Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.52997 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47204 * 54.99570 * 4 3 2 6 6 N 1.46897 * 109.47348 * 295.00231 * 4 3 2 7 7 C 1.46899 * 111.00355 * 154.99963 * 6 4 3 8 8 H 1.09002 * 109.47043 * 324.99919 * 7 6 4 9 9 C 1.53002 * 109.47394 * 84.99974 * 7 6 4 10 10 C 1.52997 * 109.47254 * 204.99848 * 7 6 4 11 11 C 1.53004 * 109.47236 * 64.99771 * 10 7 6 12 12 C 1.50703 * 109.47376 * 180.02562 * 11 10 7 13 13 H 1.07998 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00099 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46977 * 120.00444 * 16 14 12 19 19 H 1.48496 * 109.47124 * 240.00145 * 16 14 12 20 20 C 1.50695 * 109.47341 * 174.99681 * 4 3 2 21 21 C 1.33388 * 125.20743 * 259.72311 * 20 4 3 22 22 C 1.38422 * 114.92155 * 179.86185 * 21 20 4 23 23 C 1.33384 * 114.92233 * 0.42627 * 22 21 20 24 24 S 1.75882 * 109.59313 * 359.77146 * 23 22 21 25 25 H 1.09004 * 109.46842 * 300.00116 * 1 2 3 26 26 H 1.08996 * 109.47072 * 60.00000 * 1 2 3 27 27 H 1.08998 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46842 * 239.99884 * 2 1 3 29 29 H 1.09004 * 109.47280 * 120.00229 * 2 1 3 30 30 H 1.08994 * 109.47284 * 60.00011 * 3 2 1 31 31 H 1.08996 * 109.47092 * 299.99988 * 3 2 1 32 32 H 1.00898 * 111.00020 * 31.03795 * 6 4 3 33 33 H 1.09002 * 109.47075 * 59.99404 * 9 7 6 34 34 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00133 * 9 7 6 36 36 H 1.09001 * 109.47630 * 184.99901 * 10 7 6 37 37 H 1.09004 * 109.47346 * 305.00031 * 10 7 6 38 38 H 1.09001 * 109.46917 * 300.00567 * 11 10 7 39 39 H 1.09004 * 109.46741 * 59.99889 * 11 10 7 40 40 H 0.96995 * 119.99701 * 179.97438 * 15 14 12 41 41 H 1.07999 * 122.53976 * 0.02562 * 21 20 4 42 42 H 1.08008 * 122.53935 * 180.19994 * 22 21 20 43 43 H 1.08003 * 125.20579 * 179.79708 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8528 -0.8409 6 7 4.0591 0.8573 1.2561 7 6 5.4065 0.2973 1.0862 8 1 5.5011 -0.1245 0.0855 9 6 6.4462 1.4041 1.2735 10 6 5.6375 -0.8006 2.1264 11 6 4.6794 -1.9638 1.8616 12 6 4.9064 -3.0450 2.8865 13 1 5.6585 -2.9153 3.6506 14 6 4.1532 -4.1992 2.8494 15 7 3.2370 -4.3569 1.9192 16 14 4.4351 -5.5397 4.1194 17 1 5.5145 -5.1213 5.0495 18 1 3.1832 -5.7673 4.8851 19 1 4.8312 -6.7959 3.4337 20 6 4.0724 2.8578 -0.1233 21 6 4.5125 3.4218 -1.2490 22 6 4.9221 4.7378 -1.1207 23 6 4.8230 5.2397 0.1111 24 16 4.1751 4.0164 1.1961 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 3.4186 0.1594 1.6035 33 1 6.3516 1.8259 2.2741 34 1 7.4460 0.9887 1.1469 35 1 6.2817 2.1863 0.5324 36 1 6.6662 -1.1547 2.0588 37 1 5.4559 -0.4002 3.1238 38 1 3.6507 -1.6097 1.9291 39 1 4.8610 -2.3642 0.8641 40 1 2.7074 -5.1691 1.8929 41 1 4.5443 2.8927 -2.1900 42 1 5.2972 5.3134 -1.9541 43 1 5.0980 6.2439 0.3983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = -12.377468 kcal Electronic energy + Delta-G solvation = -20338.810893 eV Core-core repulsion = 17508.785738 eV Total energy + Delta-G solvation = -2830.025155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86629 -38.05810 -36.38291 -34.97897 -33.11811 -31.13338 -30.09124 -28.10088 -26.99371 -25.23943 -23.34888 -23.10904 -21.62730 -21.17580 -19.96258 -18.52285 -17.94785 -16.70924 -16.65203 -16.54318 -16.20828 -15.58578 -15.08497 -14.46414 -14.36985 -14.28302 -14.00136 -13.76898 -13.44527 -13.30168 -13.25786 -13.03329 -12.92225 -12.85159 -12.60864 -12.45117 -12.26618 -12.22401 -11.82362 -11.73135 -11.59045 -11.53064 -11.41002 -11.25480 -10.92677 -10.53794 -9.46681 -9.40819 -9.15570 -8.19177 -6.29002 0.23432 0.90938 1.36386 1.38694 1.39827 1.52338 1.95290 2.40993 3.13437 3.21367 3.74789 3.92931 4.06495 4.13317 4.28845 4.33919 4.35134 4.47572 4.48254 4.64886 4.74568 4.76046 4.78976 4.80279 4.87404 4.98701 5.01802 5.02611 5.10224 5.22398 5.24741 5.28828 5.33554 5.42295 5.44944 5.51204 5.54410 5.66651 5.73870 5.85299 6.21228 6.27311 6.44044 6.86677 7.39775 8.91872 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.004481 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.397701 B = 6247.581938 C = 7179.917126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C -0.104 4.104 4 C 0.153 3.847 5 H 0.051 0.949 6 N -0.681 5.681 7 C 0.094 3.906 8 H 0.026 0.974 9 C -0.128 4.128 10 C -0.102 4.102 11 C 0.031 3.969 12 C -0.542 4.542 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.958 3.042 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.139 4.139 23 C -0.234 4.234 24 S 0.120 5.880 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.347 0.653 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.002 0.998 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 18.208 -6.092 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.142 4.142 4 C 0.041 3.959 5 H 0.069 0.931 6 N -0.317 5.317 7 C -0.016 4.016 8 H 0.044 0.956 9 C -0.186 4.186 10 C -0.140 4.140 11 C -0.006 4.006 12 C -0.580 4.580 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.784 3.216 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.275 4.275 21 C -0.189 4.189 22 C -0.170 4.170 23 C -0.369 4.369 24 S 0.384 5.616 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.159 0.841 42 H 0.173 0.827 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.486 18.652 -4.339 19.156 hybrid contribution 0.194 -1.954 -1.498 2.469 sum -0.292 16.698 -5.836 17.691 Atomic orbital electron populations 1.21676 0.94257 1.01625 1.02464 1.21545 0.97443 0.96470 1.01121 1.21715 0.92397 0.96691 1.03357 1.20024 0.94894 0.89424 0.91564 0.93133 1.60690 1.04083 1.39119 1.27767 1.21524 0.89571 0.93851 0.96646 0.95565 1.21802 0.97012 0.97689 1.02091 1.21662 0.99465 0.94660 0.98254 1.18977 0.94252 0.92770 0.94619 1.21692 1.19483 1.02795 1.14034 0.92643 1.25867 0.94845 1.00799 0.97772 1.70082 1.23568 1.27892 1.35164 0.85495 0.78259 0.78789 0.79097 1.18877 1.20383 1.20506 1.24545 1.07028 0.99250 0.96723 1.20296 1.03538 0.96190 0.98906 1.20289 1.03341 0.95140 0.98185 1.26020 1.09370 1.04364 0.97189 1.84510 1.62332 1.02377 1.12430 0.92266 0.91202 0.93417 0.92873 0.93949 0.91131 0.89721 0.83014 0.92370 0.92524 0.92515 0.92689 0.92697 0.97987 0.99847 0.92913 0.84097 0.82652 0.80203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.13 -3.79 5.76 30.59 0.18 -3.62 16 3 C -0.10 -2.69 4.79 30.59 0.15 -2.55 16 4 C 0.15 4.37 2.47 44.17 0.11 4.48 16 5 H 0.05 1.55 7.41 -2.39 -0.02 1.53 16 6 N -0.68 -22.70 5.94 -473.33 -2.81 -25.51 16 7 C 0.09 3.29 2.65 44.92 0.12 3.41 16 8 H 0.03 0.98 7.43 -2.39 -0.02 0.96 16 9 C -0.13 -3.83 9.01 71.98 0.65 -3.18 16 10 C -0.10 -4.28 4.74 30.59 0.15 -4.13 16 11 C 0.03 1.60 4.80 29.85 0.14 1.75 16 12 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.01 0.30 5.46 84.65 0.46 0.77 16 15 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 16 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C -0.16 -4.03 3.31 24.59 0.08 -3.95 16 21 C -0.16 -3.59 9.98 21.22 0.21 -3.37 16 22 C -0.14 -2.71 10.18 21.21 0.22 -2.49 16 23 C -0.23 -4.56 11.23 66.72 0.75 -3.81 16 24 S 0.12 2.89 22.63 -56.49 -1.28 1.61 16 25 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.04 1.53 6.15 -2.38 -0.01 1.52 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.35 13.08 4.23 -89.70 -0.38 12.70 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.62 5.90 -2.39 -0.01 1.60 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.00 0.11 6.15 -2.39 -0.01 0.09 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -61.51 353.16 2.96 -58.55 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.59 Total: 24.44 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 4.15 Total: -50.22 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.53 Total: -80.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.28 Total: 1.61 kcal Total: -61.51 2.96 -58.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.168 kcal (2) G-P(sol) polarization free energy of solvation -61.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds