Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47223 * 2 1 4 4 C 1.53003 * 109.46930 * 239.99904 * 2 1 3 5 5 C 1.52996 * 109.46802 * 175.00035 * 4 2 1 6 6 C 1.50705 * 109.46884 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99812 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00505 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00018 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47085 * 89.99823 * 10 8 6 12 12 H 1.48497 * 109.47339 * 209.99768 * 10 8 6 13 13 H 1.48497 * 109.46897 * 330.00293 * 10 8 6 14 14 N 1.46903 * 109.46959 * 120.00265 * 2 1 3 15 15 C 1.46899 * 110.99701 * 274.99964 * 14 2 1 16 16 H 1.09002 * 109.47432 * 34.99939 * 15 14 2 17 17 C 1.52999 * 109.47123 * 274.99985 * 15 14 2 18 18 O 1.42903 * 109.47256 * 295.00582 * 17 15 14 19 19 C 1.50705 * 109.46995 * 155.00278 * 15 14 2 20 20 C 1.38265 * 119.98793 * 39.72210 * 19 15 14 21 21 C 1.38224 * 120.05090 * 179.72859 * 20 19 15 22 22 C 1.38218 * 120.02197 * 0.54674 * 21 20 19 23 23 C 1.38438 * 119.97786 * 359.72749 * 22 21 20 24 24 F 1.35097 * 120.02493 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98568 * 219.99969 * 19 15 14 26 26 H 1.09003 * 109.47059 * 300.00004 * 1 2 3 27 27 H 1.08997 * 109.47170 * 59.99921 * 1 2 3 28 28 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47215 * 295.00287 * 4 2 1 30 30 H 1.09008 * 109.46803 * 55.00203 * 4 2 1 31 31 H 1.09000 * 109.47110 * 300.00043 * 5 4 2 32 32 H 1.08994 * 109.47424 * 60.00386 * 5 4 2 33 33 H 0.96995 * 120.00199 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99645 * 38.94812 * 14 2 1 35 35 H 1.08997 * 109.47286 * 175.00142 * 17 15 14 36 36 H 1.09008 * 109.47201 * 54.99922 * 17 15 14 37 37 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 38 38 H 1.08006 * 119.97506 * 359.97438 * 20 19 15 39 39 H 1.07996 * 119.98789 * 180.27443 * 21 20 19 40 40 H 1.08005 * 120.00866 * 179.70756 * 22 21 20 41 41 H 1.08007 * 120.01190 * 0.02562 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3243 -2.5438 7 1 3.3687 -1.8047 -3.2129 8 6 5.4185 -1.3615 -2.8150 9 7 6.2692 -0.7769 -1.9999 10 14 6.0412 -2.2421 -4.3402 11 1 6.0918 -1.2878 -5.4769 12 1 7.4022 -2.7770 -4.0820 13 1 5.1245 -3.3616 -4.6743 14 7 2.0197 -0.6926 1.1994 15 6 2.0824 0.2225 2.3469 16 1 1.2576 0.9329 2.2907 17 6 3.4111 0.9808 2.3224 18 8 4.4881 0.0610 2.5129 19 6 1.9786 -0.5678 3.6259 20 6 2.6284 -1.7826 3.7423 21 6 2.5387 -2.5059 4.9168 22 6 1.7898 -2.0206 5.9723 23 6 1.1340 -0.8070 5.8549 24 9 0.4022 -0.3316 6.8861 25 6 1.2293 -0.0807 4.6797 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8531 0.4369 -1.3573 32 1 3.9994 -1.0728 -0.4260 33 1 7.2198 -0.8027 -2.1909 34 1 1.4495 -1.4979 1.4100 35 1 3.4210 1.7224 3.1211 36 1 3.5263 1.4810 1.3607 37 1 5.3628 0.4733 2.5091 38 1 3.2099 -2.1649 2.9163 39 1 3.0503 -3.4526 5.0082 40 1 1.7159 -2.5882 6.8882 41 1 0.7178 0.8660 4.5868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = -82.258473 kcal Electronic energy + Delta-G solvation = -22186.118341 eV Core-core repulsion = 18786.849742 eV Total energy + Delta-G solvation = -3399.268599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.92358 -39.57894 -37.39571 -35.81905 -33.50558 -32.39703 -30.70208 -29.87750 -28.83731 -27.15146 -25.04058 -23.42344 -22.69423 -21.40742 -20.31394 -19.75144 -17.40161 -17.12966 -16.14310 -16.07941 -16.04471 -15.64570 -15.38704 -14.83766 -14.36983 -14.06771 -13.77992 -13.59273 -13.24633 -13.06446 -12.76569 -12.49621 -12.33060 -12.05748 -11.89890 -11.62944 -11.37691 -11.26493 -11.16354 -10.84110 -10.61704 -10.42791 -10.19542 -9.65993 -9.47452 -9.18511 -8.99519 -8.85673 -8.59602 -8.20109 -7.89095 -5.85780 -3.86210 1.17107 1.22952 3.38155 3.44499 3.48000 3.61221 4.10203 4.43639 4.55057 4.56272 4.73083 4.82191 5.02825 5.32539 5.32983 5.37564 5.41859 5.49830 5.55331 5.58714 5.67209 5.74360 5.78714 5.97038 6.06233 6.07667 6.15987 6.26453 6.40302 6.44701 6.57606 6.71443 6.90448 6.94572 7.33297 7.48552 7.77735 7.87826 8.11559 8.12618 8.30952 8.61231 9.23041 9.75964 11.25003 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.003932 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.248082 B = 7119.633865 C = 7580.100688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 H 0.071 0.929 4 C -0.097 4.097 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.653 5.653 15 C 0.128 3.872 16 H 0.059 0.941 17 C 0.095 3.905 18 O -0.547 6.547 19 C -0.052 4.052 20 C -0.082 4.082 21 C -0.098 4.098 22 C -0.158 4.158 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.154 4.154 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.039 0.961 33 H 0.257 0.743 34 H 0.338 0.662 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.374 0.626 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 1.994 14.654 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.284 5.284 15 C 0.018 3.982 16 H 0.077 0.923 17 C 0.016 3.984 18 O -0.351 6.351 19 C -0.052 4.052 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.177 4.177 23 C 0.066 3.934 24 F -0.125 7.125 25 C -0.173 4.173 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.394 1.694 14.572 17.420 hybrid contribution -0.242 0.246 -0.458 0.573 sum -9.636 1.940 14.115 17.200 Atomic orbital electron populations 1.22563 0.98644 1.01658 1.01218 1.21818 0.90805 0.98356 0.91722 0.91086 1.21618 1.00800 0.98345 0.92767 1.18988 0.88109 0.96260 0.97232 1.21360 0.91817 1.33981 1.08486 0.93264 1.24968 0.97137 0.95811 0.96380 1.69975 1.02035 1.44520 1.36744 0.86722 0.78144 0.80028 0.83810 1.20948 1.21365 1.20056 1.60605 1.57632 1.08296 1.01855 1.20539 0.96103 0.93782 0.87785 0.92311 1.22041 0.87032 0.90383 0.98926 1.86547 1.16486 1.36316 1.95787 1.19701 0.95631 0.95224 0.94678 1.21327 0.97024 0.93500 0.98128 1.21105 0.97768 1.00109 0.92638 1.21117 1.00146 0.95584 1.00817 1.17590 0.95836 0.94696 0.85255 1.91469 1.75390 1.88351 1.57303 1.20983 1.02502 1.01060 0.92740 0.93826 0.92193 0.92694 0.93469 0.93663 0.97830 0.94250 0.93380 0.84300 0.94761 0.92844 0.78019 0.83407 0.85101 0.85287 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.15 37.16 0.34 -2.03 16 2 C 0.08 1.32 2.38 -67.71 -0.16 1.16 16 3 H 0.07 1.18 7.10 -51.93 -0.37 0.81 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 10 Si 0.88 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.65 -10.09 4.84 -100.95 -0.49 -10.58 16 15 C 0.13 1.72 2.46 -68.86 -0.17 1.55 16 16 H 0.06 0.72 6.97 -51.93 -0.36 0.35 16 17 C 0.10 1.35 6.77 37.16 0.25 1.60 16 18 O -0.55 -8.67 12.06 -35.23 -0.43 -9.10 16 19 C -0.05 -0.67 4.59 -104.63 -0.48 -1.15 16 20 C -0.08 -1.08 8.00 -39.58 -0.32 -1.39 16 21 C -0.10 -1.12 10.04 -39.59 -0.40 -1.52 16 22 C -0.16 -1.76 10.03 -39.51 -0.40 -2.16 16 23 C 0.09 1.04 7.30 -39.42 -0.29 0.76 16 24 F -0.15 -1.84 17.27 2.25 0.04 -1.80 16 25 C -0.15 -1.85 9.65 -39.52 -0.38 -2.23 16 26 H 0.04 0.51 7.43 -51.93 -0.39 0.12 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.04 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.34 4.93 7.72 -39.29 -0.30 4.63 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.83 7.38 -51.92 -0.38 0.45 16 37 H 0.37 4.83 9.12 45.56 0.42 5.24 16 38 H 0.15 2.23 7.48 -52.48 -0.39 1.83 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.13 1.35 8.04 -52.48 -0.42 0.92 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -31.44 342.93 -8.19 -39.63 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.53 Total: 6.35 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.67 Total: -20.43 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.25 Total: -36.76 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.43 Total: -9.10 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.44 -8.19 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.627 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds