Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99994 * 2 1 4 4 C 1.38708 * 120.04549 * 359.97438 * 3 2 1 5 5 C 1.38333 * 119.92426 * 180.02562 * 4 3 2 6 6 F 1.35107 * 120.00211 * 179.97438 * 5 4 3 7 7 C 1.38525 * 120.00285 * 359.72709 * 5 4 3 8 8 C 1.38199 * 120.08376 * 0.54656 * 7 5 4 9 9 C 1.50701 * 119.96096 * 179.72712 * 8 7 5 10 10 N 1.46901 * 109.46921 * 269.72555 * 9 8 7 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47279 * 325.00167 * 11 10 9 13 13 C 1.52995 * 109.46946 * 85.00144 * 11 10 9 14 14 C 1.53000 * 109.47281 * 205.00148 * 11 10 9 15 15 C 1.53001 * 109.46786 * 64.99922 * 14 11 10 16 16 C 1.50708 * 109.46907 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99767 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99999 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99897 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47326 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47118 * 120.00464 * 20 18 16 23 23 H 1.48500 * 109.47435 * 240.00244 * 20 18 16 24 24 C 1.38182 * 120.08135 * 359.45376 * 8 7 5 25 25 H 1.08998 * 109.47357 * 300.00720 * 1 2 3 26 26 H 1.09007 * 109.46633 * 60.00364 * 1 2 3 27 27 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.08009 * 120.03582 * 359.97438 * 4 3 2 29 29 H 1.08006 * 119.95585 * 180.27010 * 7 5 4 30 30 H 1.09002 * 109.47060 * 29.72736 * 9 8 7 31 31 H 1.09001 * 109.47380 * 149.72823 * 9 8 7 32 32 H 1.00899 * 111.00283 * 303.95218 * 10 9 8 33 33 H 1.09000 * 109.47395 * 299.99746 * 13 11 10 34 34 H 1.09003 * 109.47112 * 59.99921 * 13 11 10 35 35 H 1.09001 * 109.47056 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47600 * 185.00056 * 14 11 10 37 37 H 1.09003 * 109.47172 * 305.00516 * 14 11 10 38 38 H 1.09001 * 109.47460 * 300.00033 * 15 14 11 39 39 H 1.08999 * 109.47250 * 60.00412 * 15 14 11 40 40 H 0.97000 * 119.99909 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00191 * 180.25135 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3748 -0.0005 5 6 1.9221 3.6060 -0.0011 6 9 1.1887 4.7407 -0.0021 7 6 3.3056 3.6757 0.0046 8 6 4.0576 2.5162 -0.0005 9 6 5.5625 2.5952 -0.0005 10 7 6.0515 2.6203 -1.3855 11 6 7.5180 2.6979 -1.4247 12 1 7.8720 3.3074 -0.5932 13 6 8.1064 1.2901 -1.3118 14 6 7.9602 3.3310 -2.7455 15 6 7.4764 4.7814 -2.8029 16 6 7.9113 5.4048 -4.1043 17 1 8.4759 4.8244 -4.8189 18 6 7.5876 6.7157 -4.3828 19 7 6.8996 7.4223 -3.5127 20 14 8.1273 7.4887 -5.9954 21 1 8.8830 6.4907 -6.7942 22 1 6.9315 7.9294 -6.7578 23 1 8.9960 8.6603 -5.7165 24 6 3.4313 1.2845 0.0000 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.2128 2.3198 -0.0014 29 1 3.7971 4.6374 0.0086 30 1 5.8787 3.5033 0.5130 31 1 5.9721 1.7258 0.5137 32 1 5.7176 1.8201 -1.9015 33 1 7.7914 0.8391 -0.3708 34 1 7.7524 0.6806 -2.1432 35 1 9.1945 1.3476 -1.3413 36 1 9.0478 3.3078 -2.8135 37 1 7.5321 2.7720 -3.5776 38 1 6.3887 4.8046 -2.7350 39 1 7.9044 5.3404 -1.9709 40 1 6.6715 8.3445 -3.7089 41 1 4.0203 0.3792 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = -74.473963 kcal Electronic energy + Delta-G solvation = -21480.824959 eV Core-core repulsion = 18081.893922 eV Total energy + Delta-G solvation = -3398.931037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.87727 -40.25697 -38.10290 -36.71012 -33.40706 -32.21729 -30.44774 -30.01218 -28.70588 -27.50310 -25.34522 -24.60113 -22.67523 -21.43404 -21.17212 -19.81046 -18.15611 -17.09613 -16.25122 -16.11835 -16.08491 -15.91315 -15.43009 -15.23353 -14.86892 -14.54839 -14.30453 -13.84751 -13.25579 -12.91707 -12.84073 -12.54298 -12.37213 -12.24388 -12.11198 -11.71404 -11.51883 -11.50705 -11.20925 -11.08421 -11.02274 -10.81027 -10.40171 -10.18955 -9.61713 -9.19196 -8.90824 -8.85788 -8.33458 -8.20845 -7.89585 -5.85781 -3.86616 1.04219 1.24447 2.98043 3.38322 3.45619 3.47648 3.49618 4.16265 4.49784 4.56696 4.71368 4.76351 4.86836 4.90779 4.97831 5.13893 5.20361 5.33670 5.35444 5.49888 5.50260 5.55389 5.68098 5.74437 5.96917 6.00118 6.08601 6.13476 6.27902 6.39980 6.50623 6.60731 6.68266 6.90772 7.14742 7.31836 7.46437 7.77679 7.87888 8.10858 8.26328 8.60689 9.22578 9.75951 11.25308 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003834 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.007384 B = 7302.002840 C = 8390.425183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.151 3.849 4 C -0.250 4.250 5 C 0.138 3.862 6 F -0.136 7.136 7 C -0.161 4.161 8 C -0.007 4.007 9 C 0.097 3.903 10 N -0.665 5.665 11 C 0.084 3.916 12 H 0.074 0.926 13 C -0.181 4.181 14 C -0.098 4.098 15 C 0.029 3.971 16 C -0.517 4.517 17 H 0.051 0.949 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.158 4.158 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.337 0.663 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.033 0.967 39 H 0.007 0.993 40 H 0.257 0.743 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 -15.191 10.634 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.106 3.894 4 C -0.270 4.270 5 C 0.119 3.881 6 F -0.115 7.115 7 C -0.180 4.180 8 C -0.008 4.008 9 C -0.032 4.032 10 N -0.296 5.296 11 C -0.026 4.026 12 H 0.092 0.908 13 C -0.240 4.240 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.556 4.556 17 H 0.069 0.931 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.156 0.844 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.767 -14.485 10.588 20.925 hybrid contribution -0.012 0.001 -0.693 0.693 sum -10.779 -14.484 9.895 20.589 Atomic orbital electron populations 1.23088 0.78276 1.04004 1.01581 1.86089 1.21504 1.26454 1.88626 1.18588 0.91904 0.83568 0.95388 1.21068 1.00851 0.91320 1.13738 1.17362 0.89268 0.81407 1.00090 1.91515 1.77250 1.49099 1.93616 1.21081 0.91360 1.00605 1.04983 1.19455 0.95919 0.91087 0.94358 1.20947 0.88756 1.01636 0.91828 1.60550 1.10143 1.48119 1.10758 1.21772 0.85722 0.94190 1.00869 0.90823 1.22545 1.01950 0.98842 1.00686 1.21629 0.98634 0.99941 0.93408 1.19008 0.97741 0.88356 0.95739 1.21386 1.34108 0.96614 1.03462 0.93089 1.24996 0.95458 0.97465 0.96548 1.69985 1.39450 1.09004 1.34980 0.86638 0.78320 0.79256 0.84358 1.19891 1.21151 1.21199 1.20330 0.91139 0.98385 1.07876 0.92568 0.92424 0.88129 0.84536 0.83806 0.89509 0.94336 0.84438 0.93674 0.92731 0.92171 0.93455 0.93458 0.94876 0.97489 0.93326 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.37 10.50 -19.43 -0.20 -3.58 16 3 C 0.15 1.81 6.69 -39.23 -0.26 1.55 16 4 C -0.25 -3.01 9.01 -39.37 -0.35 -3.37 16 5 C 0.14 1.93 7.30 -39.44 -0.29 1.64 16 6 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 7 C -0.16 -2.32 9.67 -39.49 -0.38 -2.71 16 8 C -0.01 -0.10 5.39 -104.66 -0.56 -0.66 16 9 C 0.10 1.28 5.61 -4.97 -0.03 1.26 16 10 N -0.67 -10.45 5.69 -107.99 -0.61 -11.06 16 11 C 0.08 1.36 2.59 -67.71 -0.18 1.19 16 12 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 13 C -0.18 -2.35 9.16 37.16 0.34 -2.01 16 14 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 15 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 20 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C -0.16 -1.91 9.64 -39.42 -0.38 -2.29 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 26 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.14 1.34 6.30 -52.48 -0.33 1.00 16 29 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.09 1.19 8.00 -51.93 -0.42 0.78 16 31 H 0.04 0.44 7.38 -51.93 -0.38 0.05 16 32 H 0.34 4.91 8.47 -39.29 -0.33 4.58 16 33 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 34 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.94 7.75 -51.93 -0.40 0.53 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -32.08 346.20 -8.00 -40.08 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.37 Total: 0.51 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.78 Total: -19.56 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.12 Total: -37.93 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.20 Total: -3.58 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.08 -8.00 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.390 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds