Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99896 * 2 1 4 4 C 1.38668 * 120.06363 * 0.25870 * 3 2 1 5 5 C 1.38177 * 119.97074 * 180.25075 * 4 3 2 6 6 C 1.50696 * 119.95288 * 179.76597 * 5 4 3 7 7 N 1.46899 * 109.47315 * 269.72353 * 6 5 4 8 8 C 1.46898 * 111.00287 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47084 * 34.99544 * 8 7 6 10 10 C 1.53006 * 109.47006 * 274.99842 * 8 7 6 11 11 C 1.52999 * 109.47222 * 155.00460 * 8 7 6 12 12 C 1.53004 * 109.46978 * 294.99478 * 11 8 7 13 13 C 1.50699 * 109.47238 * 180.02562 * 12 11 8 14 14 H 1.07993 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99881 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00128 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99723 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47210 * 59.99816 * 17 15 13 19 19 H 1.48500 * 109.46742 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47001 * 299.99188 * 17 15 13 21 21 C 1.38265 * 120.09505 * 359.49287 * 5 4 3 22 22 C 1.38263 * 120.12443 * 0.24800 * 21 5 4 23 23 C 1.38328 * 120.03089 * 0.02562 * 22 21 5 24 24 F 1.35097 * 120.05207 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47368 * 299.99787 * 1 2 3 27 27 H 1.09002 * 109.47273 * 59.99675 * 1 2 3 28 28 H 1.08007 * 120.01445 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46985 * 149.72609 * 6 5 4 30 30 H 1.08998 * 109.47524 * 29.72327 * 6 5 4 31 31 H 1.00901 * 110.99857 * 56.04108 * 7 6 5 32 32 H 1.09001 * 109.46801 * 300.00064 * 10 8 7 33 33 H 1.09001 * 109.46998 * 59.99660 * 10 8 7 34 34 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.47903 * 54.99355 * 11 8 7 36 36 H 1.09002 * 109.47016 * 175.00121 * 11 8 7 37 37 H 1.09000 * 109.47210 * 300.00626 * 12 11 8 38 38 H 1.09007 * 109.46638 * 59.99986 * 12 11 8 39 39 H 0.96993 * 119.99994 * 180.02562 * 16 15 13 40 40 H 1.08001 * 119.93726 * 180.27765 * 21 5 4 41 41 H 1.07996 * 119.98145 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3752 0.0054 5 6 1.9215 3.6053 0.0002 6 6 1.1017 4.8698 0.0007 7 7 0.8353 5.2813 -1.3840 8 6 0.0370 6.5138 -1.4227 9 1 0.3221 7.1576 -0.5907 10 6 -1.4481 6.1632 -1.3106 11 6 0.2902 7.2443 -2.7430 12 6 1.7483 7.7046 -2.7997 13 6 1.9975 8.4246 -4.0999 14 1 1.1962 8.5425 -4.8141 15 6 3.2488 8.9329 -4.3775 16 7 4.2247 8.7897 -3.5075 17 14 3.5576 9.8260 -5.9889 18 1 2.6623 11.0073 -6.0795 19 1 4.9728 10.2726 -6.0438 20 1 3.2832 8.9085 -7.1238 21 6 3.3023 3.6778 0.0001 22 6 4.0579 2.5199 0.0001 23 6 3.4334 1.2857 -0.0003 24 9 4.1713 0.1540 -0.0009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2136 2.3201 0.0101 29 1 1.6509 5.6586 0.5149 30 1 0.1573 4.6904 0.5145 31 1 0.3840 4.5414 -1.9007 32 1 -1.7332 5.5194 -2.1427 33 1 -1.6286 5.6427 -0.3701 34 1 -2.0405 7.0778 -1.3388 35 1 0.0895 6.5701 -3.5757 36 1 -0.3673 8.1110 -2.8106 37 1 1.9491 8.3788 -1.9671 38 1 2.4058 6.8378 -2.7320 39 1 5.1048 9.1476 -3.7027 40 1 3.7914 4.6407 0.0005 41 1 5.1362 2.5792 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = -73.285640 kcal Electronic energy + Delta-G solvation = -21568.784427 eV Core-core repulsion = 18169.904919 eV Total energy + Delta-G solvation = -3398.879508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.77009 -40.17537 -38.09453 -36.82308 -33.45621 -32.25148 -30.41344 -29.99461 -28.76509 -27.52231 -25.28854 -24.49591 -22.63662 -21.55573 -21.26624 -19.84243 -18.16615 -17.17613 -16.82836 -16.26687 -16.10722 -15.34550 -15.12390 -15.01992 -14.61450 -14.48547 -14.34968 -14.15211 -13.28454 -13.00179 -12.93040 -12.52545 -12.39422 -12.20927 -12.05252 -11.90940 -11.52434 -11.34616 -11.21352 -11.17044 -11.06418 -10.79603 -10.46335 -10.22219 -9.64090 -9.21736 -8.94998 -8.91142 -8.24536 -8.20698 -7.92219 -5.88002 -3.88930 1.04184 1.23581 2.97230 3.39056 3.43360 3.45799 3.48471 4.18169 4.46185 4.54691 4.67051 4.74710 4.87829 4.90043 5.02637 5.17040 5.23867 5.30692 5.38285 5.44980 5.47620 5.54975 5.62944 5.74786 5.90576 5.96716 6.04841 6.21221 6.23169 6.36107 6.53654 6.57887 6.64705 6.87109 7.14379 7.28676 7.43370 7.73458 7.84764 8.08009 8.23503 8.58141 9.19685 9.73594 11.23058 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.003732 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.945730 B = 7500.380385 C = 8535.672993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.090 3.910 4 C -0.177 4.177 5 C -0.045 4.045 6 C 0.098 3.902 7 N -0.665 5.665 8 C 0.084 3.916 9 H 0.073 0.927 10 C -0.181 4.181 11 C -0.098 4.098 12 C 0.030 3.970 13 C -0.520 4.520 14 H 0.050 0.950 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.098 4.098 22 C -0.115 4.115 23 C 0.063 3.937 24 F -0.137 7.137 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.033 0.967 31 H 0.336 0.664 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.007 0.993 38 H 0.033 0.967 39 H 0.258 0.742 40 H 0.142 0.858 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 -14.861 10.619 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.044 3.956 4 C -0.197 4.197 5 C -0.046 4.046 6 C -0.031 4.031 7 N -0.295 5.295 8 C -0.026 4.026 9 H 0.092 0.908 10 C -0.240 4.240 11 C -0.136 4.136 12 C -0.007 4.007 13 C -0.558 4.558 14 H 0.068 0.932 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.117 4.117 22 C -0.134 4.134 23 C 0.043 3.957 24 F -0.116 7.116 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.154 0.846 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.160 0.840 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.315 -14.712 10.579 19.541 hybrid contribution -0.777 0.090 -0.706 1.054 sum -8.092 -14.622 9.873 19.410 Atomic orbital electron populations 1.23083 0.78148 1.04025 1.01516 1.86116 1.21546 1.25969 1.89015 1.18908 0.90762 0.85393 1.00551 1.20992 0.99928 0.91085 1.07676 1.19728 0.94172 0.93922 0.96802 1.20930 0.96864 0.93733 0.91600 1.60551 1.51705 1.06345 1.10880 1.21772 0.88771 0.91147 1.00877 0.90830 1.22547 0.99096 1.01814 1.00547 1.21632 1.01269 0.97344 0.93382 1.18995 0.89717 0.96309 0.95724 1.21312 0.95494 1.35421 1.03572 0.93206 1.24984 0.96375 0.96451 0.96531 1.69957 1.01955 1.46449 1.35081 0.86752 0.77021 0.80158 0.84583 1.20443 1.21390 1.20379 1.20979 0.92968 0.98504 0.99230 1.21067 1.01224 0.90079 1.01009 1.16990 0.85892 0.82992 1.09825 1.91476 1.76455 1.49220 1.94412 0.88139 0.92592 0.92397 0.84930 0.89615 0.94900 0.84647 0.92794 0.93794 0.92142 0.93490 0.93476 0.97497 0.94860 0.93198 0.84027 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.82 10.36 -19.60 -0.20 -4.02 16 3 C 0.09 1.16 6.69 -39.17 -0.26 0.90 16 4 C -0.18 -2.06 8.69 -39.45 -0.34 -2.40 16 5 C -0.05 -0.58 5.39 -104.64 -0.56 -1.14 16 6 C 0.10 1.24 5.61 -4.98 -0.03 1.21 16 7 N -0.66 -10.11 5.69 -108.00 -0.61 -10.73 16 8 C 0.08 1.33 2.59 -67.71 -0.18 1.15 16 9 H 0.07 1.20 7.80 -51.93 -0.40 0.80 16 10 C -0.18 -2.27 9.16 37.16 0.34 -1.93 16 11 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 12 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.10 -1.29 9.69 -39.56 -0.38 -1.67 16 22 C -0.12 -1.46 10.02 -39.54 -0.40 -1.86 16 23 C 0.06 0.87 7.31 -39.30 -0.29 0.58 16 24 F -0.14 -1.99 17.11 2.25 0.04 -1.96 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 27 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 29 H 0.09 1.14 8.00 -51.93 -0.42 0.72 16 30 H 0.03 0.36 7.38 -51.93 -0.38 -0.02 16 31 H 0.34 4.73 8.47 -39.29 -0.33 4.40 16 32 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.01 346.01 -8.01 -40.02 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.37 Total: 0.06 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.78 Total: -19.11 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.12 Total: -37.19 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.01 -8.01 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.269 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds