Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.53001 * 109.47049 * 240.00227 * 2 1 3 5 5 C 1.53000 * 109.47024 * 175.00218 * 4 2 1 6 6 C 1.50704 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99503 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00464 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00052 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99584 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47327 * 90.00290 * 10 8 6 12 12 H 1.48500 * 109.46998 * 210.00083 * 10 8 6 13 13 H 1.48506 * 109.47275 * 329.99861 * 10 8 6 14 14 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 15 15 C 1.46906 * 110.99789 * 274.99821 * 14 2 1 16 16 C 1.53002 * 109.47053 * 179.97438 * 15 14 2 17 17 O 1.42905 * 109.46911 * 65.00374 * 16 15 14 18 18 C 1.35947 * 116.99876 * 180.02562 * 17 16 15 19 19 C 1.38711 * 120.02916 * 359.71676 * 18 17 16 20 20 C 1.38151 * 119.96566 * 179.79688 * 19 18 17 21 21 C 1.38449 * 120.03060 * 0.48536 * 20 19 18 22 22 F 1.35097 * 119.97125 * 179.72762 * 21 20 19 23 23 C 1.38458 * 120.06504 * 359.74666 * 21 20 19 24 24 C 1.38154 * 120.02238 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 26 26 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 28 28 H 1.09011 * 109.46756 * 294.99444 * 4 2 1 29 29 H 1.08996 * 109.47555 * 54.99730 * 4 2 1 30 30 H 1.08994 * 109.46992 * 299.99284 * 5 4 2 31 31 H 1.09001 * 109.47626 * 60.00076 * 5 4 2 32 32 H 0.96998 * 119.99919 * 179.97438 * 9 8 6 33 33 H 1.00899 * 111.00672 * 151.04765 * 14 2 1 34 34 H 1.08992 * 109.47459 * 299.99826 * 15 14 2 35 35 H 1.09004 * 109.47040 * 59.99976 * 15 14 2 36 36 H 1.09003 * 109.47073 * 184.99730 * 16 15 14 37 37 H 1.09002 * 109.47495 * 305.00162 * 16 15 14 38 38 H 1.07999 * 120.01655 * 0.02562 * 19 18 17 39 39 H 1.07997 * 119.98477 * 180.21539 * 20 19 18 40 40 H 1.07996 * 119.98694 * 180.02562 * 23 21 20 41 41 H 1.08003 * 120.00994 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5439 7 1 3.3687 -1.8045 -3.2130 8 6 5.4184 -1.3605 -2.8157 9 7 5.8567 -1.9804 -3.8894 10 14 6.6263 -0.5278 -1.6593 11 1 7.0621 -1.4939 -0.6192 12 1 7.8080 -0.0626 -2.4290 13 1 5.9691 0.6351 -1.0105 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3468 16 6 2.5951 -0.5332 3.5744 17 8 3.9433 -0.9496 3.3487 18 6 4.5519 -1.6397 4.3495 19 6 3.8668 -1.9050 5.5261 20 6 4.4850 -2.6101 6.5406 21 6 5.7911 -3.0431 6.3873 22 9 6.3963 -3.7278 7.3823 23 6 6.4777 -2.7749 5.2152 24 6 5.8603 -2.0741 4.1973 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4260 32 1 6.8073 -2.0056 -4.0808 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0461 2.1182 35 1 1.0870 0.6163 2.5525 36 1 2.5579 0.1210 4.4456 37 1 1.9691 -1.4081 3.7501 38 1 2.8494 -1.5636 5.6476 39 1 3.9508 -2.8198 7.4554 40 1 7.4963 -3.1137 5.0968 41 1 6.3962 -1.8646 3.2833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = -73.632251 kcal Electronic energy + Delta-G solvation = -21486.552260 eV Core-core repulsion = 18087.657722 eV Total energy + Delta-G solvation = -3398.894538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.97399 -40.26328 -37.86826 -36.90783 -33.46700 -32.17216 -31.42422 -30.01124 -29.32364 -27.73185 -25.30980 -23.70266 -22.68210 -21.56144 -21.04888 -19.66557 -18.57315 -17.52840 -16.90442 -16.65249 -16.27929 -15.66310 -15.44527 -14.95307 -14.85785 -14.42843 -14.18642 -13.83580 -13.52351 -13.27540 -12.91450 -12.80302 -12.53864 -12.39341 -12.27319 -12.08484 -11.76320 -11.51978 -11.25246 -11.05930 -10.95000 -10.82741 -10.47520 -9.95536 -9.76459 -9.45402 -9.40495 -9.17333 -8.53674 -8.26434 -8.18154 -6.03704 -4.01498 0.94430 1.03539 3.02365 3.30639 3.37870 3.38168 3.41417 4.11984 4.30393 4.44799 4.45631 4.55768 4.82135 4.91777 5.07898 5.12354 5.13937 5.27214 5.30442 5.38618 5.58189 5.60559 5.68926 5.74966 5.80300 5.88636 5.98344 6.04326 6.06524 6.21028 6.37220 6.39561 6.51107 6.71635 6.85591 7.20198 7.26176 7.28140 7.48745 7.72127 7.80742 8.54867 9.01686 9.59023 11.09842 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.004506 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.948492 B = 6213.124541 C = 7982.601718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.039 0.961 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.904 5.904 10 Si 0.879 3.121 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.267 1.267 14 N -0.687 5.687 15 C 0.060 3.940 16 C 0.059 3.941 17 O -0.307 6.307 18 C 0.131 3.869 19 C -0.184 4.184 20 C -0.114 4.114 21 C 0.052 3.948 22 F -0.144 7.144 23 C -0.111 4.111 24 C -0.124 4.124 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.357 0.643 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 2.835 21.108 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.543 5.543 10 Si 0.706 3.294 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.192 1.192 14 N -0.323 5.323 15 C -0.070 4.070 16 C -0.016 4.016 17 O -0.220 6.220 18 C 0.085 3.915 19 C -0.202 4.202 20 C -0.132 4.132 21 C 0.032 3.968 22 F -0.123 7.123 23 C -0.130 4.130 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.179 0.821 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.922 2.581 21.010 21.981 hybrid contribution 1.480 0.777 0.636 1.789 sum -4.441 3.359 21.646 22.351 Atomic orbital electron populations 1.21784 0.95408 1.01922 1.00295 1.21664 0.94843 0.96079 0.90491 0.94335 1.21661 0.98124 1.00086 0.94531 1.19608 0.91899 0.96511 0.97222 1.21127 0.92927 1.34203 1.07393 0.91011 1.25028 0.98408 0.94916 0.95070 1.69914 1.14580 1.43479 1.26286 0.86794 0.80825 0.80535 0.81228 1.20146 1.21461 1.19209 1.60653 1.35112 1.32038 1.04463 1.22020 1.00239 0.94288 0.90456 1.23017 0.80581 0.99353 0.98674 1.86153 1.28447 1.68402 1.39017 1.19043 0.92466 0.92512 0.87454 1.21119 1.01306 1.04166 0.93644 1.20896 0.93405 0.98829 1.00112 1.17564 0.92439 0.99714 0.87045 1.91478 1.83359 1.77664 1.59797 1.20978 1.00902 0.99239 0.91872 1.20416 0.92896 1.00472 1.00462 0.92800 0.92190 0.93803 0.91858 0.92053 0.97026 0.97124 0.92774 0.82084 0.94253 0.89290 0.91733 0.90793 0.84468 0.84643 0.84073 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.41 37.16 0.35 -1.45 16 2 C 0.08 1.25 2.65 -67.72 -0.18 1.07 16 3 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.08 4.74 -26.73 -0.13 -2.21 16 5 C -0.01 -0.35 3.87 -27.88 -0.11 -0.46 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 7 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 10 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 N -0.69 -10.47 6.31 -106.73 -0.67 -11.14 16 15 C 0.06 0.72 5.90 -3.82 -0.02 0.70 16 16 C 0.06 0.63 5.08 37.16 0.19 0.82 16 17 O -0.31 -4.18 9.66 -19.57 -0.19 -4.36 16 18 C 0.13 1.63 6.69 -39.24 -0.26 1.37 16 19 C -0.18 -1.88 9.04 -39.44 -0.36 -2.24 16 20 C -0.11 -1.13 10.02 -39.54 -0.40 -1.53 16 21 C 0.05 0.58 7.30 -39.42 -0.29 0.29 16 22 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 23 C -0.11 -1.23 10.02 -39.53 -0.40 -1.62 16 24 C -0.12 -1.52 9.98 -39.44 -0.39 -1.92 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.04 0.50 7.45 -51.93 -0.39 0.12 16 28 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 31 H 0.01 0.25 5.86 -51.93 -0.30 -0.05 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.36 6.26 6.03 -39.29 -0.24 6.02 16 34 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 35 H 0.09 0.89 7.44 -51.93 -0.39 0.51 16 36 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 37 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 38 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -31.30 339.73 -8.20 -39.50 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.18 Total: 3.08 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.42 Total: -20.51 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.10 Total: -38.44 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.30 -8.20 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.131 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds