Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 C 1.53004 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47327 * 305.00244 * 4 3 2 6 6 N 1.46907 * 109.46807 * 65.00019 * 4 3 2 7 7 C 1.46902 * 110.99806 * 204.99829 * 6 4 3 8 8 H 1.09004 * 109.47101 * 325.00456 * 7 6 4 9 9 C 1.53001 * 109.46840 * 84.99853 * 7 6 4 10 10 C 1.52997 * 109.47016 * 204.99917 * 7 6 4 11 11 C 1.53001 * 109.47176 * 65.00226 * 10 7 6 12 12 C 1.50693 * 109.47237 * 179.97438 * 11 10 7 13 13 H 1.07998 * 119.99994 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00200 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99868 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00088 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47218 * 90.00349 * 16 14 12 18 18 H 1.48505 * 109.47271 * 210.00135 * 16 14 12 19 19 H 1.48501 * 109.47339 * 330.00063 * 16 14 12 20 20 C 1.50697 * 109.46988 * 184.99835 * 4 3 2 21 21 C 1.33387 * 125.20287 * 100.00382 * 20 4 3 22 22 C 1.38427 * 114.91991 * 179.75128 * 21 20 4 23 23 C 1.33381 * 114.92374 * 0.25034 * 22 21 20 24 24 S 1.75886 * 125.20508 * 280.13836 * 20 4 3 25 25 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 300.00358 * 1 2 3 27 27 H 1.09001 * 109.46731 * 60.00114 * 1 2 3 28 28 H 1.08998 * 109.47445 * 239.99642 * 2 1 3 29 29 H 1.09002 * 109.46914 * 119.99367 * 2 1 3 30 30 H 1.09004 * 109.47693 * 59.99728 * 3 2 1 31 31 H 1.09001 * 109.47289 * 299.99545 * 3 2 1 32 32 H 1.00898 * 110.99790 * 328.95567 * 6 4 3 33 33 H 1.09001 * 109.47265 * 60.00255 * 9 7 6 34 34 H 1.08999 * 109.46889 * 180.02562 * 9 7 6 35 35 H 1.08997 * 109.47359 * 299.99949 * 9 7 6 36 36 H 1.09005 * 109.46877 * 185.00011 * 10 7 6 37 37 H 1.09002 * 109.47347 * 305.00063 * 10 7 6 38 38 H 1.09002 * 109.46689 * 300.00055 * 11 10 7 39 39 H 1.09002 * 109.47116 * 59.99695 * 11 10 7 40 40 H 0.96998 * 119.99890 * 179.97438 * 15 14 12 41 41 H 1.08002 * 122.54190 * 0.02679 * 21 20 4 42 42 H 1.08001 * 122.53885 * 180.22673 * 22 21 20 43 43 H 1.08001 * 125.20464 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 7 4.0602 0.8570 -1.2544 7 6 5.4075 0.2971 -1.0831 8 1 5.9711 0.9141 -0.3832 9 6 5.3018 -1.1278 -0.5361 10 6 6.1251 0.2728 -2.4341 11 6 6.3417 1.7066 -2.9224 12 6 7.0491 1.6827 -4.2528 13 1 7.3170 0.7393 -4.7050 14 6 7.3534 2.8653 -4.8931 15 7 7.0266 4.0141 -4.3426 16 14 8.2296 2.8356 -6.5425 17 1 7.2255 2.7907 -7.6358 18 1 9.0606 4.0583 -6.6837 19 1 9.0994 1.6345 -6.6195 20 6 4.0722 2.8580 0.1244 21 6 4.5065 3.4240 1.2515 22 6 4.9251 4.7370 1.1211 23 6 4.8259 5.2389 -0.1107 24 16 4.1722 4.0174 -1.1944 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.4199 0.1589 -1.6020 33 1 4.7382 -1.7449 -1.2359 34 1 6.3015 -1.5431 -0.4086 35 1 4.7905 -1.1106 0.4264 36 1 7.0895 -0.2232 -2.3244 37 1 5.5178 -0.2698 -3.1585 38 1 5.3773 2.2026 -3.0321 39 1 6.9490 2.2493 -2.1980 40 1 7.2410 4.8460 -4.7929 41 1 4.5339 2.8964 2.1935 42 1 5.3031 5.3116 1.9537 43 1 5.1039 6.2420 -0.3986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = 4.308477 kcal Electronic energy + Delta-G solvation = -20480.958317 eV Core-core repulsion = 17651.656719 eV Total energy + Delta-G solvation = -2829.301598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.53520 -36.71127 -35.05535 -32.96399 -31.72497 -29.58581 -28.33583 -27.10493 -24.95791 -24.06915 -22.03917 -21.37471 -20.56519 -19.71841 -18.75248 -16.56642 -16.05507 -15.68721 -15.17293 -14.85877 -14.40057 -14.30657 -13.73030 -13.22237 -12.91828 -12.80351 -12.49430 -12.33000 -12.26508 -12.12415 -11.94017 -11.79897 -11.40595 -11.25057 -11.12367 -11.04599 -10.83551 -10.73983 -10.62640 -10.41220 -10.09274 -9.93066 -9.53208 -9.15141 -8.84466 -8.17204 -8.10643 -7.92367 -7.63303 -5.81389 -3.81841 1.59986 2.35938 2.79113 3.23254 3.40125 3.46326 3.49541 4.46975 4.58985 4.79783 4.92509 4.98452 5.30693 5.40133 5.47803 5.53539 5.53658 5.57247 5.63888 5.65525 5.70156 5.77648 5.85850 5.97150 6.02748 6.07288 6.12827 6.19855 6.29344 6.31510 6.47025 6.56141 6.74071 6.81164 6.94094 6.98833 7.37892 7.53478 7.84180 7.93012 8.17151 8.33727 8.65275 9.26748 9.79652 11.28593 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.005757 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.298043 B = 4862.308228 C = 5878.738849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.118 4.118 4 C 0.159 3.841 5 H 0.054 0.946 6 N -0.668 5.668 7 C 0.085 3.915 8 H 0.072 0.928 9 C -0.179 4.179 10 C -0.100 4.100 11 C 0.031 3.969 12 C -0.518 4.518 13 H 0.048 0.952 14 C 0.059 3.941 15 N -0.888 5.888 16 Si 0.882 3.118 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.174 4.174 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.241 4.241 24 S 0.218 5.782 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.339 0.661 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.006 0.994 40 H 0.256 0.744 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 -4.416 12.062 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.156 4.156 4 C 0.047 3.953 5 H 0.072 0.928 6 N -0.301 5.301 7 C -0.025 4.025 8 H 0.090 0.910 9 C -0.238 4.238 10 C -0.138 4.138 11 C -0.006 4.006 12 C -0.557 4.557 13 H 0.066 0.934 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.710 3.290 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.294 4.294 21 C -0.191 4.191 22 C -0.180 4.180 23 C -0.378 4.378 24 S 0.485 5.515 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.958 -3.652 10.205 15.412 hybrid contribution 0.977 -0.623 1.134 1.621 sum -9.981 -4.276 11.338 15.699 Atomic orbital electron populations 1.21741 0.95702 1.01397 1.01894 1.21585 0.96077 0.96905 1.01875 1.21827 0.93813 0.96850 1.03149 1.19860 0.93497 0.89509 0.92443 0.92816 1.60561 1.03751 1.38803 1.26948 1.21754 0.89638 0.91858 0.99228 0.91003 1.22532 1.01947 0.99219 1.00138 1.21644 0.97096 1.01943 0.93074 1.19031 0.97663 0.89487 0.94415 1.21345 1.37244 0.91912 1.05170 0.93375 1.24946 0.96172 0.95810 0.97210 1.69988 1.47599 0.96934 1.38250 0.86768 0.79781 0.77223 0.85182 1.20903 1.21470 1.20188 1.24653 1.07623 1.00072 0.97037 1.19864 1.05275 0.95637 0.98367 1.19885 1.05170 0.95699 0.97247 1.25835 1.09862 1.04293 0.97776 1.85030 1.57851 0.99900 1.08691 0.92947 0.92879 0.92513 0.91732 0.92283 0.91296 0.90684 0.83985 0.92819 0.92318 0.93778 0.93714 0.93595 0.94140 0.97586 0.93469 0.85827 0.85688 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.23 5.76 -26.73 -0.15 -1.39 16 3 C -0.12 -1.37 4.79 -26.73 -0.13 -1.50 16 4 C 0.16 2.22 2.29 -68.86 -0.16 2.06 16 5 H 0.05 0.72 7.09 -51.93 -0.37 0.36 16 6 N -0.67 -10.51 5.28 -100.95 -0.53 -11.04 16 7 C 0.08 1.43 2.39 -67.71 -0.16 1.27 16 8 H 0.07 1.34 7.64 -51.93 -0.40 0.95 16 9 C -0.18 -2.43 9.15 37.16 0.34 -2.09 16 10 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 11 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.17 -2.83 5.11 -36.00 -0.18 -3.01 16 21 C -0.16 -2.45 10.04 -41.21 -0.41 -2.86 16 22 C -0.15 -2.31 10.18 -41.21 -0.42 -2.73 16 23 C -0.24 -4.07 11.23 29.04 0.33 -3.75 16 24 S 0.22 4.05 22.41 -107.50 -2.41 1.64 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.34 4.79 6.21 -39.29 -0.24 4.55 16 33 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 1.09 7.07 -51.93 -0.37 0.72 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -30.29 358.56 -10.64 -40.93 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.55 Total: 1.97 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -1.26 Total: -30.07 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.20 Total: -36.93 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.41 Total: 1.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.29 -10.64 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.236 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds