Wall clock time and date at job start Tue Mar 31 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 116.99946 * 2 1 4 4 C 1.38715 * 120.04303 * 0.02562 * 3 2 1 5 5 C 1.38341 * 119.92144 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.99822 * 180.02562 * 5 4 3 7 7 C 1.38515 * 120.00202 * 359.97438 * 5 4 3 8 8 C 1.38205 * 120.08789 * 0.04339 * 7 5 4 9 9 C 1.50701 * 119.96035 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46972 * 269.97649 * 9 8 7 11 11 C 1.46906 * 110.99579 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47700 * 34.99756 * 11 10 9 13 13 C 1.53000 * 109.46588 * 274.99341 * 11 10 9 14 14 C 1.53001 * 109.46680 * 155.00348 * 11 10 9 15 15 C 1.53005 * 109.46973 * 294.99056 * 14 11 10 16 16 C 1.50698 * 109.47276 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99528 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00365 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99591 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47457 * 60.00159 * 20 18 16 22 22 H 1.48498 * 109.47211 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47383 * 299.99978 * 20 18 16 24 24 C 1.38179 * 120.08042 * 359.95428 * 8 7 5 25 25 H 1.08997 * 109.47577 * 299.99601 * 1 2 3 26 26 H 1.09009 * 109.47095 * 59.99919 * 1 2 3 27 27 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.03900 * 359.70562 * 4 3 2 29 29 H 1.08005 * 119.95360 * 180.02562 * 7 5 4 30 30 H 1.08992 * 109.47304 * 29.97535 * 9 8 7 31 31 H 1.09006 * 109.46949 * 149.97749 * 9 8 7 32 32 H 1.00895 * 111.00227 * 56.04828 * 10 9 8 33 33 H 1.09001 * 109.46923 * 180.02562 * 13 11 10 34 34 H 1.08997 * 109.47868 * 300.00253 * 13 11 10 35 35 H 1.09009 * 109.47102 * 60.00965 * 13 11 10 36 36 H 1.08994 * 109.47748 * 54.99535 * 14 11 10 37 37 H 1.09002 * 109.46950 * 174.99536 * 14 11 10 38 38 H 1.08994 * 109.47275 * 300.00768 * 15 14 11 39 39 H 1.09002 * 109.46891 * 60.00443 * 15 14 11 40 40 H 0.97001 * 119.99654 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00368 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3748 0.0005 5 6 1.9220 3.6061 0.0011 6 9 1.1885 4.7407 0.0021 7 6 3.3054 3.6757 0.0016 8 6 4.0575 2.5162 0.0007 9 6 5.5624 2.5953 0.0007 10 7 6.0513 2.6215 -1.3843 11 6 7.5179 2.6979 -1.4234 12 1 7.9338 2.1290 -0.5919 13 6 7.9554 4.1597 -1.3108 14 6 8.0238 2.1146 -2.7443 15 6 7.6948 0.6214 -2.8016 16 6 8.1937 0.0466 -4.1022 17 1 8.6956 0.6827 -4.8164 18 6 8.0094 -1.2911 -4.3806 19 7 7.3977 -2.0654 -3.5111 20 14 8.6284 -2.0037 -5.9925 21 1 10.0988 -1.8176 -6.0837 22 1 8.3079 -3.4526 -6.0487 23 1 7.9700 -1.3072 -7.1269 24 6 3.4312 1.2845 0.0002 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2127 2.3198 -0.0038 29 1 3.7969 4.6374 0.0024 30 1 5.8785 3.5029 0.5148 31 1 5.9719 1.7254 0.5142 32 1 5.6354 3.3822 -1.9003 33 1 9.0435 4.2166 -1.3403 34 1 7.5396 4.7287 -2.1423 35 1 7.5949 4.5754 -0.3697 36 1 7.5396 2.6255 -3.5764 37 1 9.1031 2.2517 -2.8123 38 1 8.1791 0.1105 -1.9695 39 1 6.6156 0.4843 -2.7336 40 1 7.2684 -3.0066 -3.7068 41 1 4.0201 0.3792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:34 Heat of formation + Delta-G solvation = -74.190298 kcal Electronic energy + Delta-G solvation = -21511.014643 eV Core-core repulsion = 18112.095907 eV Total energy + Delta-G solvation = -3398.918736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.00454 -40.19484 -38.07746 -36.69379 -33.39697 -32.21006 -30.43889 -29.98118 -28.71262 -27.43230 -25.33990 -24.57335 -22.68749 -21.42705 -21.17554 -19.80003 -18.13732 -17.06040 -16.23575 -16.08383 -16.06272 -16.00996 -15.46842 -15.22671 -14.82258 -14.52553 -14.29919 -13.96262 -13.09246 -12.94020 -12.88915 -12.45615 -12.36220 -12.22525 -12.10520 -11.73224 -11.56338 -11.42527 -11.20029 -11.07599 -11.00511 -10.77308 -10.44092 -10.19014 -9.60510 -9.18168 -8.90244 -8.85971 -8.32671 -8.19562 -7.89290 -5.84786 -3.85774 1.06775 1.21729 3.09288 3.41014 3.45192 3.47717 3.49050 4.09906 4.50350 4.57210 4.71562 4.82545 4.88746 4.96770 5.01776 5.13845 5.29211 5.31028 5.35847 5.45400 5.50646 5.59871 5.67794 5.85743 5.93231 6.00752 6.09509 6.13746 6.27641 6.39947 6.45616 6.64614 6.68529 6.91068 7.24353 7.32200 7.46681 7.77550 7.88064 8.11635 8.27383 8.61374 9.22978 9.76568 11.26239 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.004131 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.503942 B = 6777.127961 C = 8258.461341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.156 3.844 4 C -0.250 4.250 5 C 0.132 3.868 6 F -0.141 7.141 7 C -0.187 4.187 8 C -0.008 4.008 9 C 0.097 3.903 10 N -0.665 5.665 11 C 0.084 3.916 12 H 0.074 0.926 13 C -0.181 4.181 14 C -0.098 4.098 15 C 0.029 3.971 16 C -0.519 4.519 17 H 0.050 0.950 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.132 4.132 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.007 0.993 39 H 0.033 0.967 40 H 0.258 0.742 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 10.687 10.635 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.110 3.890 4 C -0.270 4.270 5 C 0.113 3.887 6 F -0.120 7.120 7 C -0.206 4.206 8 C -0.009 4.009 9 C -0.032 4.032 10 N -0.295 5.295 11 C -0.025 4.025 12 H 0.092 0.908 13 C -0.240 4.240 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.558 4.558 17 H 0.068 0.932 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.067 9.654 10.592 18.735 hybrid contribution -0.037 0.834 -0.710 1.096 sum -12.104 10.488 9.882 18.819 Atomic orbital electron populations 1.23100 0.78346 1.04196 1.01320 1.86166 1.21412 1.26214 1.88211 1.18715 0.92083 0.83649 0.94512 1.21071 1.00869 0.91300 1.13772 1.17253 0.89066 0.81337 1.01033 1.91486 1.77410 1.49210 1.93849 1.20898 0.91619 0.99710 1.08397 1.19448 0.95817 0.91165 0.94468 1.20946 0.88959 1.01441 0.91816 1.60553 1.06872 1.51342 1.10751 1.21774 0.86351 0.93533 1.00891 0.90793 1.22548 1.02131 0.98700 1.00651 1.21630 0.98256 1.00336 0.93390 1.18997 0.98056 0.88016 0.95713 1.21312 1.36944 0.93962 1.03553 0.93213 1.24984 0.95527 0.97331 0.96509 1.69966 1.42774 1.05566 1.35085 0.86757 0.79201 0.77951 0.84624 1.20445 1.21412 1.20407 1.20501 0.91007 0.99155 1.04418 0.92672 0.92495 0.87979 0.84533 0.84976 0.94423 0.89432 0.84496 0.92161 0.92754 0.93708 0.93476 0.93469 0.97482 0.94841 0.93212 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.01 10.50 -19.41 -0.20 -4.21 16 3 C 0.16 2.10 6.69 -39.23 -0.26 1.84 16 4 C -0.25 -3.02 9.02 -39.37 -0.35 -3.38 16 5 C 0.13 1.66 7.30 -39.44 -0.29 1.37 16 6 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 7 C -0.19 -2.28 9.68 -39.49 -0.38 -2.67 16 8 C -0.01 -0.11 5.39 -104.65 -0.56 -0.67 16 9 C 0.10 1.29 5.61 -4.97 -0.03 1.26 16 10 N -0.66 -10.45 5.69 -107.99 -0.61 -11.07 16 11 C 0.08 1.36 2.59 -67.71 -0.18 1.19 16 12 H 0.07 1.24 7.80 -51.93 -0.40 0.83 16 13 C -0.18 -2.36 9.16 37.16 0.34 -2.01 16 14 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 15 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 16 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 20 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.13 -1.89 9.64 -39.42 -0.38 -2.27 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.06 0.44 7.66 -51.92 -0.40 0.04 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.14 1.34 6.30 -52.48 -0.33 1.01 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.04 0.43 7.38 -51.93 -0.38 0.05 16 31 H 0.09 1.20 8.00 -51.93 -0.42 0.79 16 32 H 0.34 4.92 8.46 -39.29 -0.33 4.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.04 0.51 7.45 -51.92 -0.39 0.12 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -31.91 346.20 -8.00 -39.91 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.37 Total: 0.94 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.78 Total: -19.46 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.12 Total: -37.85 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.20 Total: -4.21 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -8.00 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.279 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds