Wall clock time and date at job start Tue Mar 31 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.47304 * 2 1 4 4 C 1.53007 * 109.47221 * 120.00062 * 2 1 3 5 5 C 1.52996 * 109.47111 * 185.00183 * 4 2 1 6 6 C 1.50710 * 109.46967 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99548 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00180 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47318 * 89.99910 * 10 8 6 12 12 H 1.48505 * 109.47251 * 209.99658 * 10 8 6 13 13 H 1.48498 * 109.47088 * 329.99798 * 10 8 6 14 14 N 1.46903 * 109.47675 * 240.00137 * 2 1 3 15 15 C 1.46901 * 110.99880 * 84.99764 * 14 2 1 16 16 H 1.09002 * 109.47401 * 325.00504 * 15 14 2 17 17 C 1.53000 * 109.46769 * 85.00797 * 15 14 2 18 18 O 1.42899 * 109.47405 * 64.99669 * 17 15 14 19 19 C 1.50699 * 109.47121 * 205.00533 * 15 14 2 20 20 C 1.38265 * 119.99065 * 140.00474 * 19 15 14 21 21 C 1.38216 * 120.05535 * 180.02562 * 20 19 15 22 22 C 1.38222 * 120.02393 * 359.97438 * 21 20 19 23 23 C 1.38434 * 119.97604 * 0.02562 * 22 21 20 24 24 F 1.35105 * 120.02636 * 180.02562 * 23 22 21 25 25 C 1.38180 * 119.98630 * 319.73154 * 19 15 14 26 26 H 1.09002 * 109.47159 * 59.99471 * 1 2 3 27 27 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47193 * 300.00374 * 1 2 3 29 29 H 1.08996 * 109.46663 * 304.99986 * 4 2 1 30 30 H 1.08999 * 109.46708 * 64.99942 * 4 2 1 31 31 H 1.08996 * 109.47196 * 299.99476 * 5 4 2 32 32 H 1.08999 * 109.47531 * 60.00263 * 5 4 2 33 33 H 0.97001 * 119.99984 * 179.97438 * 9 8 6 34 34 H 1.00892 * 111.00423 * 208.95934 * 14 2 1 35 35 H 1.09002 * 109.46642 * 184.99944 * 17 15 14 36 36 H 1.09002 * 109.47069 * 304.99474 * 17 15 14 37 37 H 0.96699 * 114.00112 * 180.02562 * 18 17 15 38 38 H 1.08005 * 119.96856 * 0.02562 * 20 19 15 39 39 H 1.07998 * 119.98718 * 180.02562 * 21 20 19 40 40 H 1.08008 * 120.01123 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.01284 * 359.97438 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5439 7 1 3.3686 -1.8047 3.2130 8 6 5.4183 -1.3605 2.8157 9 7 6.2689 -0.7750 2.0012 10 14 6.0409 -2.2412 4.3409 11 1 6.3215 -3.6619 4.0123 12 1 7.2870 -1.5877 4.8158 13 1 5.0094 -2.1740 5.4070 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2227 -2.3469 16 1 1.2576 0.9330 -2.2907 17 6 3.4112 0.9809 -2.3223 18 8 4.4881 0.0612 -2.5128 19 6 1.9787 -0.5675 -3.6259 20 6 1.2290 -0.0801 -4.6804 21 6 1.1324 -0.8040 -5.8539 22 6 1.7858 -2.0160 -5.9746 23 6 2.5367 -2.5051 -4.9195 24 9 3.1762 -3.6894 -5.0366 25 6 2.6373 -1.7762 -3.7463 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -0.2617 2.1369 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 7.2195 -0.8002 2.1926 34 1 2.9173 -1.1205 -1.0287 35 1 3.4210 1.7225 -3.1210 36 1 3.5263 1.4811 -1.3606 37 1 5.3629 0.4734 -2.5081 38 1 0.7185 0.8671 -4.5871 39 1 0.5469 -0.4220 -6.6771 40 1 1.7105 -2.5813 -6.8919 41 1 3.2268 -2.1545 -2.9242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:40 Heat of formation + Delta-G solvation = -86.835834 kcal Electronic energy + Delta-G solvation = -22324.426548 eV Core-core repulsion = 18924.959460 eV Total energy + Delta-G solvation = -3399.467088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.69590 -39.51770 -37.54232 -35.93478 -33.53034 -32.42228 -30.44875 -30.00467 -29.06312 -27.09377 -25.06404 -23.49039 -22.55816 -21.46420 -20.43219 -19.56406 -17.52723 -16.91114 -16.33247 -16.15366 -16.04579 -15.45756 -15.26559 -14.97953 -14.51960 -14.38524 -13.86519 -13.51289 -13.23946 -12.83978 -12.53929 -12.43347 -12.26716 -12.03208 -11.83367 -11.67896 -11.45138 -11.29870 -11.04816 -10.90692 -10.87078 -10.47721 -10.28102 -9.86744 -9.70300 -9.26824 -9.03510 -8.77441 -8.57858 -8.34715 -7.99822 -6.00173 -4.01742 1.25739 1.38070 3.32459 3.38717 3.41946 3.68142 4.29280 4.36931 4.46479 4.66356 4.76699 4.90413 5.12462 5.20094 5.29794 5.36103 5.45262 5.52259 5.52983 5.61355 5.66920 5.77220 5.89589 6.03855 6.11835 6.15989 6.30274 6.34355 6.34798 6.49754 6.52127 6.69616 6.89748 7.03033 7.08491 7.47176 7.63324 7.80253 7.84525 7.92739 8.00621 8.43162 9.04665 9.62323 11.10838 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.004408 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.963867 B = 6350.765917 C = 6968.865599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.677 5.677 15 C 0.126 3.874 16 H 0.095 0.905 17 C 0.050 3.950 18 O -0.560 6.560 19 C -0.027 4.027 20 C -0.133 4.133 21 C -0.099 4.099 22 C -0.164 4.164 23 C 0.090 3.910 24 F -0.143 7.143 25 C -0.104 4.104 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.010 0.990 33 H 0.259 0.741 34 H 0.364 0.636 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.382 0.618 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 4.222 -14.712 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.312 5.312 15 C 0.015 3.985 16 H 0.113 0.887 17 C -0.030 4.030 18 O -0.365 6.365 19 C -0.028 4.028 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.183 4.183 23 C 0.071 3.929 24 F -0.122 7.122 25 C -0.123 4.123 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.229 0.771 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.332 3.523 -14.904 18.474 hybrid contribution 1.839 0.327 1.043 2.139 sum -8.493 3.850 -13.861 16.705 Atomic orbital electron populations 1.21814 0.95714 1.01864 1.00098 1.21634 0.94443 0.96108 0.90600 0.94460 1.21838 0.99826 0.99505 0.94162 1.19115 0.88634 0.96672 0.97089 1.21238 0.91953 1.34233 1.08340 0.92760 1.24997 0.97076 0.95584 0.96650 1.69958 1.02271 1.44104 1.37013 0.86625 0.78262 0.79861 0.83438 1.20643 1.21311 1.19936 1.60674 1.35714 1.31163 1.03697 1.20616 0.95151 0.93118 0.89600 0.88694 1.22815 0.88560 0.91861 0.99758 1.86452 1.17212 1.36918 1.95947 1.19520 0.94693 0.94002 0.94567 1.21023 1.00318 1.00458 0.93369 1.20826 0.99103 0.94066 0.97735 1.21045 1.00452 0.98196 0.98591 1.17781 0.96396 0.82936 0.95769 1.91487 1.79985 1.44263 1.96475 1.21013 1.00002 0.94731 0.96564 0.93844 0.92280 0.92983 0.92743 0.92433 0.96231 0.97208 0.93132 0.81193 0.93928 0.92764 0.77108 0.85897 0.85539 0.85412 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.40 37.15 0.35 -1.58 16 2 C 0.08 1.36 2.44 -67.71 -0.17 1.19 16 3 H 0.04 0.62 7.10 -51.92 -0.37 0.26 16 4 C -0.12 -2.34 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.68 -11.15 5.52 -100.95 -0.56 -11.71 16 15 C 0.13 1.74 2.46 -68.86 -0.17 1.57 16 16 H 0.10 1.16 6.97 -51.93 -0.36 0.79 16 17 C 0.05 0.68 6.68 37.16 0.25 0.93 16 18 O -0.56 -8.52 11.43 -35.23 -0.40 -8.92 16 19 C -0.03 -0.37 4.83 -104.63 -0.51 -0.88 16 20 C -0.13 -1.51 9.67 -39.58 -0.38 -1.89 16 21 C -0.10 -1.04 10.04 -39.60 -0.40 -1.44 16 22 C -0.16 -1.95 10.03 -39.51 -0.40 -2.34 16 23 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 24 F -0.14 -2.22 17.27 2.25 0.04 -2.19 16 25 C -0.10 -1.60 8.29 -39.51 -0.33 -1.92 16 26 H 0.04 0.54 7.43 -51.93 -0.39 0.16 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.52 6.43 -51.93 -0.33 0.18 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.36 6.96 5.03 -39.30 -0.20 6.76 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.80 7.38 -51.93 -0.38 0.42 16 37 H 0.38 4.63 9.12 45.56 0.42 5.04 16 38 H 0.12 1.10 8.04 -52.48 -0.42 0.67 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.14 2.41 6.99 -52.49 -0.37 2.04 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -30.63 339.13 -8.13 -38.76 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.33 Total: 8.67 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.71 Total: -20.75 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.18 Total: -37.36 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.40 Total: -8.92 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.63 -8.13 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.074 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds