Wall clock time and date at job start Tue Mar 31 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47454 * 2 1 4 4 C 1.53004 * 109.46915 * 119.99746 * 2 1 3 5 5 C 1.52999 * 109.46946 * 184.99654 * 4 2 1 6 6 C 1.50703 * 109.47151 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99565 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00322 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99795 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46959 * 60.00324 * 10 8 6 12 12 H 1.48502 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47033 * 300.00011 * 10 8 6 14 14 N 1.46899 * 109.47011 * 239.99539 * 2 1 3 15 15 C 1.46898 * 110.99909 * 83.87612 * 14 2 1 16 16 H 1.09000 * 109.47610 * 326.70353 * 15 14 2 17 17 C 1.53000 * 109.47426 * 206.69947 * 15 14 2 18 18 O 1.42899 * 109.47092 * 295.86060 * 17 15 14 19 19 C 1.50704 * 109.46936 * 86.70250 * 15 14 2 20 20 C 1.38263 * 119.98862 * 39.98023 * 19 15 14 21 21 C 1.38223 * 120.04855 * 180.02562 * 20 19 15 22 22 C 1.38217 * 120.02904 * 359.97329 * 21 20 19 23 23 C 1.38435 * 119.97480 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.02538 * 179.97438 * 23 22 21 25 25 C 1.38183 * 119.98641 * 219.99980 * 19 15 14 26 26 H 1.09004 * 109.47528 * 175.17934 * 1 2 3 27 27 H 1.09002 * 109.47435 * 295.18196 * 1 2 3 28 28 H 1.09001 * 109.46968 * 55.17865 * 1 2 3 29 29 H 1.08994 * 109.47151 * 305.00001 * 4 2 1 30 30 H 1.09002 * 109.46766 * 65.00304 * 4 2 1 31 31 H 1.08994 * 109.47479 * 300.00146 * 5 4 2 32 32 H 1.08994 * 109.47103 * 60.00449 * 5 4 2 33 33 H 0.96995 * 120.00018 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00226 * 319.92497 * 14 2 1 35 35 H 1.09001 * 109.46668 * 55.86012 * 17 15 14 36 36 H 1.08993 * 109.47257 * 175.85494 * 17 15 14 37 37 H 0.96704 * 113.99838 * 180.02562 * 18 17 15 38 38 H 1.07992 * 119.97406 * 359.97438 * 20 19 15 39 39 H 1.08004 * 119.98490 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00975 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01211 * 359.72668 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0670 -1.3232 2.5446 7 1 3.3685 -1.8036 3.2137 8 6 5.4182 -1.3593 2.8164 9 7 6.2688 -0.7738 2.0019 10 14 6.0409 -2.2398 4.3418 11 1 5.6486 -3.6708 4.2820 12 1 7.5208 -2.1339 4.4050 13 1 5.4482 -1.6141 5.5510 14 7 2.0196 -0.6926 -1.1994 15 6 2.0571 0.2157 -2.3533 16 1 1.2393 0.9324 -2.2784 17 6 1.9100 -0.5929 -3.6438 18 8 3.0328 -1.4646 -3.7904 19 6 3.3714 0.9531 -2.3696 20 6 4.5403 0.2893 -2.0459 21 6 5.7462 0.9646 -2.0599 22 6 5.7851 2.3041 -2.3982 23 6 4.6154 2.9698 -2.7225 24 9 4.6520 4.2792 -3.0528 25 6 3.4076 2.2924 -2.7077 26 1 -0.3634 -1.0240 -0.0864 27 1 -0.3634 0.4373 0.9300 28 1 -0.3633 0.5868 -0.8437 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0729 0.4261 32 1 3.8531 0.4369 1.3574 33 1 7.2193 -0.7989 2.1933 34 1 1.4606 -1.5084 -1.3994 35 1 0.9948 -1.1833 -3.6003 36 1 1.8639 0.0865 -4.4949 37 1 3.0065 -2.0089 -4.5892 38 1 4.5108 -0.7572 -1.7811 39 1 6.6587 0.4452 -1.8065 40 1 6.7276 2.8313 -2.4094 41 1 2.4950 2.8097 -2.9645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:45 Heat of formation + Delta-G solvation = -81.629708 kcal Electronic energy + Delta-G solvation = -22656.695310 eV Core-core repulsion = 19257.453977 eV Total energy + Delta-G solvation = -3399.241333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.53973 -39.30659 -37.22584 -36.19887 -33.43635 -32.27712 -30.33176 -29.77962 -28.75522 -27.12383 -24.95276 -23.29468 -22.25156 -21.41679 -20.21723 -19.73709 -17.55659 -16.89180 -16.07844 -15.86305 -15.62593 -15.37301 -15.15933 -14.96639 -14.36435 -14.28312 -13.75538 -13.24595 -13.09743 -12.88205 -12.58956 -12.35128 -12.21497 -12.08945 -11.79536 -11.52917 -11.23874 -11.11309 -10.87843 -10.77842 -10.55495 -10.43838 -10.18546 -9.95651 -9.56992 -9.16576 -8.85816 -8.53264 -8.18809 -8.09626 -7.89658 -5.83347 -3.83874 1.64131 1.73008 3.41009 3.45242 3.47787 4.02783 4.26460 4.43074 4.57809 4.62977 4.93827 5.12356 5.19695 5.32288 5.34653 5.45383 5.48750 5.51789 5.54517 5.65942 5.75295 5.81493 5.90270 6.11409 6.25264 6.30459 6.42212 6.47739 6.61845 6.70496 6.91653 6.99233 7.10318 7.35583 7.43760 7.50649 7.71007 7.81966 7.90483 8.14536 8.29907 8.63105 9.24393 9.77945 11.27068 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005872 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.680882 B = 4766.882194 C = 5795.527834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.033 3.967 6 C -0.519 4.519 7 H 0.048 0.952 8 C 0.059 3.941 9 N -0.890 5.890 10 Si 0.884 3.116 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.280 1.280 14 N -0.655 5.655 15 C 0.128 3.872 16 H 0.060 0.940 17 C 0.081 3.919 18 O -0.548 6.548 19 C -0.048 4.048 20 C -0.048 4.048 21 C -0.088 4.088 22 C -0.155 4.155 23 C 0.076 3.924 24 F -0.151 7.151 25 C -0.161 4.161 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.005 0.995 33 H 0.257 0.743 34 H 0.339 0.661 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.372 0.628 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 2.635 -13.910 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.004 4.004 6 C -0.558 4.558 7 H 0.066 0.934 8 C -0.142 4.142 9 N -0.530 5.530 10 Si 0.712 3.288 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.206 1.206 14 N -0.287 5.287 15 C 0.018 3.982 16 H 0.078 0.922 17 C 0.003 3.997 18 O -0.352 6.352 19 C -0.049 4.049 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.174 4.174 23 C 0.057 3.943 24 F -0.130 7.130 25 C -0.181 4.181 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.217 0.783 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.682 3.088 -13.218 15.597 hybrid contribution -0.742 -0.250 0.219 0.813 sum -8.424 2.838 -12.999 15.748 Atomic orbital electron populations 1.22560 0.98722 1.01272 1.01436 1.21807 0.90709 0.98541 0.91645 0.90983 1.21623 1.00880 0.98242 0.92865 1.18980 0.88063 0.96394 0.96981 1.21311 0.91803 1.34117 1.08535 0.93368 1.24957 0.97141 0.95774 0.96336 1.69962 1.02062 1.44185 1.36789 0.86798 0.77565 0.80303 0.84084 1.20460 1.21457 1.20566 1.60385 1.58644 1.07759 1.01873 1.20477 0.94041 0.93545 0.90142 0.92201 1.22276 0.88698 0.92245 0.96514 1.86703 1.44331 1.56829 1.47349 1.19425 0.95506 0.91691 0.98292 1.21160 0.90309 1.01625 0.93538 1.21144 0.99321 0.93160 0.97031 1.21082 0.96938 0.95948 1.03446 1.17518 0.94882 0.78011 1.03843 1.91434 1.97401 1.33588 1.90607 1.20826 0.96422 0.95084 1.05723 0.92809 0.92170 0.93876 0.93675 0.93522 0.94609 0.97640 0.93330 0.84130 0.93689 0.93467 0.78275 0.83758 0.85102 0.85648 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.16 37.16 0.34 -2.01 16 2 C 0.08 1.36 2.40 -67.71 -0.16 1.20 16 3 H 0.07 1.31 7.71 -51.93 -0.40 0.91 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.85 4.86 -27.88 -0.14 0.72 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 7 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 10 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.66 -10.04 4.69 -100.95 -0.47 -10.51 16 15 C 0.13 1.71 2.46 -68.86 -0.17 1.54 16 16 H 0.06 0.73 6.93 -51.93 -0.36 0.37 16 17 C 0.08 0.85 6.55 37.16 0.24 1.10 16 18 O -0.55 -6.46 12.06 -35.23 -0.43 -6.89 16 19 C -0.05 -0.77 4.58 -104.63 -0.48 -1.24 16 20 C -0.05 -0.87 8.25 -39.58 -0.33 -1.20 16 21 C -0.09 -1.56 10.04 -39.59 -0.40 -1.96 16 22 C -0.16 -2.55 10.03 -39.52 -0.40 -2.95 16 23 C 0.08 1.25 7.30 -39.42 -0.29 0.96 16 24 F -0.15 -2.44 17.27 2.25 0.04 -2.40 16 25 C -0.16 -2.47 9.65 -39.51 -0.38 -2.85 16 26 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.49 7.43 -51.93 -0.39 0.10 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.98 7.24 -51.93 -0.38 0.60 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.34 4.70 7.97 -39.29 -0.31 4.38 16 35 H 0.04 0.39 8.04 -51.93 -0.42 -0.03 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.37 2.63 9.12 45.56 0.42 3.04 16 38 H 0.14 2.91 7.05 -52.49 -0.37 2.54 16 39 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -31.93 343.30 -8.21 -40.14 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.55 Total: 5.93 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.69 Total: -22.49 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.26 Total: -36.53 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.43 Total: -6.89 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.93 -8.21 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.490 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds