Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 116.99946 * 2 1 4 4 C 1.38715 * 120.04303 * 0.02562 * 3 2 1 5 5 C 1.38341 * 119.92144 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.99822 * 180.02562 * 5 4 3 7 7 C 1.38515 * 120.00202 * 359.97438 * 5 4 3 8 8 C 1.38205 * 120.08789 * 0.04339 * 7 5 4 9 9 C 1.50701 * 119.96035 * 179.97438 * 8 7 5 10 10 N 1.46902 * 109.46972 * 269.97649 * 9 8 7 11 11 C 1.46906 * 110.99579 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47700 * 34.99756 * 11 10 9 13 13 C 1.53000 * 109.46588 * 274.99341 * 11 10 9 14 14 C 1.53001 * 109.46680 * 155.00348 * 11 10 9 15 15 C 1.53005 * 109.46973 * 294.99056 * 14 11 10 16 16 C 1.50698 * 109.47276 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99528 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00365 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99591 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47457 * 60.00159 * 20 18 16 22 22 H 1.48498 * 109.47211 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47383 * 299.99978 * 20 18 16 24 24 C 1.38179 * 120.08042 * 359.95428 * 8 7 5 25 25 H 1.08997 * 109.47577 * 299.99601 * 1 2 3 26 26 H 1.09009 * 109.47095 * 59.99919 * 1 2 3 27 27 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.03900 * 359.70562 * 4 3 2 29 29 H 1.08005 * 119.95360 * 180.02562 * 7 5 4 30 30 H 1.08992 * 109.47304 * 29.97535 * 9 8 7 31 31 H 1.09006 * 109.46949 * 149.97749 * 9 8 7 32 32 H 1.00895 * 111.00227 * 56.04828 * 10 9 8 33 33 H 1.09001 * 109.46923 * 180.02562 * 13 11 10 34 34 H 1.08997 * 109.47868 * 300.00253 * 13 11 10 35 35 H 1.09009 * 109.47102 * 60.00965 * 13 11 10 36 36 H 1.08994 * 109.47748 * 54.99535 * 14 11 10 37 37 H 1.09002 * 109.46950 * 174.99536 * 14 11 10 38 38 H 1.08994 * 109.47275 * 300.00768 * 15 14 11 39 39 H 1.09002 * 109.46891 * 60.00443 * 15 14 11 40 40 H 0.97001 * 119.99654 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00368 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3748 0.0005 5 6 1.9220 3.6061 0.0011 6 9 1.1885 4.7407 0.0021 7 6 3.3054 3.6757 0.0016 8 6 4.0575 2.5162 0.0007 9 6 5.5624 2.5953 0.0007 10 7 6.0513 2.6215 -1.3843 11 6 7.5179 2.6979 -1.4234 12 1 7.9338 2.1290 -0.5919 13 6 7.9554 4.1597 -1.3108 14 6 8.0238 2.1146 -2.7443 15 6 7.6948 0.6214 -2.8016 16 6 8.1937 0.0466 -4.1022 17 1 8.6956 0.6827 -4.8164 18 6 8.0094 -1.2911 -4.3806 19 7 7.3977 -2.0654 -3.5111 20 14 8.6284 -2.0037 -5.9925 21 1 10.0988 -1.8176 -6.0837 22 1 8.3079 -3.4526 -6.0487 23 1 7.9700 -1.3072 -7.1269 24 6 3.4312 1.2845 0.0002 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2127 2.3198 -0.0038 29 1 3.7969 4.6374 0.0024 30 1 5.8785 3.5029 0.5148 31 1 5.9719 1.7254 0.5142 32 1 5.6354 3.3822 -1.9003 33 1 9.0435 4.2166 -1.3403 34 1 7.5396 4.7287 -2.1423 35 1 7.5949 4.5754 -0.3697 36 1 7.5396 2.6255 -3.5764 37 1 9.1031 2.2517 -2.8123 38 1 8.1791 0.1105 -1.9695 39 1 6.6156 0.4843 -2.7336 40 1 7.2684 -3.0066 -3.7068 41 1 4.0201 0.3792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = -93.614268 kcal Electronic energy + Delta-G solvation = -21511.856930 eV Core-core repulsion = 18112.095907 eV Total energy + Delta-G solvation = -3399.761023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.97938 -41.15956 -39.15727 -37.90897 -35.31599 -33.70373 -31.69329 -31.28173 -30.00402 -28.21900 -27.00827 -25.92230 -23.68273 -23.15048 -22.26342 -21.32670 -19.12615 -18.32489 -18.01147 -17.22892 -17.02811 -16.95397 -16.54465 -16.44220 -16.35773 -15.92046 -15.44722 -15.10325 -14.49090 -14.26450 -14.15211 -13.81330 -13.75469 -13.27148 -13.21441 -13.07577 -12.86284 -12.78271 -12.69381 -12.39434 -12.32035 -12.16307 -11.93182 -11.70474 -11.48864 -11.18132 -10.94102 -10.45335 -9.88977 -9.32408 -9.09350 -8.10931 -6.21230 0.05330 0.22257 1.40739 1.44147 1.51721 2.23821 2.45597 2.47325 3.11730 3.21254 3.43494 3.67796 3.92182 3.95620 4.07398 4.17327 4.25561 4.32216 4.35040 4.36113 4.51583 4.56175 4.69278 4.77600 4.82788 4.96047 4.97271 5.02761 5.08735 5.12572 5.14901 5.33568 5.44643 5.50791 5.62000 5.67255 5.92278 6.06686 6.26326 6.32612 6.37866 6.63352 6.98956 7.46659 9.00045 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.004131 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.503942 B = 6777.127961 C = 8258.461341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.148 3.852 4 C -0.245 4.245 5 C 0.128 3.872 6 F -0.139 7.139 7 C -0.181 4.181 8 C -0.011 4.011 9 C 0.103 3.897 10 N -0.688 5.688 11 C 0.091 3.909 12 H 0.065 0.935 13 C -0.169 4.169 14 C -0.088 4.088 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.055 0.945 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.959 3.041 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.344 0.656 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.050 0.950 38 H -0.023 1.023 39 H 0.003 0.997 40 H 0.260 0.740 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 12.397 10.235 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.102 3.898 4 C -0.264 4.264 5 C 0.109 3.891 6 F -0.117 7.117 7 C -0.201 4.201 8 C -0.012 4.012 9 C -0.025 4.025 10 N -0.319 5.319 11 C -0.018 4.018 12 H 0.083 0.917 13 C -0.228 4.228 14 C -0.126 4.126 15 C 0.001 3.999 16 C -0.582 4.582 17 H 0.073 0.927 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.177 4.177 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.069 0.931 38 H -0.004 1.004 39 H 0.022 0.978 40 H 0.069 0.931 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.430 11.384 10.196 19.699 hybrid contribution -0.003 0.255 -0.560 0.615 sum -12.433 11.639 9.637 19.568 Atomic orbital electron populations 1.23425 0.76037 1.05871 1.02558 1.86137 1.23929 1.26335 1.88213 1.18764 0.91870 0.84425 0.94699 1.21255 1.02012 0.90557 1.12589 1.17358 0.89302 0.81500 1.00965 1.91494 1.77349 1.49049 1.93825 1.21054 0.91592 1.00060 1.07346 1.19419 0.95811 0.91140 0.94830 1.20890 0.88934 1.02143 0.90546 1.60396 1.06663 1.52275 1.12613 1.21541 0.86809 0.95681 0.97815 0.91692 1.22396 1.02483 0.95732 1.02180 1.21459 0.98645 0.96399 0.96125 1.18828 0.95571 0.91803 0.93722 1.21804 1.37088 0.94646 1.04666 0.92706 1.25935 0.95579 0.97834 1.00448 1.70119 1.43925 1.05907 1.37317 0.85598 0.79098 0.77110 0.79804 1.19168 1.20941 1.19398 1.20526 0.91835 0.99017 1.06275 0.90917 0.91649 0.86272 0.82212 0.82790 0.91573 0.90823 0.83696 0.91671 0.92037 0.91444 0.93577 0.93115 1.00414 0.97821 0.93103 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.80 10.50 -92.39 -0.97 -9.77 16 3 C 0.15 4.04 6.69 22.50 0.15 4.19 16 4 C -0.24 -5.59 9.02 22.41 0.20 -5.39 16 5 C 0.13 2.99 7.30 22.36 0.16 3.15 16 6 F -0.14 -3.15 17.27 44.97 0.78 -2.38 16 7 C -0.18 -4.13 9.68 22.33 0.22 -3.91 16 8 C -0.01 -0.30 5.39 -19.89 -0.11 -0.40 16 9 C 0.10 2.69 5.61 85.56 0.48 3.17 16 10 N -0.69 -21.53 5.69 -495.56 -2.82 -24.35 16 11 C 0.09 2.91 2.59 44.91 0.12 3.03 16 12 H 0.06 2.18 7.80 -2.39 -0.02 2.17 16 13 C -0.17 -3.95 9.16 71.98 0.66 -3.29 16 14 C -0.09 -3.64 4.83 30.60 0.15 -3.50 16 15 C 0.04 2.07 4.86 29.85 0.15 2.21 16 16 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 17 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.94 13.29 21.45 0.28 -58.65 16 20 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.16 -4.73 9.64 22.37 0.22 -4.51 16 25 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 26 H 0.06 0.91 7.66 -2.38 -0.02 0.89 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.16 2.78 6.30 -2.91 -0.02 2.77 16 29 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.07 1.35 7.38 -2.39 -0.02 1.34 16 31 H 0.07 2.10 8.00 -2.38 -0.02 2.08 16 32 H 0.34 9.69 8.46 -89.70 -0.76 8.93 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 35 H 0.07 1.30 7.45 -2.38 -0.02 1.28 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 39 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -70.27 346.20 3.75 -66.52 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.26 Total: 16.25 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 4.20 Total: -35.42 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.54 Total: -83.01 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.97 Total: -9.77 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.27 3.75 -66.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.094 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds