Wall clock time and date at job start Tue Mar 31 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33388 * 125.20282 * 2 1 4 4 C 1.38422 * 114.92195 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20458 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47303 * 89.99519 * 6 5 4 8 8 C 1.52998 * 109.47199 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47198 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00329 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47037 * 34.99852 * 10 9 8 12 12 C 1.53007 * 109.47244 * 275.00457 * 10 9 8 13 13 C 1.52996 * 109.47542 * 155.00109 * 10 9 8 14 14 C 1.52997 * 109.46947 * 294.99983 * 13 10 9 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47288 * 59.99994 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46819 * 299.99648 * 19 17 15 23 23 S 1.75879 * 125.20371 * 180.31698 * 2 1 3 24 24 H 1.09007 * 109.46595 * 89.99985 * 1 2 3 25 25 H 1.08994 * 109.46991 * 210.00163 * 1 2 3 26 26 H 1.08998 * 109.47567 * 330.00669 * 1 2 3 27 27 H 1.08008 * 122.54005 * 0.02562 * 3 2 1 28 28 H 1.07998 * 122.54095 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.46839 * 329.99526 * 6 5 4 30 30 H 1.08997 * 109.47069 * 210.00267 * 6 5 4 31 31 H 1.09007 * 109.46650 * 60.00309 * 7 6 5 32 32 H 1.08991 * 109.47270 * 300.00498 * 7 6 5 33 33 H 1.08997 * 109.46987 * 60.00023 * 8 7 6 34 34 H 1.09002 * 109.47016 * 300.00277 * 8 7 6 35 35 H 1.00904 * 111.00040 * 56.04623 * 9 8 7 36 36 H 1.09001 * 109.46609 * 299.99657 * 12 10 9 37 37 H 1.08992 * 109.47067 * 59.99139 * 12 10 9 38 38 H 1.08998 * 109.47395 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47372 * 175.00293 * 13 10 9 40 40 H 1.09004 * 109.47108 * 55.00037 * 13 10 9 41 41 H 1.09001 * 109.46832 * 59.99979 * 14 13 10 42 42 H 1.09000 * 109.47611 * 300.00276 * 14 13 10 43 43 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9770 -0.0029 7 6 5.8647 -1.1569 1.4391 8 6 7.2969 -1.6950 1.4378 9 7 7.7562 -1.8682 2.8222 10 6 9.1311 -2.3841 2.8602 11 1 9.6988 -1.9669 2.0284 12 6 9.1068 -3.9098 2.7466 13 6 9.7908 -1.9814 4.1806 14 6 9.9281 -0.4587 4.2386 15 6 10.5772 -0.0620 5.5395 16 1 10.8636 -0.8202 6.2533 17 6 10.8055 1.2688 5.8184 18 7 10.4563 2.1921 4.9493 19 14 11.6108 1.7604 7.4305 20 1 12.9564 1.1390 7.5215 21 1 11.7440 3.2384 7.4868 22 1 10.7727 1.2949 8.5646 23 16 2.5210 -1.4371 -0.0080 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.8669 2.0895 0.0004 28 1 4.3721 1.6350 -0.0002 29 1 6.0385 -0.2711 -0.5169 30 1 5.4133 -1.9376 -0.5173 31 1 5.2122 -1.8629 1.9530 32 1 5.8374 -0.1964 1.9535 33 1 7.9496 -0.9894 0.9237 34 1 7.3237 -2.6557 0.9235 35 1 7.1303 -2.4681 3.3385 36 1 8.5392 -4.3269 3.5784 37 1 8.6369 -4.1966 1.8060 38 1 10.1270 -4.2926 2.7752 39 1 10.7783 -2.4380 4.2476 40 1 9.1754 -2.3227 5.0131 41 1 8.9406 -0.0021 4.1716 42 1 10.5433 -0.1174 3.4061 43 1 10.6172 3.1283 5.1454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:39 Heat of formation + Delta-G solvation = -4.670631 kcal Electronic energy + Delta-G solvation = -18898.380232 eV Core-core repulsion = 16068.689271 eV Total energy + Delta-G solvation = -2829.690961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.33722 -37.36630 -34.86865 -33.09377 -31.97064 -30.33596 -28.92892 -26.83682 -25.04240 -24.05534 -22.72241 -21.36198 -21.23822 -19.63789 -18.89905 -17.03253 -16.07258 -15.56021 -15.34587 -14.94234 -14.55042 -14.28400 -14.11509 -13.58302 -13.37753 -13.03455 -12.96594 -12.68090 -12.43402 -12.33474 -12.12337 -11.99422 -11.58119 -11.51710 -11.31696 -11.17875 -10.98568 -10.88104 -10.74707 -10.58081 -10.43440 -10.11119 -9.58912 -9.16730 -8.87498 -8.57796 -8.51651 -8.19755 -7.82112 -5.85154 -3.86187 0.87293 1.47892 1.87531 2.64447 3.40667 3.44625 3.47299 4.43384 4.56770 4.65764 4.76940 4.98636 5.01715 5.22203 5.23943 5.34533 5.42756 5.45699 5.49630 5.50107 5.57738 5.61862 5.70289 5.71580 5.75960 5.86922 6.05298 6.11864 6.20397 6.25281 6.32157 6.36639 6.44195 6.49433 6.72412 6.93340 7.35480 7.56768 7.86495 7.88527 8.12063 8.27653 8.61381 9.22768 9.76106 11.25916 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.002914 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.853971 B = 9608.067747 C =10735.306781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.189 4.189 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.164 4.164 6 C -0.048 4.048 7 C -0.112 4.112 8 C 0.062 3.938 9 N -0.672 5.672 10 C 0.084 3.916 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.099 4.099 14 C 0.030 3.970 15 C -0.518 4.518 16 H 0.050 0.950 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 S 0.085 5.915 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.020 0.980 35 H 0.334 0.666 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.006 0.994 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -7.806 -13.303 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.306 4.306 3 C -0.165 4.165 4 C -0.168 4.168 5 C -0.281 4.281 6 C -0.088 4.088 7 C -0.150 4.150 8 C -0.068 4.068 9 N -0.302 5.302 10 C -0.025 4.025 11 H 0.089 0.911 12 C -0.239 4.239 13 C -0.137 4.137 14 C -0.007 4.007 15 C -0.557 4.557 16 H 0.068 0.932 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 S 0.349 5.651 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.151 0.849 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.024 0.976 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.710 -8.497 -13.272 23.706 hybrid contribution 0.618 0.966 0.656 1.321 sum -17.092 -7.531 -12.616 22.539 Atomic orbital electron populations 1.20308 0.88041 1.03061 1.02504 1.24426 0.99789 0.95735 1.10610 1.20083 0.93013 0.99145 1.04296 1.20135 0.96251 0.96151 1.04293 1.24480 0.98509 0.96297 1.08783 1.20153 0.89177 1.01181 0.98281 1.21579 0.95663 1.02925 0.94841 1.21941 0.95493 0.98621 0.90724 1.60477 1.03089 1.54557 1.12082 1.21728 0.89418 0.90809 1.00589 0.91092 1.22538 1.02010 0.98812 1.00569 1.21634 0.97475 1.01038 0.93541 1.18987 0.97596 0.88472 0.95652 1.21323 1.39064 0.91762 1.03534 0.93186 1.24999 0.96057 0.96838 0.96564 1.69974 1.48062 1.00347 1.35122 0.86744 0.79931 0.77209 0.84575 1.20440 1.21408 1.20374 1.84177 0.96998 1.09857 1.74106 0.90971 0.91451 0.90618 0.84534 0.84141 0.89694 0.91110 0.92215 0.90252 0.90965 0.96155 0.84863 0.92832 0.93794 0.92300 0.93588 0.93516 0.94919 0.97553 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.38 36.01 0.37 -0.19 16 2 C -0.19 -1.87 6.51 -36.00 -0.23 -2.11 16 3 C -0.14 -1.40 10.05 -41.21 -0.41 -1.81 16 4 C -0.14 -1.56 10.05 -41.21 -0.41 -1.97 16 5 C -0.16 -1.84 5.76 -36.00 -0.21 -2.05 16 6 C -0.05 -0.51 5.71 -27.89 -0.16 -0.67 16 7 C -0.11 -1.38 5.46 -26.73 -0.15 -1.53 16 8 C 0.06 0.84 5.48 -3.83 -0.02 0.82 16 9 N -0.67 -11.02 5.70 -106.73 -0.61 -11.63 16 10 C 0.08 1.44 2.59 -67.71 -0.18 1.27 16 11 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 12 C -0.18 -2.49 9.16 37.16 0.34 -2.15 16 13 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 S 0.09 0.88 23.31 -107.50 -2.51 -1.62 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.02 0.25 7.44 -51.93 -0.39 -0.14 16 35 H 0.33 5.00 8.47 -39.29 -0.33 4.67 16 36 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.67 365.39 -11.42 -43.08 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.79 Total: 0.34 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.73 Total: -25.93 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.13 Total: -38.69 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.67 -11.42 -43.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.414 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds