Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35951 * 116.99537 * 2 1 4 4 C 1.38664 * 120.06562 * 359.97438 * 3 2 1 5 5 C 1.38185 * 119.96665 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.09604 * 0.26231 * 5 4 3 7 7 C 1.50698 * 119.93318 * 179.74253 * 6 5 4 8 8 N 1.46905 * 109.46892 * 89.99920 * 7 6 5 9 9 C 1.46901 * 110.99653 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47383 * 324.99526 * 9 8 7 11 11 C 1.53004 * 109.47470 * 85.00117 * 9 8 7 12 12 C 1.53001 * 109.47127 * 204.99989 * 9 8 7 13 13 C 1.52998 * 109.47401 * 64.99756 * 12 9 8 14 14 C 1.50700 * 109.47340 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99828 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00287 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99806 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47003 * 89.99755 * 18 16 14 20 20 H 1.48495 * 109.47452 * 210.00107 * 18 16 14 21 21 H 1.48507 * 109.47179 * 330.00183 * 18 16 14 22 22 C 1.38255 * 120.12638 * 359.48383 * 6 5 4 23 23 C 1.38338 * 120.02732 * 0.51327 * 22 6 5 24 24 F 1.35100 * 120.04156 * 179.72509 * 23 22 6 25 25 H 1.08999 * 109.47067 * 299.99627 * 1 2 3 26 26 H 1.08999 * 109.47212 * 60.00171 * 1 2 3 27 27 H 1.09005 * 109.46924 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.01363 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.94689 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47046 * 209.99720 * 7 6 5 31 31 H 1.08992 * 109.47624 * 329.99848 * 7 6 5 32 32 H 1.00902 * 111.00052 * 303.94958 * 8 7 6 33 33 H 1.09004 * 109.46736 * 299.99714 * 11 9 8 34 34 H 1.09003 * 109.47300 * 59.99359 * 11 9 8 35 35 H 1.08997 * 109.47330 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47262 * 185.00366 * 12 9 8 37 37 H 1.09005 * 109.46902 * 304.99806 * 12 9 8 38 38 H 1.09002 * 109.47110 * 300.00468 * 13 12 9 39 39 H 1.08997 * 109.46520 * 59.99839 * 13 12 9 40 40 H 0.96995 * 120.00469 * 179.97438 * 17 16 14 41 41 H 1.07996 * 119.98563 * 180.23603 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9216 3.6053 0.0000 6 6 3.3023 3.6777 -0.0044 7 6 3.9848 5.0213 -0.0097 8 7 4.2108 5.4611 1.3737 9 6 4.8766 6.7701 1.4077 10 1 5.5745 6.8447 0.5737 11 6 3.8280 7.8787 1.2960 12 6 5.6391 6.9204 2.7256 13 6 6.7689 5.8901 2.7815 14 6 7.5195 6.0377 4.0799 15 1 7.2205 6.7907 4.7939 16 6 8.5881 5.2114 4.3561 17 7 8.9520 4.2941 3.4868 18 14 9.5191 5.3948 5.9652 19 1 8.8993 4.5255 6.9975 20 1 10.9352 4.9945 5.7662 21 1 9.4627 6.8102 6.4111 22 6 4.0579 2.5199 0.0014 23 6 3.4333 1.2856 0.0009 24 9 4.1713 0.1541 0.0010 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2136 2.3200 -0.0005 29 1 1.3340 4.5115 -0.0008 30 1 4.9413 4.9409 -0.5262 31 1 3.3545 5.7471 -0.5233 32 1 3.3457 5.4815 1.8925 33 1 3.2848 7.7717 0.3570 34 1 3.1301 7.8042 2.1300 35 1 4.3220 8.8500 1.3217 36 1 6.0592 7.9241 2.7899 37 1 4.9574 6.7577 3.5604 38 1 6.3487 4.8864 2.7172 39 1 7.4505 6.0528 1.9467 40 1 9.7039 3.7130 3.6809 41 1 5.1362 2.5792 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -93.515328 kcal Electronic energy + Delta-G solvation = -21505.417758 eV Core-core repulsion = 18105.661025 eV Total energy + Delta-G solvation = -3399.756733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.85380 -41.05183 -39.21223 -37.95056 -35.30966 -33.55991 -31.74912 -31.43892 -29.90458 -28.25918 -26.98563 -25.58082 -23.78276 -23.14860 -22.26419 -21.31604 -19.31000 -18.36335 -17.97830 -17.78135 -17.17260 -16.60784 -16.45105 -16.10080 -16.05114 -15.77766 -15.23674 -15.04142 -14.55523 -14.49122 -14.15183 -13.94404 -13.72327 -13.23325 -13.16358 -13.06603 -12.85441 -12.79488 -12.74726 -12.34301 -12.27331 -12.04878 -11.97436 -11.67530 -11.49646 -11.18708 -10.93878 -10.47501 -9.93507 -9.24356 -8.99903 -8.12726 -6.23136 0.12359 0.19481 1.39478 1.41420 1.52015 2.19802 2.44109 2.49644 3.19598 3.21486 3.47864 3.68643 3.83036 4.06091 4.11818 4.24417 4.36481 4.40013 4.40738 4.45764 4.52830 4.56114 4.72337 4.74949 4.83490 4.91570 5.03792 5.07950 5.10020 5.15655 5.16490 5.34603 5.50092 5.53628 5.60914 5.65725 5.91399 6.05365 6.28317 6.31723 6.36326 6.69532 6.97682 7.45019 8.98376 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.003872 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.666992 B = 7229.940896 C = 8488.046295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.086 3.914 4 C -0.173 4.173 5 C -0.070 4.070 6 C -0.091 4.091 7 C 0.108 3.892 8 N -0.691 5.691 9 C 0.091 3.909 10 H 0.061 0.939 11 C -0.168 4.168 12 C -0.088 4.088 13 C 0.038 3.962 14 C -0.542 4.542 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.262 1.262 22 C -0.107 4.107 23 C 0.032 3.968 24 F -0.153 7.153 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.002 0.998 39 H -0.024 1.024 40 H 0.260 0.740 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.029 -0.908 -10.163 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.040 3.960 4 C -0.191 4.191 5 C -0.089 4.089 6 C -0.091 4.091 7 C -0.020 4.020 8 N -0.323 5.323 9 C -0.019 4.019 10 H 0.080 0.920 11 C -0.227 4.227 12 C -0.127 4.127 13 C 0.001 3.999 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.127 4.127 23 C 0.012 3.988 24 F -0.132 7.132 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.191 0.809 29 H 0.183 0.817 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.020 0.980 39 H -0.006 1.006 40 H 0.069 0.931 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.215 -1.621 -10.127 23.564 hybrid contribution 0.543 -0.045 0.546 0.772 sum -20.672 -1.666 -9.581 22.845 Atomic orbital electron populations 1.23458 0.75501 1.05889 1.02942 1.86111 1.24349 1.26003 1.88746 1.19142 0.90137 0.86853 0.99875 1.21442 1.01634 0.90188 1.05824 1.21261 0.92899 0.98658 0.96066 1.19674 0.94015 0.94011 1.01447 1.20801 0.99356 0.91689 0.90184 1.60389 1.29664 1.29182 1.13026 1.21524 0.95458 0.87329 0.97565 0.92045 1.22384 0.99004 0.98963 1.02305 1.21461 0.96750 0.98115 0.96324 1.18828 0.92411 0.95026 0.93659 1.21836 1.14268 1.17142 1.04747 0.92609 1.25966 0.98538 0.95026 1.00491 1.70122 1.28408 1.21562 1.37322 0.85527 0.77572 0.78863 0.79547 1.20012 1.20878 1.18606 1.20993 1.00990 0.90521 1.00153 1.17352 0.87169 0.82644 1.11636 1.91431 1.77159 1.49935 1.94711 0.91091 0.90643 0.86458 0.80912 0.81662 0.91823 0.91395 0.83570 0.91254 0.91879 0.91878 0.93205 0.93479 0.97954 1.00575 0.93143 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -8.13 10.36 -93.00 -0.96 -9.09 16 3 C 0.09 2.21 6.69 22.53 0.15 2.36 16 4 C -0.17 -3.11 9.04 22.36 0.20 -2.91 16 5 C -0.07 -1.28 9.69 22.26 0.22 -1.07 16 6 C -0.09 -2.28 5.39 -19.85 -0.11 -2.38 16 7 C 0.11 2.72 5.61 85.56 0.48 3.20 16 8 N -0.69 -21.07 5.69 -495.57 -2.82 -23.89 16 9 C 0.09 2.86 2.59 44.92 0.12 2.98 16 10 H 0.06 2.07 7.80 -2.39 -0.02 2.05 16 11 C -0.17 -3.74 9.16 71.98 0.66 -3.08 16 12 C -0.09 -3.64 4.83 30.59 0.15 -3.49 16 13 C 0.04 2.08 4.86 29.85 0.15 2.22 16 14 C -0.54 -32.20 9.11 25.60 0.23 -31.96 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 17 N -0.93 -59.70 13.29 21.45 0.28 -59.42 16 18 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 22 C -0.11 -3.35 9.67 22.30 0.22 -3.13 16 23 C 0.03 1.01 7.31 22.45 0.16 1.17 16 24 F -0.15 -5.56 17.11 44.97 0.77 -4.79 16 25 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 26 H 0.08 0.60 7.66 -2.39 -0.02 0.59 16 27 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.17 1.74 6.30 -2.91 -0.02 1.72 16 29 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 31 H 0.07 1.27 7.38 -2.39 -0.02 1.25 16 32 H 0.35 9.17 8.47 -89.69 -0.76 8.41 16 33 H 0.07 1.23 7.45 -2.38 -0.02 1.22 16 34 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.00 0.12 7.75 -2.39 -0.02 0.10 16 39 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 40 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -75.30 346.02 3.75 -71.54 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.26 Total: 11.94 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.20 Total: -34.51 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.54 Total: -83.30 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.96 Total: -9.09 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.77 Total: -4.79 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.30 3.75 -71.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.971 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds