Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47215 * 239.99778 * 2 1 3 5 5 C 1.52998 * 109.47007 * 175.00320 * 4 2 1 6 6 C 1.50702 * 109.47136 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00132 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00089 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00131 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99843 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46905 * 90.00101 * 10 8 6 12 12 H 1.48497 * 109.47023 * 210.00014 * 10 8 6 13 13 H 1.48503 * 109.47234 * 329.99880 * 10 8 6 14 14 N 1.46904 * 109.46697 * 119.99296 * 2 1 3 15 15 C 1.46897 * 111.00309 * 274.99788 * 14 2 1 16 16 C 1.52999 * 109.47150 * 179.97438 * 15 14 2 17 17 O 1.42905 * 109.46728 * 65.00694 * 16 15 14 18 18 C 1.35950 * 116.99802 * 179.97438 * 17 16 15 19 19 C 1.38661 * 120.06409 * 359.97438 * 18 17 16 20 20 C 1.38183 * 119.97075 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.09518 * 0.02562 * 20 19 18 22 22 C 1.38253 * 120.12384 * 359.97438 * 21 20 19 23 23 C 1.38333 * 120.03162 * 359.70129 * 22 21 20 24 24 F 1.35105 * 120.05184 * 180.27647 * 23 22 21 25 25 H 1.08998 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47599 * 300.00581 * 1 2 3 27 27 H 1.09007 * 109.46872 * 60.00333 * 1 2 3 28 28 H 1.09005 * 109.47016 * 294.99839 * 4 2 1 29 29 H 1.08994 * 109.47323 * 54.99771 * 4 2 1 30 30 H 1.09004 * 109.47361 * 299.99560 * 5 4 2 31 31 H 1.09004 * 109.47326 * 59.99534 * 5 4 2 32 32 H 0.97000 * 120.00292 * 179.97438 * 9 8 6 33 33 H 1.00896 * 110.99994 * 38.95699 * 14 2 1 34 34 H 1.09000 * 109.46866 * 60.00460 * 15 14 2 35 35 H 1.08994 * 109.47299 * 300.00397 * 15 14 2 36 36 H 1.09000 * 109.47486 * 305.00632 * 16 15 14 37 37 H 1.09001 * 109.47362 * 184.99910 * 16 15 14 38 38 H 1.07997 * 120.01567 * 359.95600 * 19 18 17 39 39 H 1.08003 * 119.95366 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.93870 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.98298 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 6 4.0673 -1.3243 -2.5436 7 1 3.3689 -1.8054 -3.2124 8 6 5.4187 -1.3615 -2.8148 9 7 5.8572 -1.9824 -3.8879 10 14 6.6266 -0.5300 -1.6577 11 1 7.0612 -1.4967 -0.6176 12 1 7.8090 -0.0655 -2.4267 13 1 5.9700 0.6333 -1.0089 14 7 2.0196 -0.6924 1.1996 15 6 2.0824 0.2228 2.3469 16 6 2.5949 -0.5329 3.5746 17 8 3.9432 -0.9493 3.3490 18 6 4.5520 -1.6385 4.3503 19 6 3.8663 -1.9077 5.5251 20 6 4.4868 -2.6088 6.5414 21 6 5.7909 -3.0421 6.3889 22 6 6.4783 -2.7759 5.2193 23 6 5.8599 -2.0802 4.1959 24 9 6.5293 -1.8247 3.0505 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.7517 -1.7716 -1.2054 29 1 1.6054 -0.2619 -2.1369 30 1 3.8533 0.4369 -1.3573 31 1 3.9994 -1.0728 -0.4257 32 1 6.8078 -2.0083 -4.0789 33 1 1.4495 -1.4978 1.4102 34 1 1.0870 0.6165 2.5525 35 1 2.7588 1.0463 2.1182 36 1 1.9689 -1.4078 3.7502 37 1 2.5577 0.1213 4.4457 38 1 2.8479 -1.5693 5.6459 39 1 3.9526 -2.8180 7.4564 40 1 6.2736 -3.5895 7.1850 41 1 7.4970 -3.1150 5.1028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = -67.214191 kcal Electronic energy + Delta-G solvation = -21897.486997 eV Core-core repulsion = 18498.870767 eV Total energy + Delta-G solvation = -3398.616230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.62092 -40.07700 -37.90794 -36.98210 -33.42738 -32.07442 -30.83600 -30.17633 -29.43502 -27.56537 -25.21185 -23.61154 -22.55568 -21.60367 -21.03304 -19.78471 -18.58428 -17.14993 -16.65315 -16.46179 -16.34141 -15.47184 -15.28565 -14.85168 -14.61066 -14.46264 -14.11037 -13.87017 -13.55235 -12.92319 -12.84138 -12.59583 -12.44356 -12.35937 -12.19781 -11.98992 -11.75847 -11.40354 -11.32073 -11.09179 -10.99999 -10.68257 -10.36860 -9.74639 -9.52793 -9.40224 -9.09598 -8.92305 -8.32842 -8.25513 -8.01192 -5.85570 -3.81256 0.97768 1.13704 3.02306 3.43862 3.51822 3.58630 3.66213 4.19632 4.26741 4.53218 4.64530 4.66990 4.83948 4.94519 5.00661 5.06962 5.16042 5.23131 5.28672 5.44669 5.48834 5.51136 5.58530 5.78551 5.84007 5.90448 6.00105 6.02034 6.19353 6.19689 6.29652 6.53720 6.57776 6.77381 7.16850 7.26174 7.36044 7.62883 7.67720 7.84672 8.04227 8.74495 9.20394 9.79672 11.28179 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012960 B = 0.005504 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.947604 B = 5086.123332 C = 6910.873163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.072 0.928 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.911 5.911 10 Si 0.880 3.120 11 H -0.274 1.274 12 H -0.293 1.293 13 H -0.266 1.266 14 N -0.669 5.669 15 C 0.059 3.941 16 C 0.063 3.937 17 O -0.282 6.282 18 C 0.104 3.896 19 C -0.189 4.189 20 C -0.093 4.093 21 C -0.136 4.136 22 C -0.118 4.118 23 C 0.071 3.929 24 F -0.125 7.125 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.006 0.994 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.336 0.664 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 1.750 23.914 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.045 4.045 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.135 4.135 9 N -0.551 5.551 10 Si 0.707 3.293 11 H -0.200 1.200 12 H -0.219 1.219 13 H -0.190 1.190 14 N -0.300 5.300 15 C -0.070 4.070 16 C -0.012 4.012 17 O -0.195 6.195 18 C 0.057 3.943 19 C -0.208 4.208 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.137 4.137 23 C 0.051 3.949 24 F -0.104 7.104 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.426 1.874 23.406 24.344 hybrid contribution -0.300 0.472 0.678 0.879 sum -6.726 2.346 24.084 25.115 Atomic orbital electron populations 1.22528 0.98303 1.01717 1.01363 1.21792 0.91181 0.98354 0.91525 0.90928 1.21441 0.99117 0.98948 0.93191 1.19477 0.91371 0.96157 0.97454 1.21257 0.92791 1.33832 1.07522 0.91484 1.24999 0.98436 0.95008 0.95034 1.69932 1.14347 1.44174 1.26669 0.86769 0.80462 0.80934 0.81091 1.19983 1.21939 1.19043 1.60483 1.57958 1.08749 1.02782 1.22013 0.99004 0.96138 0.89888 1.22942 0.81244 0.98542 0.98521 1.86385 1.27720 1.67889 1.37468 1.19159 0.91659 0.94490 0.89034 1.21146 1.01091 1.04953 0.93607 1.20968 0.94893 0.96904 0.98411 1.20876 0.94906 1.02222 0.97452 1.21061 1.01089 0.98882 0.92666 1.17132 0.89142 1.03722 0.84949 1.91591 1.79443 1.92338 1.46998 0.92615 0.93778 0.92019 0.92930 0.92908 0.97606 0.95179 0.93049 0.84569 0.93420 0.89790 0.91973 0.91736 0.84764 0.85345 0.85087 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.16 37.16 0.34 -1.90 16 2 C 0.08 1.29 2.59 -67.71 -0.18 1.11 16 3 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.96 16 5 C -0.01 -0.18 3.93 -27.88 -0.11 -0.29 16 6 C -0.52 -15.72 9.66 -34.44 -0.33 -16.06 16 7 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.91 -29.79 13.96 55.43 0.77 -29.01 16 10 Si 0.88 24.05 27.47 -169.99 -4.67 19.38 16 11 H -0.27 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 13 H -0.27 -7.08 6.54 56.52 0.37 -6.71 16 14 N -0.67 -10.23 5.65 -106.73 -0.60 -10.83 16 15 C 0.06 0.72 5.87 -3.83 -0.02 0.70 16 16 C 0.06 0.70 5.02 37.16 0.19 0.89 16 17 O -0.28 -4.45 9.95 -19.58 -0.19 -4.65 16 18 C 0.10 1.47 6.69 -39.18 -0.26 1.21 16 19 C -0.19 -1.97 9.04 -39.45 -0.36 -2.32 16 20 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 21 C -0.14 -1.24 10.04 -39.57 -0.40 -1.64 16 22 C -0.12 -1.36 10.02 -39.54 -0.40 -1.75 16 23 C 0.07 1.07 7.31 -39.30 -0.29 0.78 16 24 F -0.13 -2.37 17.11 2.25 0.04 -2.33 16 25 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.04 0.47 7.45 -51.93 -0.39 0.08 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.01 0.15 7.20 -51.93 -0.37 -0.23 16 31 H 0.03 0.81 7.18 -51.93 -0.37 0.44 16 32 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 33 H 0.34 4.59 8.47 -39.29 -0.33 4.26 16 34 H 0.05 0.46 7.44 -51.93 -0.39 0.07 16 35 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 36 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -35.66 342.81 -8.27 -43.93 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.35 Total: -1.14 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.44 Total: -20.51 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.17 Total: -39.85 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.67 Total: 19.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.66 -8.27 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.282 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds