Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35945 * 117.00282 * 2 1 4 4 C 1.38664 * 120.06673 * 0.24558 * 3 2 1 5 5 C 1.38179 * 119.97292 * 180.25804 * 4 3 2 6 6 C 1.50697 * 119.94980 * 179.77040 * 5 4 3 7 7 N 1.46901 * 109.46943 * 269.71988 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47224 * 325.00460 * 8 7 6 10 10 C 1.53002 * 109.47102 * 85.00132 * 8 7 6 11 11 C 1.52996 * 109.46819 * 205.00022 * 8 7 6 12 12 C 1.53002 * 109.47140 * 65.00372 * 11 8 7 13 13 C 1.50702 * 109.47074 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00093 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99892 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99942 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00062 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46941 * 90.00194 * 17 15 13 19 19 H 1.48499 * 109.46901 * 210.00257 * 17 15 13 20 20 H 1.48495 * 109.47016 * 329.99706 * 17 15 13 21 21 C 1.38258 * 120.09568 * 359.49208 * 5 4 3 22 22 C 1.38257 * 120.12355 * 0.25420 * 21 5 4 23 23 C 1.38333 * 120.03059 * 0.02562 * 22 21 5 24 24 F 1.35108 * 120.04579 * 179.97438 * 23 22 21 25 25 H 1.09005 * 109.46713 * 60.00600 * 1 2 3 26 26 H 1.09003 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47500 * 300.00802 * 1 2 3 28 28 H 1.08005 * 120.01243 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.46763 * 149.72430 * 6 5 4 30 30 H 1.08995 * 109.47483 * 29.72086 * 6 5 4 31 31 H 1.00901 * 111.00067 * 303.95401 * 7 6 5 32 32 H 1.09000 * 109.46959 * 59.99562 * 10 8 7 33 33 H 1.08999 * 109.47105 * 180.02562 * 10 8 7 34 34 H 1.08996 * 109.46950 * 299.99914 * 10 8 7 35 35 H 1.09006 * 109.47142 * 184.99909 * 11 8 7 36 36 H 1.08991 * 109.47453 * 304.99990 * 11 8 7 37 37 H 1.08993 * 109.46652 * 299.99542 * 12 11 8 38 38 H 1.09003 * 109.46959 * 59.99778 * 12 11 8 39 39 H 0.97002 * 119.99492 * 180.02562 * 16 15 13 40 40 H 1.07998 * 119.93977 * 180.28251 * 21 5 4 41 41 H 1.08004 * 119.98670 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 0.0051 5 6 1.9218 3.6052 -0.0003 6 6 1.1021 4.8697 0.0001 7 7 0.8358 5.2810 -1.3848 8 6 0.0375 6.5136 -1.4236 9 1 -0.6668 6.5168 -0.5917 10 6 0.9647 7.7255 -1.3114 11 6 -0.7324 6.5811 -2.7441 12 6 -1.7486 5.4388 -2.8008 13 6 -2.5074 5.5056 -4.1012 14 1 -2.2871 6.2851 -4.8155 15 6 -3.4828 4.5716 -4.3790 16 7 -4.1446 4.6296 -5.5141 17 14 -3.8642 3.2236 -3.1432 18 1 -4.9249 3.6896 -2.2142 19 1 -4.3330 2.0116 -3.8618 20 1 -2.6380 2.8982 -2.3715 21 6 3.3025 3.6776 -0.0002 22 6 4.0580 2.5197 0.0000 23 6 3.4333 1.2855 -0.0004 24 9 4.1713 0.1538 -0.0008 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2138 2.3201 0.0096 29 1 1.6513 5.6586 0.5142 30 1 0.1576 4.6904 0.5138 31 1 1.6958 5.3912 -1.9010 32 1 1.6691 7.7224 -2.1432 33 1 0.3723 8.6401 -1.3397 34 1 1.5132 7.6774 -0.3707 35 1 -1.2545 7.5356 -2.8119 36 1 -0.0349 6.4886 -3.5765 37 1 -1.2265 4.4844 -2.7331 38 1 -2.4462 5.5313 -1.9684 39 1 -4.8311 3.9726 -5.7093 40 1 3.7918 4.6404 0.0002 41 1 5.1364 2.5788 -0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = -71.031256 kcal Electronic energy + Delta-G solvation = -21837.753249 eV Core-core repulsion = 18438.971499 eV Total energy + Delta-G solvation = -3398.781750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.84390 -40.19537 -38.16734 -36.92915 -33.52720 -32.29627 -30.58243 -30.25125 -28.97364 -27.45867 -25.49515 -24.63068 -22.71101 -21.55414 -21.08676 -19.91092 -18.19176 -17.19930 -16.94716 -16.58809 -16.25219 -15.50348 -15.16190 -15.12502 -14.68048 -14.36390 -14.26460 -14.03489 -13.61536 -13.10489 -12.92866 -12.68270 -12.50284 -12.29407 -12.25317 -11.95015 -11.67004 -11.58886 -11.39228 -11.20862 -11.15856 -10.84537 -10.51828 -9.85390 -9.68177 -9.50744 -9.04479 -8.98186 -8.46006 -8.34214 -8.06082 -5.96698 -3.92557 0.96484 1.12435 3.01188 3.33941 3.37948 3.40614 3.46448 4.12529 4.39971 4.52149 4.53170 4.67810 4.92868 5.01539 5.02242 5.09878 5.19758 5.29895 5.38781 5.39136 5.42407 5.44958 5.53848 5.61364 5.84812 5.88377 5.94518 6.02425 6.16107 6.23125 6.37000 6.48699 6.50716 6.68526 7.06975 7.13257 7.25072 7.48227 7.60361 7.71621 7.92013 8.63832 9.09821 9.67371 11.17381 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.005043 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.983442 B = 5550.519497 C = 7118.621687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.096 3.904 4 C -0.157 4.157 5 C -0.045 4.045 6 C 0.096 3.904 7 N -0.670 5.670 8 C 0.081 3.919 9 H 0.073 0.927 10 C -0.181 4.181 11 C -0.090 4.090 12 C -0.006 4.006 13 C -0.516 4.516 14 H 0.068 0.932 15 C 0.064 3.936 16 N -0.909 5.909 17 Si 0.879 3.121 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.263 1.263 21 C -0.125 4.125 22 C -0.117 4.117 23 C 0.062 3.938 24 F -0.136 7.136 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.141 0.859 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.340 0.660 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.002 0.998 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.736 -2.947 15.264 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.050 3.950 4 C -0.177 4.177 5 C -0.046 4.046 6 C -0.032 4.032 7 N -0.300 5.300 8 C -0.029 4.029 9 H 0.091 0.909 10 C -0.240 4.240 11 C -0.128 4.128 12 C -0.044 4.044 13 C -0.554 4.554 14 H 0.086 0.914 15 C -0.136 4.136 16 N -0.549 5.549 17 Si 0.707 3.293 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.187 1.187 21 C -0.144 4.144 22 C -0.136 4.136 23 C 0.042 3.958 24 F -0.115 7.115 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.139 -3.686 15.093 21.006 hybrid contribution 0.185 -0.153 0.723 0.762 sum 14.323 -3.839 15.815 21.680 Atomic orbital electron populations 1.23178 0.77478 1.04343 1.02146 1.86102 1.22058 1.25730 1.88644 1.19019 0.90778 0.85770 0.99439 1.21110 1.00738 0.90717 1.05090 1.19707 0.93408 0.94655 0.96852 1.20927 0.98490 0.92232 0.91592 1.60602 1.23693 1.34750 1.10999 1.21804 0.94460 0.85929 1.00666 0.90915 1.22520 1.00457 1.00190 1.00797 1.21452 0.97648 0.99981 0.93720 1.19473 0.93577 0.95082 0.96226 1.21267 1.18144 1.13537 1.02500 0.91393 1.25027 0.95878 0.97606 0.95138 1.69931 1.24773 1.36549 1.23638 0.86773 0.78872 0.81882 0.81795 1.20634 1.21693 1.18698 1.20802 0.92980 0.97969 1.02631 1.20921 1.00813 0.90143 1.01681 1.16972 0.85946 0.82978 1.09894 1.91483 1.76388 1.49220 1.94402 0.91728 0.87897 0.92380 0.84120 0.94298 0.90100 0.84190 0.92553 0.92020 0.93628 0.92806 0.92796 0.95098 0.98014 0.92964 0.85108 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.27 10.36 -19.57 -0.20 -4.47 16 3 C 0.10 1.31 6.69 -39.18 -0.26 1.05 16 4 C -0.16 -2.03 8.69 -39.45 -0.34 -2.37 16 5 C -0.05 -0.54 5.39 -104.64 -0.56 -1.10 16 6 C 0.10 1.13 5.61 -4.98 -0.03 1.10 16 7 N -0.67 -9.44 5.69 -107.99 -0.61 -10.06 16 8 C 0.08 1.19 2.59 -67.71 -0.18 1.01 16 9 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 10 C -0.18 -2.13 9.16 37.16 0.34 -1.79 16 11 C -0.09 -1.73 4.83 -26.73 -0.13 -1.85 16 12 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 13 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 14 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 15 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 17 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.12 -1.28 9.69 -39.57 -0.38 -1.66 16 22 C -0.12 -1.24 10.02 -39.54 -0.40 -1.64 16 23 C 0.06 0.81 7.31 -39.30 -0.29 0.53 16 24 F -0.14 -1.91 17.11 2.25 0.04 -1.87 16 25 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 28 H 0.14 1.78 6.30 -52.48 -0.33 1.45 16 29 H 0.04 0.39 7.38 -51.93 -0.38 0.00 16 30 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 31 H 0.34 4.43 8.46 -39.29 -0.33 4.10 16 32 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.46 7.45 -51.93 -0.39 0.08 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.76 6.81 -51.93 -0.35 0.40 16 38 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -32.55 342.41 -7.63 -40.18 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.34 Total: 0.75 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.78 Total: -19.20 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.16 Total: -37.83 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.55 -7.63 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.848 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds