 C 1.38424 * 114.92367 * 179.97438 * 21 20 4 23 23 C 1.33389 * 114.92323 * 359.97438 * 22 21 20 24 24 S 1.75883 * 125.20357 * 279.69314 * 20 4 3 25 25 H 1.09006 * 109.46583 * 60.00466 * 1 2 3 26 26 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47179 * 300.00204 * 1 2 3 28 28 H 1.09000 * 109.47179 * 239.99796 * 2 1 3 29 29 H 1.08998 * 109.46880 * 119.99660 * 2 1 3 30 30 H 1.09004 * 109.47231 * 54.82187 * 3 2 1 31 31 H 1.09000 * 109.46897 * 294.82381 * 3 2 1 32 32 H 1.00903 * 111.00074 * 84.14276 * 6 4 3 33 33 H 1.09000 * 109.46999 * 180.02562 * 9 7 6 34 34 H 1.09002 * 109.46699 * 300.00484 * 9 7 6 35 35 H 1.08997 * 109.46545 * 59.99760 * 9 7 6 36 36 H 1.09004 * 109.46964 * 175.00364 * 10 7 6 37 37 H 1.08996 * 109.47081 * 55.00406 * 10 7 6 38 38 H 1.08996 * 109.47669 * 300.00265 * 11 10 7 39 39 H 1.09005 * 109.47182 * 60.00750 * 11 10 7 40 40 H 0.97004 * 120.00757 * 179.97438 * 15 14 12 41 41 H 1.08005 * 122.53634 * 359.97438 * 21 20 4 42 42 H 1.08002 * 122.53529 * 179.97438 * 22 21 20 43 43 H 1.07995 * 125.20312 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1302 5 1 3.8544 0.8759 1.0138 6 7 4.1587 0.8297 -1.0644 7 6 5.4535 0.2114 -0.7494 8 1 5.4365 -0.1669 0.2727 9 6 6.5642 1.2544 -0.8888 10 6 5.7153 -0.9448 -1.7168 11 6 4.6759 -2.0444 -1.4904 12 6 4.9333 -3.1829 -2.4436 13 1 5.7563 -3.1278 -3.1409 14 6 4.1183 -4.2949 -2.4256 15 7 4.3432 -5.2886 -3.2571 16 14 2.6953 -4.3905 -1.2192 17 1 1.4774 -3.8147 -1.8437 18 1 2.4444 -5.8097 -0.8611 19 1 3.0331 -3.6231 0.0065 20 6 4.0555 2.8630 0.2621 21 6 4.3933 3.4564 1.4080 22 6 4.8178 4.7680 1.2827 23 6 4.8254 5.2396 0.0350 24 16 4.2783 3.9871 -1.0721 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6029 1.9824 0.8400 31 1 1.7544 1.9288 -0.9327 32 1 4.2515 1.5035 -1.8097 33 1 7.5249 0.7954 -0.6555 34 1 6.5812 1.6326 -1.9110 35 1 6.3776 2.0780 -0.1997 36 1 6.7133 -1.3465 -1.5413 37 1 5.6443 -0.5834 -2.7426 38 1 4.7468 -2.4059 -0.4646 39 1 3.6779 -1.6428 -1.6660 40 1 3.7701 -6.0711 -3.2443 41 1 4.3396 2.9517 2.3614 42 1 5.1201 5.3642 2.1310 43 1 5.1247 6.2368 -0.2518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:48 Heat of formation + Delta-G solvation = 5.626936 kcal Electronic energy + Delta-G solvation = -20452.284026 eV Core-core repulsion = 17623.039601 eV Total energy + Delta-G solvation = -2829.244425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.87403 -37.08337 -35.01191 -33.09363 -31.86977 -29.92425 -28.80609 -27.12913 -25.25309 -24.30502 -22.12817 -21.18985 -20.88436 -19.84013 -19.13712 -17.39072 -16.56356 -15.75430 -15.48439 -14.75213 -14.46647 -14.16264 -13.81034 -13.33572 -13.11826 -13.07730 -12.76938 -12.65215 -12.51509 -12.48523 -12.23518 -12.00257 -11.51126 -11.39457 -11.37296 -11.09964 -10.87922 -10.80198 -10.65399 -10.39436 -10.31647 -9.80720 -9.59203 -9.45851 -8.99165 -8.72999 -8.59593 -8.40581 -8.11723 -5.92337 -3.88088 0.88002 1.49344 1.88568 2.61870 3.40445 3.46694 3.52306 4.35393 4.55840 4.57100 4.90011 5.12336 5.21496 5.27298 5.33965 5.39647 5.43503 5.46063 5.51376 5.55920 5.64676 5.82752 5.84687 5.94556 6.02988 6.04140 6.06996 6.16941 6.25456 6.29525 6.32080 6.36843 6.47047 6.57620 6.74559 6.76258 7.13398 7.31894 7.55571 7.61358 7.75841 7.96561 8.68434 9.14243 9.71960 11.21656 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.005072 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.577515 B = 5519.117876 C = 6476.734297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.098 4.098 4 C 0.154 3.846 5 H 0.093 0.907 6 N -0.660 5.660 7 C 0.082 3.918 8 H 0.072 0.928 9 C -0.181 4.181 10 C -0.090 4.090 11 C -0.005 4.005 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.064 3.936 15 N -0.910 5.910 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.264 1.264 20 C -0.186 4.186 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.223 4.223 24 S 0.102 5.898 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.336 0.664 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.006 0.994 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 21.098 9.456 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.136 4.136 4 C 0.041 3.959 5 H 0.111 0.889 6 N -0.290 5.290 7 C -0.028 4.028 8 H 0.090 0.910 9 C -0.240 4.240 10 C -0.128 4.128 11 C -0.043 4.043 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.136 4.136 15 N -0.550 5.550 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.189 1.189 20 C -0.306 4.306 21 C -0.177 4.177 22 C -0.162 4.162 23 C -0.359 4.359 24 S 0.365 5.635 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.748 20.250 7.889 21.905 hybrid contribution 0.129 0.864 2.220 2.386 sum -2.619 21.114 10.109 23.555 Atomic orbital electron populations 1.21780 0.96626 1.01437 1.01007 1.21477 0.94690 0.96089 1.03635 1.21586 0.92622 0.97778 1.01612 1.20449 0.95084 0.85266 0.95102 0.88893 1.60750 1.25962 1.35470 1.06816 1.21870 0.85935 0.94573 1.00383 0.90997 1.22589 1.00301 0.99602 1.01529 1.21459 0.99695 0.94229 0.97397 1.19475 0.95415 0.93314 0.96066 1.21271 1.14654 1.00552 1.18899 0.91461 1.25018 0.97507 0.95610 0.95468 1.69928 1.39549 1.07620 1.37900 0.86775 0.83246 0.76664 0.82596 1.20256 1.21916 1.18886 1.25808 1.06851 1.01747 0.96169 1.20113 1.03697 0.95113 0.98727 1.20158 1.02968 0.95860 0.97250 1.25591 1.10251 1.03369 0.96670 1.84305 1.64598 1.03865 1.10765 0.92969 0.92900 0.93457 0.89749 0.92503 0.92180 0.91870 0.84407 0.92330 0.92635 0.93237 0.92891 0.92880 0.97576 0.95395 0.93012 0.84534 0.84653 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.73 5.76 -26.73 -0.15 -1.88 16 3 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 4 C 0.15 1.96 2.43 -68.86 -0.17 1.79 16 5 H 0.09 1.22 7.32 -51.93 -0.38 0.84 16 6 N -0.66 -9.77 5.07 -100.95 -0.51 -10.28 16 7 C 0.08 1.29 2.60 -67.71 -0.18 1.11 16 8 H 0.07 1.15 7.35 -51.93 -0.38 0.77 16 9 C -0.18 -2.45 8.97 37.16 0.33 -2.11 16 10 C -0.09 -1.78 4.83 -26.73 -0.13 -1.90 16 11 C -0.01 -0.13 3.93 -27.89 -0.11 -0.24 16 12 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 13 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.79 13.96 55.43 0.77 -28.01 16 16 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C -0.19 -2.14 3.60 -36.01 -0.13 -2.27 16 21 C -0.15 -1.55 10.04 -41.21 -0.41 -1.96 16 22 C -0.13 -1.26 10.18 -41.21 -0.42 -1.68 16 23 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 24 S 0.10 1.09 21.91 -107.50 -2.36 -1.26 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.45 7.34 -51.93 -0.38 1.07 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.34 4.77 6.91 -39.29 -0.27 4.50 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.05 0.63 6.45 -51.93 -0.33 0.30 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.15 7.20 -51.93 -0.37 -0.23 16 39 H 0.03 0.67 6.61 -51.93 -0.34 0.33 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -30.89 353.70 -10.21 -41.11 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.55 Total: 2.81 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -1.23 Total: -27.37 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.26 Total: -38.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.36 Total: -1.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.89 -10.21 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.734 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds