Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35957 * 117.00301 * 2 1 4 4 C 1.38665 * 120.05934 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.96677 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.09777 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94086 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99800 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47163 * 90.00072 * 18 16 14 20 20 H 1.48498 * 109.46782 * 209.99860 * 18 16 14 21 21 H 1.48505 * 109.46798 * 329.99780 * 18 16 14 22 22 C 1.38265 * 120.12440 * 0.25739 * 6 5 4 23 23 C 1.38330 * 120.02805 * 359.48490 * 22 6 5 24 24 F 1.35099 * 120.04776 * 180.23481 * 23 22 6 25 25 H 1.08999 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47520 * 300.00695 * 1 2 3 27 27 H 1.08998 * 109.46608 * 60.00133 * 1 2 3 28 28 H 1.07997 * 120.01530 * 0.04494 * 4 3 2 29 29 H 1.07998 * 119.95254 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46763 * 330.00242 * 7 6 5 31 31 H 1.08995 * 109.47483 * 209.99898 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 33 33 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 34 34 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 35 35 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 36 36 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 37 37 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 38 38 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 39 39 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 40 40 H 0.96998 * 119.99555 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.98057 * 179.74545 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6053 -0.0011 6 6 3.3024 3.6777 -0.0005 7 6 3.9851 5.0211 -0.0017 8 7 4.2063 5.4592 1.3829 9 6 4.8710 6.7687 1.4210 10 1 4.5203 7.3785 0.5884 11 6 6.3847 6.5757 1.3097 12 6 4.5420 7.4695 2.7407 13 6 3.0437 7.7743 2.7965 14 6 2.7197 8.4651 4.0961 15 1 3.5039 8.6662 4.8108 16 6 1.4221 8.8404 4.3725 17 7 0.4672 8.5959 3.5018 18 14 1.0206 9.6973 5.9831 19 1 1.1449 11.1665 5.8064 20 1 -0.3683 9.3633 6.3886 21 1 1.9661 9.2433 7.0344 22 6 4.0580 2.5198 -0.0048 23 6 3.4334 1.2855 0.0011 24 9 4.1713 0.1539 0.0017 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.2138 2.3201 -0.0002 29 1 1.3343 4.5115 -0.0019 30 1 3.3565 5.7477 -0.5166 31 1 4.9434 4.9414 -0.5150 32 1 3.3393 5.4790 1.8988 33 1 6.8779 7.5473 1.3374 34 1 6.7355 5.9658 2.1421 35 1 6.6192 6.0764 0.3694 36 1 4.8120 6.8206 3.5738 37 1 5.1049 8.4004 2.8079 38 1 2.7736 8.4232 1.9633 39 1 2.4808 6.8433 2.7293 40 1 -0.4457 8.8596 3.6965 41 1 5.1364 2.5791 -0.0086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -93.658190 kcal Electronic energy + Delta-G solvation = -21492.936587 eV Core-core repulsion = 18093.173659 eV Total energy + Delta-G solvation = -3399.762928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84073 -41.06905 -39.23788 -38.01591 -35.28602 -33.58153 -31.75622 -31.38838 -30.13085 -28.31917 -27.08141 -25.57197 -23.78921 -23.21915 -22.22480 -21.03428 -19.33090 -18.53825 -17.98423 -17.79164 -17.17575 -16.63213 -16.51904 -16.38858 -16.05143 -15.79742 -15.20572 -15.12445 -14.52882 -14.43815 -14.30623 -14.10722 -13.38447 -13.25387 -13.19958 -13.01506 -12.97043 -12.83072 -12.73419 -12.33571 -12.29138 -12.05912 -12.00400 -11.76517 -11.55215 -11.27652 -10.92726 -10.52770 -9.95164 -9.37283 -9.12147 -8.19184 -6.28692 0.10113 0.17459 1.40514 1.40911 1.52078 2.17508 2.41659 2.46956 3.14223 3.17399 3.43858 3.65917 3.78910 4.02259 4.12207 4.22880 4.35267 4.36610 4.38201 4.47903 4.50696 4.54098 4.69399 4.72911 4.82125 4.88537 5.02894 5.05313 5.07904 5.12274 5.14111 5.25003 5.48278 5.51139 5.56592 5.62208 5.73439 5.86537 6.22666 6.26314 6.28466 6.44532 6.87445 7.40112 8.92002 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003797 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.688683 B = 7372.989700 C = 8678.558851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.086 3.914 4 C -0.177 4.177 5 C -0.085 4.085 6 C -0.091 4.091 7 C 0.103 3.897 8 N -0.685 5.685 9 C 0.087 3.913 10 H 0.034 0.966 11 C -0.129 4.129 12 C -0.103 4.103 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.092 4.092 23 C 0.042 3.958 24 F -0.145 7.145 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.339 0.661 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.057 0.943 38 H -0.013 1.013 39 H 0.001 0.999 40 H 0.263 0.737 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -13.554 -10.089 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.039 3.961 4 C -0.196 4.196 5 C -0.104 4.104 6 C -0.092 4.092 7 C -0.026 4.026 8 N -0.318 5.318 9 C -0.023 4.023 10 H 0.052 0.948 11 C -0.187 4.187 12 C -0.141 4.141 13 C -0.010 4.010 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.190 1.190 22 C -0.111 4.111 23 C 0.022 3.978 24 F -0.124 7.124 25 H 0.140 0.860 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.178 0.822 29 H 0.154 0.846 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.159 0.841 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.005 0.995 39 H 0.019 0.981 40 H 0.071 0.929 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.475 -14.117 -10.046 17.672 hybrid contribution -1.439 0.993 0.569 1.839 sum 2.036 -13.124 -9.478 16.316 Atomic orbital electron populations 1.23427 0.75809 1.05924 1.02606 1.86092 1.24011 1.25767 1.88742 1.19148 0.90831 0.86241 0.99868 1.21319 1.01419 0.90577 1.06249 1.21197 0.94270 0.98072 0.96850 1.19620 0.93264 0.94766 1.01531 1.20895 1.00062 0.91302 0.90292 1.60761 1.29820 1.28451 1.12795 1.21561 0.95823 0.88368 0.96525 0.94773 1.21721 0.93236 1.01595 1.02106 1.21652 0.96944 0.99016 0.96449 1.19005 0.92326 0.94714 0.94931 1.21698 0.93793 1.38245 1.04378 0.92609 1.25881 0.96424 0.96690 1.00388 1.70069 1.01194 1.48562 1.37118 0.85542 0.77486 0.78845 0.79760 1.19903 1.20747 1.19022 1.20970 1.01682 0.89002 0.99443 1.17196 0.86444 0.83014 1.11125 1.91448 1.76700 1.49563 1.94641 0.85960 0.91714 0.91079 0.82227 0.84620 0.94307 0.88652 0.84139 0.91969 0.92564 0.91850 0.92928 0.92458 0.99508 0.98108 0.92863 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.00 10.36 -93.06 -0.96 -8.97 16 3 C 0.09 2.21 6.69 22.53 0.15 2.36 16 4 C -0.18 -4.07 9.04 22.36 0.20 -3.87 16 5 C -0.09 -2.14 9.69 22.26 0.22 -1.92 16 6 C -0.09 -2.34 5.39 -19.85 -0.11 -2.45 16 7 C 0.10 2.69 5.61 85.56 0.48 3.17 16 8 N -0.69 -21.76 6.30 -495.56 -3.12 -24.88 16 9 C 0.09 2.81 2.65 44.91 0.12 2.93 16 10 H 0.03 1.14 7.80 -2.38 -0.02 1.13 16 11 C -0.13 -3.35 9.41 71.98 0.68 -2.67 16 12 C -0.10 -4.12 4.74 30.60 0.15 -3.98 16 13 C 0.03 1.39 4.80 29.85 0.14 1.54 16 14 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 15 H 0.06 3.05 7.74 -2.92 -0.02 3.03 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 18 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C -0.09 -2.31 9.67 22.30 0.22 -2.10 16 23 C 0.04 1.15 7.31 22.45 0.16 1.32 16 24 F -0.14 -4.23 17.11 44.97 0.77 -3.46 16 25 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 27 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.16 2.80 6.30 -2.91 -0.02 2.78 16 29 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 31 H 0.10 2.14 7.38 -2.39 -0.02 2.12 16 32 H 0.34 12.50 6.46 -89.69 -0.58 11.92 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.41 7.45 -2.38 -0.02 1.40 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.00 0.04 6.42 -2.39 -0.02 0.02 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.90 343.47 3.65 -61.25 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.44 Total: 18.95 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.21 Total: -33.94 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.84 Total: -79.73 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.96 Total: -8.97 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.77 Total: -3.46 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.90 3.65 -61.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.406 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds