Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.52997 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47204 * 54.99570 * 4 3 2 6 6 N 1.46897 * 109.47348 * 295.00231 * 4 3 2 7 7 C 1.46899 * 111.00355 * 154.99963 * 6 4 3 8 8 H 1.09002 * 109.47043 * 324.99919 * 7 6 4 9 9 C 1.53002 * 109.47394 * 84.99974 * 7 6 4 10 10 C 1.52997 * 109.47254 * 204.99848 * 7 6 4 11 11 C 1.53004 * 109.47236 * 64.99771 * 10 7 6 12 12 C 1.50703 * 109.47376 * 180.02562 * 11 10 7 13 13 H 1.07998 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00099 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46977 * 120.00444 * 16 14 12 19 19 H 1.48496 * 109.47124 * 240.00145 * 16 14 12 20 20 C 1.50695 * 109.47341 * 174.99681 * 4 3 2 21 21 C 1.33388 * 125.20743 * 259.72311 * 20 4 3 22 22 C 1.38422 * 114.92155 * 179.86185 * 21 20 4 23 23 C 1.33384 * 114.92233 * 0.42627 * 22 21 20 24 24 S 1.75882 * 109.59313 * 359.77146 * 23 22 21 25 25 H 1.09004 * 109.46842 * 300.00116 * 1 2 3 26 26 H 1.08996 * 109.47072 * 60.00000 * 1 2 3 27 27 H 1.08998 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46842 * 239.99884 * 2 1 3 29 29 H 1.09004 * 109.47280 * 120.00229 * 2 1 3 30 30 H 1.08994 * 109.47284 * 60.00011 * 3 2 1 31 31 H 1.08996 * 109.47092 * 299.99988 * 3 2 1 32 32 H 1.00898 * 111.00020 * 31.03795 * 6 4 3 33 33 H 1.09002 * 109.47075 * 59.99404 * 9 7 6 34 34 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00133 * 9 7 6 36 36 H 1.09001 * 109.47630 * 184.99901 * 10 7 6 37 37 H 1.09004 * 109.47346 * 305.00031 * 10 7 6 38 38 H 1.09001 * 109.46917 * 300.00567 * 11 10 7 39 39 H 1.09004 * 109.46741 * 59.99889 * 11 10 7 40 40 H 0.96995 * 119.99701 * 179.97438 * 15 14 12 41 41 H 1.07999 * 122.53976 * 0.02562 * 21 20 4 42 42 H 1.08008 * 122.53935 * 180.19994 * 22 21 20 43 43 H 1.08003 * 125.20579 * 179.79708 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8528 -0.8409 6 7 4.0591 0.8573 1.2561 7 6 5.4065 0.2973 1.0862 8 1 5.5011 -0.1245 0.0855 9 6 6.4462 1.4041 1.2735 10 6 5.6375 -0.8006 2.1264 11 6 4.6794 -1.9638 1.8616 12 6 4.9064 -3.0450 2.8865 13 1 5.6585 -2.9153 3.6506 14 6 4.1532 -4.1992 2.8494 15 7 3.2370 -4.3569 1.9192 16 14 4.4351 -5.5397 4.1194 17 1 5.5145 -5.1213 5.0495 18 1 3.1832 -5.7673 4.8851 19 1 4.8312 -6.7959 3.4337 20 6 4.0724 2.8578 -0.1233 21 6 4.5125 3.4218 -1.2490 22 6 4.9221 4.7378 -1.1207 23 6 4.8230 5.2397 0.1111 24 16 4.1751 4.0164 1.1961 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 3.4186 0.1594 1.6035 33 1 6.3516 1.8259 2.2741 34 1 7.4460 0.9887 1.1469 35 1 6.2817 2.1863 0.5324 36 1 6.6662 -1.1547 2.0588 37 1 5.4559 -0.4002 3.1238 38 1 3.6507 -1.6097 1.9291 39 1 4.8610 -2.3642 0.8641 40 1 2.7074 -5.1691 1.8929 41 1 4.5443 2.8927 -2.1900 42 1 5.2972 5.3134 -1.9541 43 1 5.0980 6.2439 0.3983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = 1.735053 kcal Electronic energy + Delta-G solvation = -20338.198928 eV Core-core repulsion = 17508.785738 eV Total energy + Delta-G solvation = -2829.413190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.69173 -36.95286 -34.99399 -33.07622 -31.71879 -29.44893 -28.94643 -26.99530 -25.09996 -24.19194 -22.08326 -21.50955 -20.47558 -19.64239 -18.99245 -16.91121 -16.42575 -15.55319 -15.38248 -15.02957 -14.52557 -14.31646 -13.89493 -13.08901 -13.03126 -12.76877 -12.57368 -12.51644 -12.40143 -12.11472 -11.91815 -11.80903 -11.41902 -11.19493 -11.17046 -11.02447 -10.90047 -10.66946 -10.52060 -10.45651 -10.36042 -10.15398 -9.76306 -9.27145 -9.02492 -8.44547 -8.37191 -8.26847 -8.05169 -6.01839 -4.03398 1.17011 1.85541 2.29203 2.86007 3.30116 3.38001 3.42363 4.45299 4.46608 4.86001 5.08434 5.14583 5.20941 5.34296 5.36876 5.55601 5.58142 5.65911 5.66801 5.74605 5.79893 5.87517 5.96962 6.01488 6.12557 6.18465 6.24983 6.32279 6.41001 6.41320 6.43831 6.52971 6.56887 6.59763 6.66179 6.93259 7.08809 7.48444 7.61747 7.79310 7.88487 7.98027 8.41852 9.03176 9.60919 11.09222 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.004481 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.397701 B = 6247.581938 C = 7179.917126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.115 4.115 4 C 0.151 3.849 5 H 0.061 0.939 6 N -0.682 5.682 7 C 0.086 3.914 8 H 0.038 0.962 9 C -0.140 4.140 10 C -0.115 4.115 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.137 4.137 21 C -0.162 4.162 22 C -0.133 4.133 23 C -0.245 4.245 24 S 0.146 5.854 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.359 0.641 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 16.699 -5.993 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.153 4.153 4 C 0.039 3.961 5 H 0.079 0.921 6 N -0.319 5.319 7 C -0.024 4.024 8 H 0.056 0.944 9 C -0.198 4.198 10 C -0.153 4.153 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.256 4.256 21 C -0.193 4.193 22 C -0.164 4.164 23 C -0.381 4.381 24 S 0.410 5.590 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.016 17.124 -4.236 17.670 hybrid contribution 0.358 -1.520 -1.474 2.148 sum -0.658 15.605 -5.710 16.630 Atomic orbital electron populations 1.21701 0.95771 1.01796 1.01129 1.21608 0.96091 0.95906 1.03233 1.21804 0.93159 0.97731 1.02613 1.20045 0.94185 0.88811 0.93096 0.92086 1.60615 1.04838 1.40005 1.26463 1.21652 0.88142 0.94043 0.98516 0.94429 1.21917 0.97485 0.98464 1.01900 1.21846 1.00814 0.95281 0.97384 1.19132 0.93798 0.91776 0.96852 1.21274 1.19335 1.01636 1.13389 0.92667 1.25002 0.95208 0.98363 0.95752 1.69960 1.22787 1.27103 1.33545 0.86572 0.78067 0.81943 0.81654 1.19748 1.21034 1.21090 1.24730 1.05151 0.99774 0.95955 1.20035 1.04742 0.95546 0.98941 1.20025 1.03539 0.95517 0.97314 1.25713 1.10647 1.03897 0.97826 1.84430 1.61497 1.01440 1.11659 0.92879 0.93307 0.92473 0.91951 0.90659 0.91074 0.91520 0.81596 0.92355 0.93410 0.93276 0.92750 0.92469 0.96697 0.96991 0.93137 0.85004 0.85165 0.82663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.13 -1.87 5.76 -26.73 -0.15 -2.02 16 3 C -0.11 -1.50 4.79 -26.73 -0.13 -1.63 16 4 C 0.15 2.15 2.47 -68.87 -0.17 1.98 16 5 H 0.06 0.92 7.41 -51.93 -0.38 0.53 16 6 N -0.68 -11.11 5.94 -100.96 -0.60 -11.71 16 7 C 0.09 1.49 2.65 -67.71 -0.18 1.31 16 8 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 9 C -0.14 -2.16 9.01 37.16 0.33 -1.83 16 10 C -0.12 -2.36 4.74 -26.73 -0.13 -2.49 16 11 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 12 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.14 -1.84 3.31 -36.01 -0.12 -1.96 16 21 C -0.16 -2.01 9.98 -41.21 -0.41 -2.42 16 22 C -0.13 -1.50 10.18 -41.21 -0.42 -1.91 16 23 C -0.24 -2.75 11.23 29.04 0.33 -2.42 16 24 S 0.15 1.86 22.63 -107.50 -2.43 -0.57 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.27 6.15 -51.93 -0.32 0.95 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.36 6.43 4.23 -39.29 -0.17 6.27 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.74 5.90 -51.93 -0.31 0.43 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.01 0.38 6.15 -51.93 -0.32 0.06 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 43 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -28.59 353.16 -10.56 -39.15 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.34 Total: 4.49 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -1.22 Total: -27.71 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.14 Total: -37.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.43 Total: -0.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.59 -10.56 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.887 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds