Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47222 * 2 1 4 4 C 1.52995 * 109.46845 * 240.00057 * 2 1 3 5 5 C 1.53003 * 109.47343 * 174.33028 * 4 2 1 6 6 C 1.50697 * 109.47541 * 181.65121 * 5 4 2 7 7 H 1.08001 * 119.99560 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00012 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00111 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00106 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47181 * 90.00338 * 10 8 6 12 12 H 1.48494 * 109.47273 * 210.00371 * 10 8 6 13 13 H 1.48504 * 109.47046 * 330.00608 * 10 8 6 14 14 N 1.46900 * 109.47098 * 120.00010 * 2 1 3 15 15 C 1.46892 * 110.99870 * 227.20650 * 14 2 1 16 16 H 1.08997 * 109.47839 * 325.92264 * 15 14 2 17 17 C 1.53002 * 109.47044 * 85.92652 * 15 14 2 18 18 O 1.42907 * 109.47233 * 64.65334 * 17 15 14 19 19 C 1.50702 * 109.46862 * 205.91982 * 15 14 2 20 20 C 1.38258 * 119.99286 * 319.97993 * 19 15 14 21 21 C 1.38227 * 120.05705 * 179.97438 * 20 19 15 22 22 C 1.38216 * 120.02200 * 0.02562 * 21 20 19 23 23 C 1.38446 * 119.97420 * 359.74980 * 22 21 20 24 24 F 1.35103 * 120.02499 * 180.27079 * 23 22 21 25 25 C 1.38182 * 119.98271 * 140.00324 * 19 15 14 26 26 H 1.09007 * 109.46890 * 304.85689 * 1 2 3 27 27 H 1.08994 * 109.46965 * 64.85695 * 1 2 3 28 28 H 1.08998 * 109.47011 * 184.85555 * 1 2 3 29 29 H 1.09006 * 109.47371 * 294.33689 * 4 2 1 30 30 H 1.09007 * 109.47170 * 54.33507 * 4 2 1 31 31 H 1.09001 * 109.47125 * 301.65491 * 5 4 2 32 32 H 1.09003 * 109.46411 * 61.65066 * 5 4 2 33 33 H 0.96999 * 120.00076 * 179.97438 * 9 8 6 34 34 H 1.00910 * 110.99461 * 103.25344 * 14 2 1 35 35 H 1.09000 * 109.47120 * 184.65312 * 17 15 14 36 36 H 1.09002 * 109.47153 * 304.65569 * 17 15 14 37 37 H 0.96701 * 113.99680 * 180.02562 * 18 17 15 38 38 H 1.08003 * 119.97137 * 0.02562 * 20 19 15 39 39 H 1.07991 * 119.98907 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.01499 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.01316 * 0.02562 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5634 -0.5990 -1.3226 6 6 4.0618 -1.2745 -2.5741 7 1 3.3620 -1.7436 -3.2498 8 6 5.4113 -1.2936 -2.8565 9 7 5.8464 -1.8835 -3.9484 10 14 6.6215 -0.4815 -1.6881 11 1 7.0722 -1.4705 -0.6761 12 1 7.7939 0.0121 -2.4542 13 1 5.9605 0.6594 -1.0049 14 7 2.0197 -0.6925 1.1994 15 6 3.0736 0.0861 1.8634 16 1 3.6631 0.6134 1.1135 17 6 2.4356 1.0996 2.8157 18 8 1.7524 0.4059 3.8617 19 6 3.9680 -0.8424 2.6439 20 6 3.4211 -1.8991 3.3479 21 6 4.2403 -2.7519 4.0638 22 6 5.6073 -2.5486 4.0769 23 6 6.1566 -1.4935 3.3685 24 9 7.4932 -1.2971 3.3762 25 6 5.3344 -0.6368 2.6559 26 1 -0.3633 0.5874 0.8433 27 1 -0.3633 0.4366 -0.9302 28 1 -0.3633 -1.0240 0.0870 29 1 1.7618 -1.7740 -1.2000 30 1 1.5961 -0.2693 -2.1363 31 1 3.8429 0.4543 -1.3423 32 1 4.0085 -1.0768 -0.4499 33 1 6.7957 -1.8966 -4.1472 34 1 2.3439 -1.6211 0.9738 35 1 3.2118 1.7324 3.2460 36 1 1.7259 1.7180 2.2660 37 1 1.3227 0.9873 4.5039 38 1 2.3530 -2.0590 3.3379 39 1 3.8120 -3.5772 4.6130 40 1 6.2473 -3.2152 4.6359 41 1 5.7613 0.1892 2.1065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -82.081055 kcal Electronic energy + Delta-G solvation = -22756.928281 eV Core-core repulsion = 19357.667376 eV Total energy + Delta-G solvation = -3399.260905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.75283 -39.58745 -37.50517 -36.21557 -33.45434 -32.52912 -30.69216 -30.10814 -29.18548 -27.40639 -25.18829 -23.42520 -22.63880 -21.21174 -20.32702 -19.95873 -17.45801 -17.33008 -16.75560 -16.09385 -16.00957 -15.54123 -15.39172 -14.91382 -14.36113 -14.01650 -13.91509 -13.60818 -13.29350 -13.01515 -12.97275 -12.70469 -12.46253 -12.23605 -11.91040 -11.71409 -11.50941 -11.38184 -11.33786 -11.00938 -10.67901 -10.42001 -10.06062 -9.89838 -9.83324 -9.62897 -9.23975 -8.88463 -8.57183 -8.51015 -8.08077 -6.07695 -4.05770 1.26686 1.33168 3.27815 3.34321 3.36076 3.68644 4.16412 4.37945 4.41352 4.44928 4.70481 4.92857 5.08939 5.22804 5.25871 5.34197 5.40806 5.47111 5.50164 5.53230 5.62900 5.77374 5.85237 5.91113 6.09937 6.18269 6.20903 6.22874 6.32951 6.40728 6.44567 6.60330 6.66835 6.82489 7.01363 7.21546 7.22314 7.44332 7.66721 7.71946 7.76251 8.50569 8.97611 9.55070 11.05824 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.008031 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.488971 B = 3485.540759 C = 5292.909830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.062 0.938 4 C -0.127 4.127 5 C -0.013 4.013 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.267 1.267 14 N -0.666 5.666 15 C 0.124 3.876 16 H 0.073 0.927 17 C 0.095 3.905 18 O -0.552 6.552 19 C -0.052 4.052 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.156 4.156 23 C 0.091 3.909 24 F -0.144 7.144 25 C -0.149 4.149 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.349 0.651 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.368 0.632 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 4.221 17.857 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.034 4.034 3 H 0.080 0.920 4 C -0.165 4.165 5 C -0.050 4.050 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.192 1.192 14 N -0.298 5.298 15 C 0.014 3.986 16 H 0.090 0.910 17 C 0.017 3.983 18 O -0.356 6.356 19 C -0.053 4.053 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.175 4.175 23 C 0.072 3.928 24 F -0.122 7.122 25 C -0.168 4.168 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.213 0.787 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.661 3.905 17.807 19.409 hybrid contribution 1.782 0.811 0.047 1.958 sum -4.879 4.716 17.854 19.100 Atomic orbital electron populations 1.21722 0.95098 1.01734 1.00312 1.21802 0.95116 0.97342 0.89141 0.92005 1.22099 0.98404 0.99813 0.96193 1.19602 0.91780 0.96367 0.97298 1.21121 0.93006 1.35589 1.06068 0.91030 1.25015 0.98375 0.94878 0.95008 1.69907 1.14776 1.44117 1.25300 0.86873 0.81037 0.80491 0.81512 1.19993 1.21323 1.19209 1.60765 1.36341 1.05830 1.26895 1.20635 0.90495 0.93371 0.94063 0.90974 1.22134 0.94640 0.92957 0.88613 1.86595 1.72570 1.36680 1.39725 1.19623 0.92058 0.96204 0.97383 1.21130 1.01000 0.93299 0.95043 1.21022 0.92349 0.99357 0.99048 1.21105 0.96478 0.98125 1.01807 1.17617 0.77126 0.97500 1.00535 1.91483 1.30627 1.94871 1.95258 1.21068 0.93656 1.00864 1.01202 0.93258 0.93042 0.92662 0.92299 0.92044 0.97100 0.97408 0.92728 0.83098 0.94094 0.93325 0.78684 0.84034 0.85211 0.85180 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.52 37.16 0.35 -1.37 16 2 C 0.08 1.16 2.53 -67.71 -0.17 0.98 16 3 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 4 C -0.13 -2.40 4.44 -26.73 -0.12 -2.52 16 5 C -0.01 -0.31 3.14 -27.88 -0.09 -0.39 16 6 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 7 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 10 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 11 H -0.27 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 N -0.67 -9.87 5.23 -100.96 -0.53 -10.39 16 15 C 0.12 1.80 1.81 -68.87 -0.12 1.67 16 16 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 17 C 0.10 1.12 6.79 37.16 0.25 1.37 16 18 O -0.55 -6.16 12.05 -35.23 -0.42 -6.58 16 19 C -0.05 -0.78 4.59 -104.63 -0.48 -1.26 16 20 C -0.09 -1.17 7.99 -39.58 -0.32 -1.49 16 21 C -0.10 -1.23 10.04 -39.59 -0.40 -1.63 16 22 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 23 C 0.09 1.43 7.30 -39.42 -0.29 1.14 16 24 F -0.14 -2.36 17.27 2.25 0.04 -2.32 16 25 C -0.15 -2.37 9.65 -39.51 -0.38 -2.75 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 32 H 0.01 0.18 6.36 -51.93 -0.33 -0.15 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.35 5.63 6.93 -39.29 -0.27 5.36 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.54 7.93 -51.93 -0.41 0.13 16 37 H 0.37 2.50 9.12 45.56 0.42 2.92 16 38 H 0.14 1.87 7.47 -52.48 -0.39 1.48 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -31.91 337.95 -7.78 -39.69 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.48 Total: 6.38 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.59 Total: -21.94 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.25 Total: -37.75 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.42 Total: -6.58 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.91 -7.78 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.392 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds