Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 C 1.53004 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47327 * 305.00244 * 4 3 2 6 6 N 1.46907 * 109.46807 * 65.00019 * 4 3 2 7 7 C 1.46902 * 110.99806 * 204.99829 * 6 4 3 8 8 H 1.09004 * 109.47101 * 325.00456 * 7 6 4 9 9 C 1.53001 * 109.46840 * 84.99853 * 7 6 4 10 10 C 1.52997 * 109.47016 * 204.99917 * 7 6 4 11 11 C 1.53001 * 109.47176 * 65.00226 * 10 7 6 12 12 C 1.50693 * 109.47237 * 179.97438 * 11 10 7 13 13 H 1.07998 * 119.99994 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00200 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99868 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00088 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47218 * 90.00349 * 16 14 12 18 18 H 1.48505 * 109.47271 * 210.00135 * 16 14 12 19 19 H 1.48501 * 109.47339 * 330.00063 * 16 14 12 20 20 C 1.50697 * 109.46988 * 184.99835 * 4 3 2 21 21 C 1.33387 * 125.20287 * 100.00382 * 20 4 3 22 22 C 1.38427 * 114.91991 * 179.75128 * 21 20 4 23 23 C 1.33381 * 114.92374 * 0.25034 * 22 21 20 24 24 S 1.75886 * 125.20508 * 280.13836 * 20 4 3 25 25 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 300.00358 * 1 2 3 27 27 H 1.09001 * 109.46731 * 60.00114 * 1 2 3 28 28 H 1.08998 * 109.47445 * 239.99642 * 2 1 3 29 29 H 1.09002 * 109.46914 * 119.99367 * 2 1 3 30 30 H 1.09004 * 109.47693 * 59.99728 * 3 2 1 31 31 H 1.09001 * 109.47289 * 299.99545 * 3 2 1 32 32 H 1.00898 * 110.99790 * 328.95567 * 6 4 3 33 33 H 1.09001 * 109.47265 * 60.00255 * 9 7 6 34 34 H 1.08999 * 109.46889 * 180.02562 * 9 7 6 35 35 H 1.08997 * 109.47359 * 299.99949 * 9 7 6 36 36 H 1.09005 * 109.46877 * 185.00011 * 10 7 6 37 37 H 1.09002 * 109.47347 * 305.00063 * 10 7 6 38 38 H 1.09002 * 109.46689 * 300.00055 * 11 10 7 39 39 H 1.09002 * 109.47116 * 59.99695 * 11 10 7 40 40 H 0.96998 * 119.99890 * 179.97438 * 15 14 12 41 41 H 1.08002 * 122.54190 * 0.02679 * 21 20 4 42 42 H 1.08001 * 122.53885 * 180.22673 * 22 21 20 43 43 H 1.08001 * 125.20464 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 7 4.0602 0.8570 -1.2544 7 6 5.4075 0.2971 -1.0831 8 1 5.9711 0.9141 -0.3832 9 6 5.3018 -1.1278 -0.5361 10 6 6.1251 0.2728 -2.4341 11 6 6.3417 1.7066 -2.9224 12 6 7.0491 1.6827 -4.2528 13 1 7.3170 0.7393 -4.7050 14 6 7.3534 2.8653 -4.8931 15 7 7.0266 4.0141 -4.3426 16 14 8.2296 2.8356 -6.5425 17 1 7.2255 2.7907 -7.6358 18 1 9.0606 4.0583 -6.6837 19 1 9.0994 1.6345 -6.6195 20 6 4.0722 2.8580 0.1244 21 6 4.5065 3.4240 1.2515 22 6 4.9251 4.7370 1.1211 23 6 4.8259 5.2389 -0.1107 24 16 4.1722 4.0174 -1.1944 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.4199 0.1589 -1.6020 33 1 4.7382 -1.7449 -1.2359 34 1 6.3015 -1.5431 -0.4086 35 1 4.7905 -1.1106 0.4264 36 1 7.0895 -0.2232 -2.3244 37 1 5.5178 -0.2698 -3.1585 38 1 5.3773 2.2026 -3.0321 39 1 6.9490 2.2493 -2.1980 40 1 7.2410 4.8460 -4.7929 41 1 4.5339 2.8964 2.1935 42 1 5.3031 5.3116 1.9537 43 1 5.1039 6.2420 -0.3986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -11.565798 kcal Electronic energy + Delta-G solvation = -20481.646677 eV Core-core repulsion = 17651.656719 eV Total energy + Delta-G solvation = -2829.989958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73723 -38.00048 -36.29318 -34.86146 -33.01729 -31.30415 -29.62389 -28.09205 -26.88625 -25.21297 -23.30613 -22.92567 -21.58570 -21.28861 -19.98827 -18.27401 -17.85637 -16.81537 -16.53361 -16.22772 -16.08620 -15.44428 -14.86879 -14.47368 -14.41389 -14.16961 -13.79220 -13.61076 -13.58918 -13.33095 -13.15511 -13.09069 -12.90085 -12.83217 -12.56061 -12.37989 -12.30768 -12.06194 -11.72665 -11.66267 -11.51698 -11.38956 -11.28259 -11.05803 -10.88306 -10.38338 -9.37730 -9.18883 -9.03768 -8.04203 -6.13479 0.31398 1.03069 1.40876 1.41507 1.48752 1.51710 1.99524 2.47397 3.26520 3.29464 3.81629 4.00198 4.12367 4.18485 4.33470 4.34158 4.38095 4.48838 4.52782 4.70928 4.79293 4.81193 4.83064 4.83849 4.96685 5.03665 5.07783 5.13798 5.14238 5.30407 5.31511 5.34729 5.39706 5.48972 5.53268 5.55106 5.67988 5.76068 6.00494 6.19094 6.30993 6.44814 6.69013 7.06014 7.52458 9.04807 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.005757 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.298043 B = 4862.308228 C = 5878.738849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.162 3.838 5 H 0.070 0.930 6 N -0.684 5.684 7 C 0.096 3.904 8 H 0.051 0.949 9 C -0.168 4.168 10 C -0.093 4.093 11 C 0.044 3.956 12 C -0.545 4.545 13 H 0.048 0.952 14 C 0.007 3.993 15 N -0.917 5.917 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.167 4.167 21 C -0.163 4.163 22 C -0.141 4.141 23 C -0.254 4.254 24 S 0.126 5.874 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.349 0.651 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.026 0.974 39 H -0.032 1.032 40 H 0.257 0.743 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 -6.056 13.324 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.051 3.949 5 H 0.088 0.912 6 N -0.318 5.318 7 C -0.014 4.014 8 H 0.069 0.931 9 C -0.227 4.227 10 C -0.131 4.131 11 C 0.007 3.993 12 C -0.583 4.583 13 H 0.066 0.934 14 C -0.191 4.191 15 N -0.557 5.557 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.286 4.286 21 C -0.194 4.194 22 C -0.172 4.172 23 C -0.390 4.390 24 S 0.392 5.608 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.044 0.956 39 H -0.013 1.013 40 H 0.066 0.934 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.355 -5.309 11.474 16.993 hybrid contribution 1.107 -0.061 0.795 1.364 sum -10.248 -5.369 12.269 16.864 Atomic orbital electron populations 1.21727 0.94863 1.02116 1.01892 1.21547 0.96760 0.95314 1.02285 1.21755 0.91962 0.98317 1.02758 1.19957 0.94923 0.88075 0.91985 0.91209 1.60383 1.03495 1.39414 1.28522 1.21453 0.89646 0.94060 0.96231 0.93071 1.22388 1.02663 0.96372 1.01246 1.21499 0.97708 0.98324 0.95535 1.18814 0.95726 0.92147 0.92585 1.21790 1.37861 0.92094 1.06544 0.93378 1.25786 0.96887 0.95444 1.00992 1.70135 1.48314 0.97473 1.39762 0.85692 0.78720 0.77465 0.80567 1.20079 1.21038 1.19313 1.24952 1.07443 1.00504 0.95736 1.20252 1.04232 0.95708 0.99222 1.20297 1.03559 0.96026 0.97362 1.25951 1.10950 1.04295 0.97838 1.85291 1.60203 1.03088 1.12169 0.91861 0.92304 0.93165 0.92012 0.91077 0.90417 0.92370 0.82876 0.91708 0.92094 0.91576 0.93986 0.93429 0.95599 1.01324 0.93427 0.82793 0.82741 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -2.06 5.76 30.59 0.18 -1.89 16 3 C -0.11 -2.39 4.79 30.60 0.15 -2.24 16 4 C 0.16 4.31 2.29 44.17 0.10 4.41 16 5 H 0.07 1.67 7.09 -2.39 -0.02 1.65 16 6 N -0.68 -21.16 5.28 -473.29 -2.50 -23.66 16 7 C 0.10 3.18 2.39 44.91 0.11 3.29 16 8 H 0.05 1.91 7.64 -2.38 -0.02 1.89 16 9 C -0.17 -4.08 9.15 71.98 0.66 -3.42 16 10 C -0.09 -3.90 4.83 30.59 0.15 -3.75 16 11 C 0.04 2.39 4.86 29.85 0.15 2.54 16 12 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 14 C 0.01 0.42 5.46 84.65 0.46 0.88 16 15 N -0.92 -56.56 13.29 21.45 0.28 -56.28 16 16 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.17 -5.37 5.11 24.59 0.13 -5.24 16 21 C -0.16 -4.74 10.04 21.22 0.21 -4.53 16 22 C -0.14 -4.23 10.18 21.22 0.22 -4.01 16 23 C -0.25 -8.79 11.23 66.72 0.75 -8.04 16 24 S 0.13 4.93 22.41 -56.49 -1.27 3.66 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.35 9.45 6.21 -89.70 -0.56 8.90 16 33 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.34 7.43 -2.39 -0.02 1.32 16 36 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 39 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.16 5.12 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -67.08 358.56 3.15 -63.94 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.40 Total: 19.87 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 4.20 Total: -55.37 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.21 Total: -79.93 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.27 Total: 3.66 kcal Total: -67.08 3.15 -63.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.372 kcal (2) G-P(sol) polarization free energy of solvation -67.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds