Wall clock time and date at job start Tue Mar 31 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 O 1.42901 * 109.47457 * 64.99631 * 16 15 14 18 18 C 1.35945 * 116.99890 * 180.02562 * 17 16 15 19 19 C 1.38703 * 120.03520 * 359.72083 * 18 17 16 20 20 C 1.38150 * 119.97228 * 179.79556 * 19 18 17 21 21 C 1.38448 * 120.02933 * 0.48346 * 20 19 18 22 22 F 1.35099 * 119.97203 * 179.72518 * 21 20 19 23 23 C 1.38457 * 120.06022 * 359.74952 * 21 20 19 24 24 C 1.38146 * 120.02879 * 0.02562 * 23 21 20 25 25 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 27 27 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 28 28 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 29 29 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 33 33 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 34 34 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 35 35 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 36 36 H 1.08998 * 109.47496 * 185.00343 * 16 15 14 37 37 H 1.09005 * 109.46996 * 304.99885 * 16 15 14 38 38 H 1.08007 * 120.01041 * 0.02562 * 19 18 17 39 39 H 1.08001 * 119.98244 * 180.21383 * 20 19 18 40 40 H 1.08006 * 119.98393 * 179.97438 * 23 21 20 41 41 H 1.08007 * 120.01412 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 5.6490 -3.6707 4.2817 12 1 7.5212 -2.1348 4.4039 13 1 5.4485 -1.6140 5.5508 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 8 1.6492 -1.5387 -3.9441 18 6 1.9548 -2.3066 -5.0235 19 6 3.1376 -2.0922 -5.7154 20 6 3.4489 -2.8761 -6.8096 21 6 2.5761 -3.8687 -7.2216 22 9 2.8791 -4.6309 -8.2951 23 6 1.3928 -4.0806 -6.5347 24 6 1.0812 -3.3012 -5.4375 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6055 -0.2617 2.1370 30 1 3.8532 0.4370 1.3572 31 1 3.9995 -1.0727 0.4258 32 1 7.2196 -0.7994 2.1927 33 1 1.4496 -1.4980 -1.4101 34 1 1.0870 0.6162 -2.5526 35 1 2.7588 1.0461 -2.1183 36 1 2.7260 0.1641 -4.4020 37 1 3.5506 -1.0021 -3.3397 38 1 3.8168 -1.3152 -5.3966 39 1 4.3715 -2.7116 -7.3464 40 1 0.7126 -4.8550 -6.8575 41 1 0.1578 -3.4665 -4.9021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:23 Heat of formation + Delta-G solvation = -75.889228 kcal Electronic energy + Delta-G solvation = -21102.793161 eV Core-core repulsion = 17703.800753 eV Total energy + Delta-G solvation = -3398.992408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.98678 -40.25709 -37.81481 -36.80636 -33.40743 -32.08470 -31.42731 -29.74585 -29.09333 -27.45481 -25.04279 -23.71896 -22.70317 -21.61499 -21.20336 -19.78883 -18.53637 -17.52535 -16.76772 -16.33580 -16.08801 -15.68929 -15.04217 -14.97733 -14.69229 -14.43228 -14.32477 -13.86480 -13.49518 -13.19168 -12.90031 -12.73413 -12.47294 -12.35221 -12.15086 -11.81497 -11.69306 -11.31015 -11.13005 -10.97123 -10.87223 -10.77080 -10.45728 -10.16131 -9.62291 -9.42504 -9.20539 -8.90897 -8.27151 -8.22883 -7.90632 -5.88307 -3.89177 0.92680 1.02046 3.03581 3.36466 3.38999 3.43051 3.45771 4.11031 4.39064 4.45702 4.54561 4.54911 4.86844 4.93594 5.11470 5.19685 5.23293 5.31334 5.39800 5.47286 5.56428 5.61471 5.67864 5.77872 5.82601 5.89973 5.91466 6.03802 6.10985 6.28952 6.41371 6.49392 6.67266 6.90112 7.20530 7.30756 7.46910 7.81009 7.84947 8.08262 8.23171 8.58313 9.19512 9.73369 11.22782 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.003144 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.486454 B = 8904.379347 C = 9922.050709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.671 5.671 15 C 0.064 3.936 16 C 0.058 3.942 17 O -0.311 6.311 18 C 0.132 3.868 19 C -0.181 4.181 20 C -0.111 4.111 21 C 0.051 3.949 22 F -0.144 7.144 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.006 0.994 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.342 0.658 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 -0.808 -18.115 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.302 5.302 15 C -0.066 4.066 16 C -0.018 4.018 17 O -0.224 6.224 18 C 0.086 3.914 19 C -0.200 4.200 20 C -0.130 4.130 21 C 0.032 3.968 22 F -0.123 7.123 23 C -0.132 4.132 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.903 -0.709 -17.881 20.452 hybrid contribution -0.192 -0.419 0.385 0.600 sum -10.094 -1.128 -17.495 20.230 Atomic orbital electron populations 1.22529 0.98545 1.01623 1.01201 1.21740 0.91007 0.98283 0.91567 0.91035 1.21630 1.00583 0.98431 0.93019 1.18989 0.88312 0.96419 0.96980 1.21323 0.91852 1.34057 1.08465 0.93162 1.24994 0.97131 0.95786 0.96528 1.69968 1.02183 1.44416 1.37006 0.86738 0.77559 0.80316 0.83818 1.20361 1.21403 1.20425 1.60563 1.57976 1.09037 1.02600 1.22003 1.00018 0.95452 0.89109 1.23076 0.92823 0.89036 0.96819 1.86065 1.47026 1.46108 1.43205 1.19034 0.93379 0.91653 0.87336 1.21199 0.97857 1.03138 0.97790 1.20945 0.99659 0.94909 0.97477 1.17568 0.96510 0.94593 0.88175 1.91480 1.93354 1.74369 1.53111 1.20935 0.96122 1.00562 0.95612 1.20295 1.00679 0.95676 0.97948 0.92740 0.92284 0.93733 0.93461 0.93501 0.97528 0.94992 0.93219 0.83945 0.94841 0.88881 0.91746 0.90268 0.84238 0.84543 0.84228 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.16 37.16 0.34 -2.08 16 2 C 0.08 1.37 2.59 -67.71 -0.18 1.20 16 3 H 0.07 1.20 7.80 -51.93 -0.41 0.80 16 4 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.67 -10.57 5.70 -106.72 -0.61 -11.17 16 15 C 0.06 0.81 5.90 -3.82 -0.02 0.78 16 16 C 0.06 0.65 5.08 37.15 0.19 0.84 16 17 O -0.31 -3.78 9.66 -19.57 -0.19 -3.97 16 18 C 0.13 1.50 6.69 -39.24 -0.26 1.24 16 19 C -0.18 -1.88 9.04 -39.44 -0.36 -2.24 16 20 C -0.11 -1.11 10.02 -39.54 -0.40 -1.51 16 21 C 0.05 0.54 7.30 -39.42 -0.29 0.25 16 22 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 23 C -0.11 -1.09 10.02 -39.53 -0.40 -1.48 16 24 C -0.13 -1.29 9.98 -39.44 -0.39 -1.69 16 25 H 0.05 0.72 8.13 -51.92 -0.42 0.29 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 33 H 0.34 5.20 8.03 -39.29 -0.32 4.89 16 34 H 0.03 0.39 7.44 -51.93 -0.39 0.01 16 35 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 37 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 38 H 0.14 1.25 6.30 -52.48 -0.33 0.92 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -31.46 345.87 -8.63 -40.09 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.36 Total: 0.97 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.44 Total: -19.97 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.13 Total: -37.82 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.19 Total: -3.97 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.46 -8.63 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.796 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds