Wall clock time and date at job start Tue Mar 31 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00311 * 2 1 4 4 C 1.38771 * 120.03797 * 359.97438 * 3 2 1 5 5 C 1.38137 * 119.99029 * 179.97438 * 4 3 2 6 6 C 1.38242 * 120.08524 * 0.02562 * 5 4 3 7 7 C 1.38476 * 120.08326 * 359.96186 * 6 5 4 8 8 F 1.35104 * 119.99949 * 180.02562 * 7 6 5 9 9 C 1.38390 * 120.00516 * 0.29275 * 7 6 5 10 10 C 1.50695 * 120.04093 * 179.72917 * 9 7 6 11 11 N 1.46903 * 109.47434 * 89.99664 * 10 9 7 12 12 C 1.46902 * 110.99764 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47094 * 35.00403 * 12 11 10 14 14 C 1.53002 * 109.47256 * 275.00180 * 12 11 10 15 15 C 1.53005 * 109.46496 * 155.00356 * 12 11 10 16 16 C 1.52997 * 109.47169 * 294.99689 * 15 12 11 17 17 C 1.50697 * 109.47178 * 180.02562 * 16 15 12 18 18 H 1.08007 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00289 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99489 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00298 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47236 * 89.99990 * 21 19 17 23 23 H 1.48503 * 109.46860 * 210.00115 * 21 19 17 24 24 H 1.48501 * 109.47085 * 329.99950 * 21 19 17 25 25 H 1.09003 * 109.47191 * 299.99945 * 1 2 3 26 26 H 1.08997 * 109.47002 * 60.00336 * 1 2 3 27 27 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00682 * 359.96584 * 4 3 2 29 29 H 1.08001 * 119.95818 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.96488 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.46816 * 210.00273 * 10 9 7 32 32 H 1.08999 * 109.46917 * 329.99582 * 10 9 7 33 33 H 1.00899 * 110.99559 * 56.04729 * 11 10 9 34 34 H 1.09000 * 109.47252 * 300.00127 * 14 12 11 35 35 H 1.08992 * 109.46956 * 60.00290 * 14 12 11 36 36 H 1.09002 * 109.47183 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47371 * 55.00621 * 15 12 11 38 38 H 1.09005 * 109.46423 * 175.00001 * 15 12 11 39 39 H 1.09001 * 109.47312 * 300.00384 * 16 15 12 40 40 H 1.08996 * 109.46929 * 60.00209 * 16 15 12 41 41 H 0.97005 * 119.99444 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3751 -0.0005 5 6 1.9193 3.6054 0.0000 6 6 3.2998 3.6786 0.0005 7 6 4.0563 2.5188 0.0013 8 9 5.4054 2.5923 0.0024 9 6 3.4307 1.2844 -0.0045 10 6 4.2533 0.0217 -0.0098 11 7 4.5200 -0.3948 1.3734 12 6 5.3211 -1.6257 1.4073 13 1 6.0257 -1.6237 0.5757 14 6 4.3967 -2.8392 1.2895 15 6 6.0907 -1.6971 2.7278 16 6 7.1043 -0.5527 2.7898 17 6 7.8627 -0.6233 4.0901 18 1 7.6433 -1.4059 4.8014 19 6 8.8358 0.3118 4.3723 20 7 9.1025 1.2650 3.5064 21 14 9.7754 0.2247 5.9845 22 1 10.9861 -0.6168 5.8070 23 1 10.1796 1.5930 6.3963 24 1 8.9075 -0.3714 7.0317 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2125 2.3195 -0.0015 29 1 1.3312 4.5113 0.0000 30 1 3.7889 4.6414 0.0005 31 1 3.7061 -0.7661 -0.5275 32 1 5.1975 0.2054 -0.5225 33 1 3.6601 -0.5090 1.8888 34 1 3.6920 -2.8413 2.1211 35 1 3.8485 -2.7884 0.3489 36 1 4.9910 -3.7526 1.3151 37 1 5.3926 -1.6098 3.5604 38 1 6.6149 -2.6506 2.7917 39 1 7.8023 -0.6401 1.9572 40 1 6.5800 0.4008 2.7259 41 1 9.7875 1.9227 3.7048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:25 Heat of formation + Delta-G solvation = -70.817153 kcal Electronic energy + Delta-G solvation = -22171.566015 eV Core-core repulsion = 18772.793549 eV Total energy + Delta-G solvation = -3398.772466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.59624 -40.30567 -37.47361 -36.91101 -33.51139 -32.34820 -30.07293 -29.88737 -28.65192 -27.51005 -25.27709 -24.54704 -22.27440 -21.52758 -21.13911 -19.69400 -18.38496 -17.04089 -16.10821 -16.07006 -15.88070 -15.85280 -15.29514 -14.85287 -14.67993 -14.51783 -14.22314 -13.70060 -13.08361 -12.76643 -12.70220 -12.46277 -12.44711 -12.22955 -12.10099 -11.84095 -11.40981 -11.35117 -11.16395 -11.08351 -10.86678 -10.70369 -10.37305 -10.10168 -9.53609 -9.10573 -8.80905 -8.70256 -8.35474 -8.13941 -7.73507 -5.79012 -3.80188 1.11646 1.23734 2.99538 3.42617 3.48320 3.51156 3.52038 4.42870 4.58714 4.61351 4.70719 4.80277 4.90510 4.90980 4.97197 5.18154 5.26653 5.31664 5.47464 5.55834 5.63232 5.68245 5.80298 5.84024 6.01280 6.06727 6.17931 6.23913 6.30778 6.37892 6.52700 6.71503 6.77166 6.99315 7.17254 7.41731 7.60449 7.93017 7.94902 8.19088 8.35652 8.67412 9.29246 9.81711 11.31879 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.004478 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.529322 B = 6251.079804 C = 7257.230071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.158 3.842 4 C -0.226 4.226 5 C -0.055 4.055 6 C -0.195 4.195 7 C 0.166 3.834 8 F -0.117 7.117 9 C -0.147 4.147 10 C 0.109 3.891 11 N -0.663 5.663 12 C 0.084 3.916 13 H 0.071 0.929 14 C -0.178 4.178 15 C -0.097 4.097 16 C 0.029 3.971 17 C -0.517 4.517 18 H 0.050 0.950 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.335 0.665 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.007 0.993 40 H 0.033 0.967 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.846 0.800 -10.675 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.245 4.245 5 C -0.073 4.073 6 C -0.214 4.214 7 C 0.146 3.854 8 F -0.095 7.095 9 C -0.149 4.149 10 C -0.020 4.020 11 N -0.293 5.293 12 C -0.025 4.025 13 H 0.090 0.910 14 C -0.237 4.237 15 C -0.135 4.135 16 C -0.008 4.008 17 C -0.556 4.556 18 H 0.068 0.932 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.201 1.201 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.040 1.160 -10.629 21.837 hybrid contribution -0.138 -0.418 0.676 0.807 sum -19.179 0.742 -9.953 21.620 Atomic orbital electron populations 1.23074 0.78275 1.03989 1.01383 1.86086 1.21339 1.26525 1.88364 1.18492 0.90913 0.84421 0.95030 1.21175 1.00080 0.92145 1.11095 1.20695 0.93492 0.97247 0.95860 1.21084 0.94407 0.97795 1.08111 1.17221 0.77638 0.92861 0.97721 1.91612 1.28091 1.96920 1.92875 1.19150 0.91138 0.95437 1.09215 1.20596 0.97889 0.91696 0.91818 1.60605 1.23049 1.34446 1.11179 1.21742 0.94293 0.85817 1.00655 0.91038 1.22518 1.00358 1.00161 1.00712 1.21621 0.98007 1.00433 0.93456 1.18991 0.92361 0.93770 0.95639 1.21356 1.18837 1.11757 1.03649 0.93189 1.25000 0.97310 0.95626 0.96494 1.69999 1.32534 1.15616 1.35131 0.86704 0.80273 0.77061 0.84572 1.20894 1.21375 1.20060 0.92457 0.92656 0.88227 0.85160 0.85018 0.84589 0.94107 0.90095 0.84679 0.92890 0.93637 0.92394 0.93585 0.93575 0.97508 0.94854 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.58 9.55 -19.40 -0.19 -3.77 16 3 C 0.16 2.00 6.66 -39.23 -0.26 1.74 16 4 C -0.23 -2.36 9.04 -39.42 -0.36 -2.71 16 5 C -0.05 -0.56 10.04 -39.62 -0.40 -0.96 16 6 C -0.19 -2.47 10.02 -39.49 -0.40 -2.86 16 7 C 0.17 2.61 7.24 -39.44 -0.29 2.33 16 8 F -0.12 -2.20 16.48 2.25 0.04 -2.16 16 9 C -0.15 -2.23 5.41 -104.41 -0.56 -2.79 16 10 C 0.11 1.75 5.21 -4.98 -0.03 1.72 16 11 N -0.66 -11.90 5.69 -107.99 -0.61 -12.51 16 12 C 0.08 1.53 2.59 -67.71 -0.18 1.35 16 13 H 0.07 1.34 7.80 -51.93 -0.41 0.94 16 14 C -0.18 -2.60 9.16 37.16 0.34 -2.26 16 15 C -0.10 -2.13 4.83 -26.73 -0.13 -2.26 16 16 C 0.03 0.81 4.86 -27.89 -0.14 0.68 16 17 C -0.52 -15.52 9.11 -34.44 -0.31 -15.83 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -28.34 13.29 55.43 0.74 -27.60 16 21 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 25 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.04 0.60 6.83 -51.93 -0.35 0.25 16 32 H 0.08 1.39 7.55 -51.93 -0.39 1.00 16 33 H 0.34 5.68 8.46 -39.29 -0.33 5.35 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.03 1.00 7.75 -51.93 -0.40 0.59 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -33.76 343.77 -8.00 -41.75 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.32 Total: 0.52 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.81 Total: -19.07 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.12 Total: -40.11 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.19 Total: -3.77 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.76 -8.00 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.064 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds