Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35957 * 117.00301 * 2 1 4 4 C 1.38665 * 120.05934 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.96677 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.09777 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94086 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99800 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47163 * 90.00072 * 18 16 14 20 20 H 1.48498 * 109.46782 * 209.99860 * 18 16 14 21 21 H 1.48505 * 109.46798 * 329.99780 * 18 16 14 22 22 C 1.38265 * 120.12440 * 0.25739 * 6 5 4 23 23 C 1.38330 * 120.02805 * 359.48490 * 22 6 5 24 24 F 1.35099 * 120.04776 * 180.23481 * 23 22 6 25 25 H 1.08999 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47520 * 300.00695 * 1 2 3 27 27 H 1.08998 * 109.46608 * 60.00133 * 1 2 3 28 28 H 1.07997 * 120.01530 * 0.04494 * 4 3 2 29 29 H 1.07998 * 119.95254 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46763 * 330.00242 * 7 6 5 31 31 H 1.08995 * 109.47483 * 209.99898 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 33 33 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 34 34 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 35 35 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 36 36 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 37 37 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 38 38 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 39 39 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 40 40 H 0.96998 * 119.99555 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.98057 * 179.74545 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6053 -0.0011 6 6 3.3024 3.6777 -0.0005 7 6 3.9851 5.0211 -0.0017 8 7 4.2063 5.4592 1.3829 9 6 4.8710 6.7687 1.4210 10 1 4.5203 7.3785 0.5884 11 6 6.3847 6.5757 1.3097 12 6 4.5420 7.4695 2.7407 13 6 3.0437 7.7743 2.7965 14 6 2.7197 8.4651 4.0961 15 1 3.5039 8.6662 4.8108 16 6 1.4221 8.8404 4.3725 17 7 0.4672 8.5959 3.5018 18 14 1.0206 9.6973 5.9831 19 1 1.1449 11.1665 5.8064 20 1 -0.3683 9.3633 6.3886 21 1 1.9661 9.2433 7.0344 22 6 4.0580 2.5198 -0.0048 23 6 3.4334 1.2855 0.0011 24 9 4.1713 0.1539 0.0017 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.2138 2.3201 -0.0002 29 1 1.3343 4.5115 -0.0019 30 1 3.3565 5.7477 -0.5166 31 1 4.9434 4.9414 -0.5150 32 1 3.3393 5.4790 1.8988 33 1 6.8779 7.5473 1.3374 34 1 6.7355 5.9658 2.1421 35 1 6.6192 6.0764 0.3694 36 1 4.8120 6.8206 3.5738 37 1 5.1049 8.4004 2.8079 38 1 2.7736 8.4232 1.9633 39 1 2.4808 6.8433 2.7293 40 1 -0.4457 8.8596 3.6965 41 1 5.1364 2.5791 -0.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = -75.917911 kcal Electronic energy + Delta-G solvation = -21492.167311 eV Core-core repulsion = 18093.173659 eV Total energy + Delta-G solvation = -3398.993651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.76077 -40.12206 -38.17030 -36.74804 -33.40558 -32.12743 -30.76971 -29.83779 -28.93190 -27.51594 -25.36997 -24.30300 -22.81474 -21.52555 -21.12289 -19.55469 -18.40041 -17.05607 -16.76725 -16.37554 -16.23877 -15.30754 -15.15053 -15.03950 -14.83924 -14.53966 -14.31824 -13.96687 -13.38911 -13.00674 -12.64884 -12.50560 -12.30565 -12.25129 -12.11993 -11.77586 -11.51815 -11.40372 -11.23662 -11.10528 -11.00124 -10.85841 -10.49892 -10.27238 -9.78251 -9.30053 -9.06296 -8.95280 -8.38613 -8.23845 -7.97172 -6.03723 -4.05331 1.11190 1.17439 2.99803 3.30047 3.36481 3.40332 3.48674 4.17135 4.43810 4.59949 4.61478 4.77748 4.93906 4.96795 5.10329 5.22536 5.25583 5.32601 5.42471 5.45180 5.58283 5.67373 5.82892 5.86233 5.90541 6.05809 6.13373 6.16848 6.33962 6.49410 6.51625 6.53547 6.57893 6.89261 7.05961 7.15655 7.45343 7.58955 7.76769 7.86454 7.96395 8.39864 9.01249 9.59022 11.07555 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003797 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.688683 B = 7372.989700 C = 8678.558851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.089 3.911 4 C -0.180 4.180 5 C -0.079 4.079 6 C -0.082 4.082 7 C 0.100 3.900 8 N -0.682 5.682 9 C 0.082 3.918 10 H 0.039 0.961 11 C -0.137 4.137 12 C -0.115 4.115 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.095 4.095 23 C 0.064 3.936 24 F -0.136 7.136 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.354 0.646 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -13.433 -10.242 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.097 4.097 6 C -0.083 4.083 7 C -0.029 4.029 8 N -0.317 5.317 9 C -0.028 4.028 10 H 0.057 0.943 11 C -0.195 4.195 12 C -0.153 4.153 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.114 4.114 23 C 0.044 3.956 24 F -0.115 7.115 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.228 -13.991 -10.188 17.606 hybrid contribution -1.298 0.998 0.646 1.760 sum 1.931 -12.993 -9.542 16.236 Atomic orbital electron populations 1.23102 0.78030 1.04056 1.01670 1.86109 1.21651 1.26001 1.88926 1.18994 0.90812 0.85536 1.00342 1.21111 1.00269 0.91373 1.07088 1.21050 0.94150 0.97580 0.96955 1.19631 0.93041 0.94935 1.00721 1.20863 0.99059 0.91270 0.91737 1.60677 1.30714 1.29008 1.11319 1.21629 0.93796 0.88405 0.98924 0.94322 1.21795 0.95743 1.00752 1.01166 1.21831 1.00417 0.98581 0.94440 1.19131 0.89209 0.96319 0.97020 1.21245 0.93403 1.37838 1.03206 0.92664 1.25013 0.96515 0.96019 0.96828 1.69953 1.00797 1.47633 1.35218 0.86607 0.77595 0.79862 0.84037 1.20702 1.21249 1.19832 1.20868 1.01018 0.89442 1.00104 1.16936 0.85859 0.82942 1.09848 1.91478 1.76459 1.49125 1.94434 0.88135 0.92270 0.92482 0.84517 0.84735 0.94080 0.90466 0.82424 0.92995 0.92333 0.93781 0.92425 0.92673 0.96960 0.96666 0.93067 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.92 10.36 -19.60 -0.20 -4.12 16 3 C 0.09 1.18 6.69 -39.18 -0.26 0.92 16 4 C -0.18 -2.15 9.04 -39.44 -0.36 -2.51 16 5 C -0.08 -1.00 9.69 -39.60 -0.38 -1.39 16 6 C -0.08 -1.09 5.39 -104.61 -0.56 -1.65 16 7 C 0.10 1.35 5.61 -4.98 -0.03 1.32 16 8 N -0.68 -11.01 6.30 -107.99 -0.68 -11.69 16 9 C 0.08 1.36 2.65 -67.71 -0.18 1.18 16 10 H 0.04 0.66 7.80 -51.93 -0.40 0.26 16 11 C -0.14 -1.93 9.41 37.16 0.35 -1.58 16 12 C -0.11 -2.31 4.74 -26.73 -0.13 -2.43 16 13 C 0.02 0.50 4.80 -27.88 -0.13 0.37 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.09 -1.23 9.67 -39.54 -0.38 -1.61 16 23 C 0.06 0.89 7.31 -39.30 -0.29 0.60 16 24 F -0.14 -2.00 17.11 2.25 0.04 -1.96 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 29 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 31 H 0.08 0.94 7.38 -51.93 -0.38 0.56 16 32 H 0.35 6.43 6.46 -39.29 -0.25 6.18 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.39 6.42 -51.93 -0.33 0.06 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -30.42 343.47 -7.95 -38.37 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.23 Total: 2.19 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.77 Total: -18.83 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.06 Total: -37.27 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.42 -7.95 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.545 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds