Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46698 * 2 1 4 4 C 1.53005 * 109.46757 * 184.97207 * 3 2 1 5 5 H 1.09000 * 109.46668 * 54.80779 * 4 3 2 6 6 N 1.46903 * 109.47354 * 294.80415 * 4 3 2 7 7 C 1.46898 * 110.99860 * 153.90459 * 6 4 3 8 8 H 1.09000 * 109.47249 * 37.37119 * 7 6 4 9 9 C 1.53005 * 109.47018 * 277.37653 * 7 6 4 10 10 C 1.52995 * 109.47184 * 157.37550 * 7 6 4 11 11 C 1.52997 * 109.46934 * 294.99819 * 10 7 6 12 12 C 1.50702 * 109.46977 * 179.97438 * 11 10 7 13 13 H 1.08000 * 120.00023 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00122 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99674 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 119.99763 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47255 * 89.99781 * 16 14 12 18 18 H 1.48499 * 109.47337 * 209.99541 * 16 14 12 19 19 H 1.48500 * 109.47505 * 329.99823 * 16 14 12 20 20 C 1.50704 * 109.47148 * 174.80313 * 4 3 2 21 21 C 1.33390 * 125.20507 * 260.00692 * 20 4 3 22 22 C 1.38423 * 114.92187 * 180.02562 * 21 20 4 23 23 C 1.33395 * 114.91885 * 0.02562 * 22 21 20 24 24 S 1.75880 * 109.59419 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46662 * 299.99537 * 1 2 3 26 26 H 1.08997 * 109.47236 * 59.99850 * 1 2 3 27 27 H 1.09006 * 109.46845 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47117 * 240.00463 * 2 1 3 29 29 H 1.08997 * 109.47236 * 120.00150 * 2 1 3 30 30 H 1.09000 * 109.47231 * 64.97864 * 3 2 1 31 31 H 1.09000 * 109.47655 * 304.97449 * 3 2 1 32 32 H 1.00898 * 110.99870 * 277.85555 * 6 4 3 33 33 H 1.08993 * 109.47030 * 175.34315 * 9 7 6 34 34 H 1.08999 * 109.46922 * 295.34488 * 9 7 6 35 35 H 1.09005 * 109.46957 * 55.34445 * 9 7 6 36 36 H 1.08998 * 109.47171 * 55.00176 * 10 7 6 37 37 H 1.08999 * 109.47413 * 174.99972 * 10 7 6 38 38 H 1.08996 * 109.47529 * 299.99392 * 11 10 7 39 39 H 1.09002 * 109.47258 * 60.00555 * 11 10 7 40 40 H 0.96999 * 119.99015 * 180.02562 * 15 14 12 41 41 H 1.07999 * 122.53531 * 359.97438 * 21 20 4 42 42 H 1.07991 * 122.54114 * 179.97438 * 22 21 20 43 43 H 1.08000 * 125.19668 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5649 1.4444 -0.1250 5 1 3.8576 0.8770 -1.0085 6 7 4.1550 0.8279 1.0707 7 6 5.4722 0.2512 0.7700 8 1 5.9985 0.8952 0.0655 9 6 5.2923 -1.1380 0.1546 10 6 6.2851 0.1358 2.0609 11 6 6.5716 1.5348 2.6100 12 6 7.3718 1.4211 3.8819 13 1 7.6487 0.4482 4.2605 14 6 7.7513 2.5590 4.5618 15 7 8.4501 2.4597 5.6715 16 14 7.2730 4.2416 3.9066 17 1 5.9602 4.6394 4.4754 18 1 8.3037 5.2365 4.2976 19 1 7.1746 4.1866 2.4258 20 6 4.0567 2.8631 -0.2534 21 6 4.3983 3.4580 -1.3974 22 6 4.8227 4.7693 -1.2689 23 6 4.8263 5.2391 -0.0204 24 16 4.2691 3.9874 1.0824 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7512 1.9300 0.9312 31 1 1.6057 1.9815 -0.8420 32 1 4.2154 1.4922 1.8276 33 1 6.2637 -1.5315 -0.1444 34 1 4.8405 -1.8049 0.8888 35 1 4.6444 -1.0672 -0.7192 36 1 5.7188 -0.4346 2.7971 37 1 7.2266 -0.3728 1.8532 38 1 7.1380 2.1051 1.8739 39 1 5.6301 2.0434 2.8178 40 1 8.7167 3.2603 6.1499 41 1 4.3483 2.9544 -2.3515 42 1 5.1286 5.3664 -2.1151 43 1 5.1249 6.2359 0.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = 3.791397 kcal Electronic energy + Delta-G solvation = -20610.321166 eV Core-core repulsion = 17780.997146 eV Total energy + Delta-G solvation = -2829.324020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.72822 -37.00434 -35.13441 -33.04127 -31.94354 -29.98058 -28.67690 -27.40157 -25.25215 -24.19096 -22.12812 -21.17252 -20.71731 -19.73183 -19.09851 -17.24536 -16.67680 -15.83652 -15.35158 -14.81064 -14.60304 -14.24214 -13.74557 -13.42682 -13.18319 -12.95234 -12.80332 -12.60564 -12.53771 -12.25392 -12.07050 -11.95284 -11.61833 -11.37563 -11.33235 -11.14111 -10.96026 -10.84227 -10.58692 -10.56166 -10.34857 -9.93117 -9.74687 -9.42477 -9.15942 -8.55825 -8.52030 -8.31482 -8.16842 -6.02714 -3.99921 1.11544 1.75058 2.15127 2.83013 3.30429 3.37566 3.43278 4.40864 4.47022 4.63273 5.07982 5.11227 5.15622 5.23014 5.31125 5.36259 5.45945 5.54561 5.59276 5.63825 5.69804 5.75191 5.85074 5.91013 5.95648 6.07542 6.12000 6.15721 6.24329 6.30940 6.36838 6.42358 6.44038 6.49401 6.56352 6.75822 6.89285 7.28886 7.31748 7.51843 7.67001 7.82190 8.56447 9.03254 9.60568 11.10805 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.006727 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.510862 B = 4161.123645 C = 5251.643574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.101 4.101 4 C 0.155 3.845 5 H 0.091 0.909 6 N -0.673 5.673 7 C 0.078 3.922 8 H 0.039 0.961 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.012 4.012 12 C -0.516 4.516 13 H 0.072 0.928 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.863 3.137 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.256 1.256 20 C -0.202 4.202 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.220 4.220 24 S 0.120 5.880 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.348 0.652 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 0.307 -15.508 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.140 4.140 4 C 0.043 3.957 5 H 0.109 0.891 6 N -0.307 5.307 7 C -0.031 4.031 8 H 0.057 0.943 9 C -0.193 4.193 10 C -0.145 4.145 11 C -0.050 4.050 12 C -0.554 4.554 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.690 3.310 17 H -0.200 1.200 18 H -0.216 1.216 19 H -0.180 1.180 20 C -0.321 4.321 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.356 4.356 24 S 0.385 5.615 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.171 0.829 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.413 -0.261 -13.851 19.283 hybrid contribution 0.781 2.132 -1.782 2.886 sum -12.633 1.870 -15.633 20.186 Atomic orbital electron populations 1.21795 0.96614 1.01200 1.01356 1.21402 0.94574 0.96404 1.02793 1.21606 0.92957 0.97507 1.01907 1.20315 0.94682 0.85542 0.95174 0.89082 1.60821 1.24612 1.38422 1.06864 1.21677 0.88373 0.94983 0.98064 0.94278 1.21793 1.00624 0.96822 1.00091 1.21660 0.98330 1.00149 0.94321 1.19605 0.96029 0.92653 0.96665 1.21137 1.33212 0.94730 1.06336 0.91021 1.24992 0.94648 0.98929 0.94621 1.69916 1.38526 1.29077 1.16820 0.86990 0.78518 0.84671 0.80779 1.19976 1.21600 1.18031 1.25752 1.08037 1.01860 0.96485 1.20034 1.03814 0.95108 0.98446 1.20096 1.03657 0.95954 0.97083 1.25642 1.09776 1.03490 0.96685 1.84681 1.62968 1.03767 1.10133 0.92901 0.93321 0.93045 0.92661 0.90396 0.91793 0.92018 0.82943 0.92922 0.92174 0.93593 0.91864 0.92087 0.96972 0.97101 0.92839 0.84726 0.84681 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.11 -1.22 5.77 -26.73 -0.15 -1.37 16 3 C -0.10 -1.18 4.87 -26.73 -0.13 -1.31 16 4 C 0.16 2.06 2.22 -68.86 -0.15 1.91 16 5 H 0.09 1.14 6.90 -51.93 -0.36 0.78 16 6 N -0.67 -10.44 5.60 -100.95 -0.57 -11.00 16 7 C 0.08 1.28 2.48 -67.71 -0.17 1.11 16 8 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 9 C -0.14 -1.84 9.40 37.16 0.35 -1.49 16 10 C -0.11 -2.12 4.76 -26.74 -0.13 -2.25 16 11 C -0.01 -0.29 3.86 -27.88 -0.11 -0.39 16 12 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 16 Si 0.86 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 20 C -0.20 -2.91 5.16 -36.00 -0.19 -3.09 16 21 C -0.14 -1.89 10.04 -41.21 -0.41 -2.30 16 22 C -0.14 -1.79 10.18 -41.21 -0.42 -2.21 16 23 C -0.22 -3.16 11.23 29.04 0.33 -2.83 16 24 S 0.12 1.95 21.75 -107.50 -2.34 -0.38 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.35 6.09 5.03 -39.29 -0.20 5.90 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.56 7.21 -51.93 -0.37 0.18 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 39 H 0.01 0.25 5.58 -51.93 -0.29 -0.03 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -30.30 353.94 -10.20 -40.49 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.49 Total: 4.40 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -1.24 Total: -28.47 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.21 Total: -38.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.34 Total: -0.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.30 -10.20 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.284 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds