Wall clock time and date at job start Tue Mar 31 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33388 * 125.20282 * 2 1 4 4 C 1.38422 * 114.92195 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20458 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47303 * 89.99519 * 6 5 4 8 8 C 1.52998 * 109.47199 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47198 * 180.02562 * 8 7 6 10 10 C 1.46898 * 111.00329 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47037 * 34.99852 * 10 9 8 12 12 C 1.53007 * 109.47244 * 275.00457 * 10 9 8 13 13 C 1.52996 * 109.47542 * 155.00109 * 10 9 8 14 14 C 1.52997 * 109.46947 * 294.99983 * 13 10 9 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47288 * 59.99994 * 19 17 15 21 21 H 1.48503 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46819 * 299.99648 * 19 17 15 23 23 S 1.75879 * 125.20371 * 180.31698 * 2 1 3 24 24 H 1.09007 * 109.46595 * 89.99985 * 1 2 3 25 25 H 1.08994 * 109.46991 * 210.00163 * 1 2 3 26 26 H 1.08998 * 109.47567 * 330.00669 * 1 2 3 27 27 H 1.08008 * 122.54005 * 0.02562 * 3 2 1 28 28 H 1.07998 * 122.54095 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.46839 * 329.99526 * 6 5 4 30 30 H 1.08997 * 109.47069 * 210.00267 * 6 5 4 31 31 H 1.09007 * 109.46650 * 60.00309 * 7 6 5 32 32 H 1.08991 * 109.47270 * 300.00498 * 7 6 5 33 33 H 1.08997 * 109.46987 * 60.00023 * 8 7 6 34 34 H 1.09002 * 109.47016 * 300.00277 * 8 7 6 35 35 H 1.00904 * 111.00040 * 56.04623 * 9 8 7 36 36 H 1.09001 * 109.46609 * 299.99657 * 12 10 9 37 37 H 1.08992 * 109.47067 * 59.99139 * 12 10 9 38 38 H 1.08998 * 109.47395 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47372 * 175.00293 * 13 10 9 40 40 H 1.09004 * 109.47108 * 55.00037 * 13 10 9 41 41 H 1.09001 * 109.46832 * 59.99979 * 14 13 10 42 42 H 1.09000 * 109.47611 * 300.00276 * 14 13 10 43 43 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9770 -0.0029 7 6 5.8647 -1.1569 1.4391 8 6 7.2969 -1.6950 1.4378 9 7 7.7562 -1.8682 2.8222 10 6 9.1311 -2.3841 2.8602 11 1 9.6988 -1.9669 2.0284 12 6 9.1068 -3.9098 2.7466 13 6 9.7908 -1.9814 4.1806 14 6 9.9281 -0.4587 4.2386 15 6 10.5772 -0.0620 5.5395 16 1 10.8636 -0.8202 6.2533 17 6 10.8055 1.2688 5.8184 18 7 10.4563 2.1921 4.9493 19 14 11.6108 1.7604 7.4305 20 1 12.9564 1.1390 7.5215 21 1 11.7440 3.2384 7.4868 22 1 10.7727 1.2949 8.5646 23 16 2.5210 -1.4371 -0.0080 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.8669 2.0895 0.0004 28 1 4.3721 1.6350 -0.0002 29 1 6.0385 -0.2711 -0.5169 30 1 5.4133 -1.9376 -0.5173 31 1 5.2122 -1.8629 1.9530 32 1 5.8374 -0.1964 1.9535 33 1 7.9496 -0.9894 0.9237 34 1 7.3237 -2.6557 0.9235 35 1 7.1303 -2.4681 3.3385 36 1 8.5392 -4.3269 3.5784 37 1 8.6369 -4.1966 1.8060 38 1 10.1270 -4.2926 2.7752 39 1 10.7783 -2.4380 4.2476 40 1 9.1754 -2.3227 5.0131 41 1 8.9406 -0.0021 4.1716 42 1 10.5433 -0.1174 3.4061 43 1 10.6172 3.1283 5.1454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:37 Heat of formation + Delta-G solvation = -21.645152 kcal Electronic energy + Delta-G solvation = -18899.116302 eV Core-core repulsion = 16068.689271 eV Total energy + Delta-G solvation = -2830.427032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.21195 -38.62372 -36.07326 -34.99283 -33.19511 -31.70697 -30.31259 -27.77954 -26.95960 -24.99641 -23.63390 -23.07088 -22.40064 -21.20176 -19.70590 -18.35179 -17.85580 -16.68243 -16.49089 -16.34193 -16.09555 -15.53936 -14.92269 -14.72294 -14.45506 -14.20351 -14.16091 -13.84268 -13.76944 -13.49603 -13.33959 -13.16130 -12.85656 -12.82174 -12.77212 -12.36678 -12.36231 -12.29324 -12.11021 -11.75771 -11.69673 -11.51801 -11.49408 -11.20032 -10.95123 -10.47709 -9.38471 -9.32422 -9.09416 -8.13086 -6.23788 0.06092 0.68959 1.06481 1.39621 1.43372 1.50988 1.81970 2.44090 3.18774 3.28608 3.80777 3.98757 4.04476 4.07931 4.29907 4.33680 4.38798 4.42329 4.51248 4.57649 4.66292 4.73279 4.74977 4.78661 4.82882 4.87105 4.99187 5.03819 5.10410 5.11505 5.19906 5.28400 5.31007 5.35242 5.41751 5.48317 5.59545 5.64576 5.89788 6.03653 6.31220 6.35368 6.67067 6.96049 7.44198 8.98082 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.002914 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.853971 B = 9608.067747 C =10735.306781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.188 4.188 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.182 4.182 6 C -0.041 4.041 7 C -0.101 4.101 8 C 0.067 3.933 9 N -0.696 5.696 10 C 0.090 3.910 11 H 0.059 0.941 12 C -0.168 4.168 13 C -0.090 4.090 14 C 0.039 3.961 15 C -0.544 4.544 16 H 0.055 0.945 17 C -0.003 4.003 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.268 1.268 23 S 0.087 5.913 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.342 0.658 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.003 0.997 42 H -0.025 1.025 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 -9.083 -13.016 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.305 4.305 3 C -0.182 4.182 4 C -0.181 4.181 5 C -0.299 4.299 6 C -0.081 4.081 7 C -0.139 4.139 8 C -0.062 4.062 9 N -0.328 5.328 10 C -0.019 4.019 11 H 0.077 0.923 12 C -0.227 4.227 13 C -0.128 4.128 14 C 0.002 3.998 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.193 1.193 23 S 0.350 5.650 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.158 0.842 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.021 0.979 42 H -0.006 1.006 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.427 -9.794 -12.988 24.579 hybrid contribution 0.794 1.405 0.543 1.702 sum -17.633 -8.390 -12.445 23.155 Atomic orbital electron populations 1.20430 0.85976 1.03971 1.03643 1.24860 1.01229 0.95188 1.09263 1.20294 0.92722 1.00213 1.04963 1.20345 0.96994 0.96371 1.04367 1.24588 0.99055 0.96623 1.09598 1.20084 0.89019 1.02013 0.97009 1.21443 0.95125 1.01411 0.95950 1.21907 0.95603 0.99403 0.89299 1.60363 1.03039 1.55342 1.14035 1.21506 0.89433 0.93439 0.97553 0.92280 1.22383 1.02853 0.95451 1.02002 1.21475 0.98325 0.96790 0.96173 1.18813 0.94905 0.92337 0.93737 1.21797 1.39425 0.92395 1.04585 0.92631 1.25978 0.96561 0.96832 1.00627 1.70125 1.49105 1.00768 1.37386 0.85558 0.79217 0.76973 0.79617 1.19177 1.20862 1.19273 1.84095 0.96710 1.10116 1.74044 0.89627 0.90768 0.89466 0.83032 0.84216 0.89622 0.89590 0.91690 0.93005 0.92510 0.93774 0.83925 0.92000 0.91799 0.91702 0.93199 0.93470 0.97900 1.00623 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.38 71.24 0.74 -0.25 16 2 C -0.19 -3.51 6.51 24.59 0.16 -3.35 16 3 C -0.15 -3.06 10.05 21.22 0.21 -2.85 16 4 C -0.15 -3.41 10.05 21.22 0.21 -3.20 16 5 C -0.18 -4.05 5.76 24.59 0.14 -3.91 16 6 C -0.04 -0.87 5.71 29.85 0.17 -0.70 16 7 C -0.10 -2.51 5.46 30.59 0.17 -2.34 16 8 C 0.07 1.81 5.48 86.30 0.47 2.28 16 9 N -0.70 -22.84 5.70 -491.59 -2.80 -25.64 16 10 C 0.09 3.06 2.59 44.92 0.12 3.18 16 11 H 0.06 2.13 7.80 -2.39 -0.02 2.11 16 12 C -0.17 -4.24 9.16 71.98 0.66 -3.58 16 13 C -0.09 -3.81 4.83 30.59 0.15 -3.67 16 14 C 0.04 2.18 4.86 29.85 0.15 2.32 16 15 C -0.54 -32.46 9.11 25.60 0.23 -32.22 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 18 N -0.93 -59.26 13.29 21.45 0.28 -58.98 16 19 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 S 0.09 1.72 23.31 -56.49 -1.32 0.40 16 24 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 34 H 0.04 1.00 7.44 -2.39 -0.02 0.98 16 35 H 0.34 10.00 8.47 -89.69 -0.76 9.24 16 36 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 37 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 42 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 43 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -69.05 365.39 2.43 -66.62 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.20 Total: 17.64 kcal Atomic # 6 Polarization: -52.03 SS G_CDS: 4.04 Total: -47.98 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.52 Total: -84.62 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -69.05 2.43 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.975 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds