Wall clock time and date at job start Tue Mar 31 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33394 * 125.20000 * 2 1 4 4 C 1.38420 * 114.91627 * 180.02562 * 3 2 1 5 5 C 1.33382 * 114.92515 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.20677 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46735 * 90.00103 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 10 10 C 1.46900 * 111.00559 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46908 * 325.00326 * 10 9 8 12 12 C 1.53000 * 109.47145 * 84.99825 * 10 9 8 13 13 C 1.52998 * 109.47361 * 205.00445 * 10 9 8 14 14 C 1.52999 * 109.47521 * 64.99750 * 13 10 9 15 15 C 1.50703 * 109.47243 * 180.02562 * 14 13 10 16 16 H 1.07999 * 119.99899 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99912 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99611 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99857 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46991 * 89.99947 * 19 17 15 21 21 H 1.48504 * 109.47241 * 209.99668 * 19 17 15 22 22 H 1.48504 * 109.47264 * 329.99953 * 19 17 15 23 23 S 1.75875 * 125.20397 * 180.32557 * 2 1 3 24 24 H 1.08997 * 109.47045 * 89.99497 * 1 2 3 25 25 H 1.09001 * 109.47025 * 209.99928 * 1 2 3 26 26 H 1.09003 * 109.46954 * 329.99482 * 1 2 3 27 27 H 1.07998 * 122.53885 * 0.02562 * 3 2 1 28 28 H 1.08005 * 122.53532 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.46797 * 330.00451 * 6 5 4 30 30 H 1.08992 * 109.47518 * 210.00448 * 6 5 4 31 31 H 1.09002 * 109.47398 * 300.00410 * 7 6 5 32 32 H 1.09001 * 109.47194 * 60.00591 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 35 35 H 1.00899 * 111.00176 * 303.95826 * 9 8 7 36 36 H 1.09002 * 109.47075 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47164 * 300.00459 * 12 10 9 38 38 H 1.08998 * 109.46626 * 60.00555 * 12 10 9 39 39 H 1.08997 * 109.47087 * 185.00204 * 13 10 9 40 40 H 1.09005 * 109.46982 * 304.99646 * 13 10 9 41 41 H 1.08999 * 109.46882 * 300.00020 * 14 13 10 42 42 H 1.08996 * 109.46858 * 59.99867 * 14 13 10 43 43 H 0.97005 * 119.99133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3861 -0.9770 -0.0029 7 6 5.8645 -1.1570 1.4392 8 6 7.2972 -1.6938 1.4379 9 7 7.7564 -1.8672 2.8224 10 6 9.1318 -2.3820 2.8605 11 1 9.2861 -3.0681 2.0276 12 6 10.1160 -1.2158 2.7495 13 6 9.3634 -3.1211 4.1799 14 6 8.4662 -4.3592 4.2353 15 6 8.6940 -5.0869 5.5351 16 1 9.4071 -4.7044 6.2504 17 6 7.9921 -6.2411 5.8112 18 7 7.1235 -6.7066 4.9404 19 14 8.2750 -7.1435 7.4221 20 1 7.3392 -6.6238 8.4515 21 1 8.0364 -8.5959 7.2245 22 1 9.6740 -6.9282 7.8711 23 16 2.5209 -1.4371 -0.0082 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8668 2.0895 0.0004 28 1 4.3720 1.6351 -0.0002 29 1 6.0385 -0.2710 -0.5167 30 1 5.4133 -1.9375 -0.5173 31 1 5.8372 -0.1964 1.9537 32 1 5.2121 -1.8630 1.9530 33 1 7.3249 -2.6543 0.9234 34 1 7.9495 -0.9876 0.9242 35 1 7.6792 -1.0044 3.3398 36 1 11.1365 -1.5978 2.7772 37 1 9.9509 -0.6892 1.8095 38 1 9.9617 -0.5298 3.5823 39 1 10.4078 -3.4259 4.2471 40 1 9.1233 -2.4609 5.0133 41 1 7.4219 -4.0544 4.1681 42 1 8.7063 -5.0194 3.4019 43 1 6.6294 -7.5184 5.1348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:42 Heat of formation + Delta-G solvation = -4.591784 kcal Electronic energy + Delta-G solvation = -18906.748774 eV Core-core repulsion = 16077.061232 eV Total energy + Delta-G solvation = -2829.687542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.33945 -37.36613 -34.86464 -33.09028 -31.96308 -30.33060 -28.92723 -26.83374 -25.04233 -24.05249 -22.73192 -21.36348 -21.23820 -19.63022 -18.90626 -16.99506 -16.07182 -15.67950 -15.21177 -14.96344 -14.55886 -14.27743 -14.09371 -13.54582 -13.40576 -13.03158 -12.96391 -12.64205 -12.54622 -12.33335 -12.05387 -11.88144 -11.69238 -11.49405 -11.32875 -11.17061 -10.99998 -10.82342 -10.73250 -10.57625 -10.41127 -10.10967 -9.58981 -9.16673 -8.86424 -8.54831 -8.51310 -8.19657 -7.82193 -5.84931 -3.85887 0.88752 1.51388 1.92285 2.62265 3.39573 3.45342 3.48668 4.43097 4.57052 4.67264 4.77445 4.97086 5.04534 5.25457 5.27308 5.32258 5.42764 5.43198 5.47936 5.50421 5.55269 5.61856 5.70407 5.71649 5.77498 5.84604 6.04183 6.11959 6.17081 6.25718 6.31764 6.37096 6.44469 6.47809 6.72499 6.93389 7.35632 7.56732 7.86624 7.89002 8.12270 8.27900 8.61685 9.23240 9.76428 11.26149 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.003078 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.101148 B = 9094.309093 C =10477.090651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.190 4.190 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.165 4.165 6 C -0.048 4.048 7 C -0.112 4.112 8 C 0.062 3.938 9 N -0.672 5.672 10 C 0.084 3.916 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.099 4.099 14 C 0.030 3.970 15 C -0.518 4.518 16 H 0.050 0.950 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 S 0.105 5.895 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.021 0.979 35 H 0.334 0.666 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.006 0.994 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 16.676 -13.281 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.307 4.307 3 C -0.170 4.170 4 C -0.174 4.174 5 C -0.282 4.282 6 C -0.088 4.088 7 C -0.150 4.150 8 C -0.068 4.068 9 N -0.302 5.302 10 C -0.026 4.026 11 H 0.089 0.911 12 C -0.239 4.239 13 C -0.137 4.137 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.201 1.201 23 S 0.369 5.631 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.151 0.849 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.121 14.341 -13.252 21.552 hybrid contribution 0.914 1.791 0.654 2.115 sum -8.206 16.132 -12.598 22.052 Atomic orbital electron populations 1.20314 0.88042 1.03116 1.02521 1.24491 0.99930 0.96037 1.10270 1.20024 0.92970 0.99023 1.04960 1.20028 0.96126 0.95897 1.05305 1.24512 0.98821 0.96374 1.08543 1.20151 0.89036 1.01361 0.98281 1.21580 0.96841 1.01757 0.94842 1.21941 0.94189 0.99927 0.90732 1.60490 1.23398 1.34284 1.12018 1.21731 0.85437 0.94793 1.00603 0.91098 1.22537 1.01072 0.99743 1.00564 1.21633 0.99716 0.98788 0.93543 1.18991 0.95772 0.90300 0.95681 1.21357 1.22317 1.08438 1.03516 0.93140 1.25003 0.95445 0.97489 0.96550 1.69984 1.26069 1.22424 1.34966 0.86684 0.78399 0.78969 0.84442 1.20792 1.21370 1.20066 1.84456 0.96494 1.09104 1.73039 0.90953 0.91295 0.90709 0.84740 0.84617 0.90248 0.90569 0.92012 0.90448 0.91027 0.96085 0.84872 0.92303 0.93795 0.92828 0.93588 0.93520 0.94925 0.97541 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.38 36.01 0.37 -0.23 16 2 C -0.19 -1.93 6.51 -36.00 -0.23 -2.17 16 3 C -0.14 -1.39 10.05 -41.21 -0.41 -1.80 16 4 C -0.14 -1.50 10.05 -41.21 -0.41 -1.92 16 5 C -0.17 -1.86 5.76 -36.00 -0.21 -2.07 16 6 C -0.05 -0.52 5.71 -27.88 -0.16 -0.68 16 7 C -0.11 -1.39 5.46 -26.73 -0.15 -1.53 16 8 C 0.06 0.84 5.48 -3.83 -0.02 0.82 16 9 N -0.67 -11.02 5.70 -106.73 -0.61 -11.63 16 10 C 0.08 1.44 2.59 -67.71 -0.18 1.26 16 11 H 0.07 1.27 7.80 -51.92 -0.40 0.86 16 12 C -0.18 -2.48 9.16 37.16 0.34 -2.14 16 13 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 14 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 15 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 19 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 S 0.10 1.20 23.31 -107.50 -2.51 -1.31 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 34 H 0.02 0.26 7.44 -51.93 -0.39 -0.13 16 35 H 0.33 4.98 8.47 -39.29 -0.33 4.64 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 38 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -31.78 365.39 -11.42 -43.20 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.79 Total: -0.02 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -1.73 Total: -26.00 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.13 Total: -38.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.78 -11.42 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.607 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds