Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47454 * 2 1 4 4 C 1.53004 * 109.46915 * 119.99746 * 2 1 3 5 5 C 1.52999 * 109.46946 * 184.99654 * 4 2 1 6 6 C 1.50703 * 109.47151 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99565 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00322 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99795 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46959 * 60.00324 * 10 8 6 12 12 H 1.48502 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47033 * 300.00011 * 10 8 6 14 14 N 1.46899 * 109.47011 * 239.99539 * 2 1 3 15 15 C 1.46898 * 110.99909 * 83.87612 * 14 2 1 16 16 H 1.09000 * 109.47610 * 326.70353 * 15 14 2 17 17 C 1.53000 * 109.47426 * 206.69947 * 15 14 2 18 18 O 1.42899 * 109.47092 * 295.86060 * 17 15 14 19 19 C 1.50704 * 109.46936 * 86.70250 * 15 14 2 20 20 C 1.38263 * 119.98862 * 39.98023 * 19 15 14 21 21 C 1.38223 * 120.04855 * 180.02562 * 20 19 15 22 22 C 1.38217 * 120.02904 * 359.97329 * 21 20 19 23 23 C 1.38435 * 119.97480 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.02538 * 179.97438 * 23 22 21 25 25 C 1.38183 * 119.98641 * 219.99980 * 19 15 14 26 26 H 1.09004 * 109.47528 * 175.17934 * 1 2 3 27 27 H 1.09002 * 109.47435 * 295.18196 * 1 2 3 28 28 H 1.09001 * 109.46968 * 55.17865 * 1 2 3 29 29 H 1.08994 * 109.47151 * 305.00001 * 4 2 1 30 30 H 1.09002 * 109.46766 * 65.00304 * 4 2 1 31 31 H 1.08994 * 109.47479 * 300.00146 * 5 4 2 32 32 H 1.08994 * 109.47103 * 60.00449 * 5 4 2 33 33 H 0.96995 * 120.00018 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00226 * 319.92497 * 14 2 1 35 35 H 1.09001 * 109.46668 * 55.86012 * 17 15 14 36 36 H 1.08993 * 109.47257 * 175.85494 * 17 15 14 37 37 H 0.96704 * 113.99838 * 180.02562 * 18 17 15 38 38 H 1.07992 * 119.97406 * 359.97438 * 20 19 15 39 39 H 1.08004 * 119.98490 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00975 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01211 * 359.72668 * 25 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0670 -1.3232 2.5446 7 1 3.3685 -1.8036 3.2137 8 6 5.4182 -1.3593 2.8164 9 7 6.2688 -0.7738 2.0019 10 14 6.0409 -2.2398 4.3418 11 1 5.6486 -3.6708 4.2820 12 1 7.5208 -2.1339 4.4050 13 1 5.4482 -1.6141 5.5510 14 7 2.0196 -0.6926 -1.1994 15 6 2.0571 0.2157 -2.3533 16 1 1.2393 0.9324 -2.2784 17 6 1.9100 -0.5929 -3.6438 18 8 3.0328 -1.4646 -3.7904 19 6 3.3714 0.9531 -2.3696 20 6 4.5403 0.2893 -2.0459 21 6 5.7462 0.9646 -2.0599 22 6 5.7851 2.3041 -2.3982 23 6 4.6154 2.9698 -2.7225 24 9 4.6520 4.2792 -3.0528 25 6 3.4076 2.2924 -2.7077 26 1 -0.3634 -1.0240 -0.0864 27 1 -0.3634 0.4373 0.9300 28 1 -0.3633 0.5868 -0.8437 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0729 0.4261 32 1 3.8531 0.4369 1.3574 33 1 7.2193 -0.7989 2.1933 34 1 1.4606 -1.5084 -1.3994 35 1 0.9948 -1.1833 -3.6003 36 1 1.8639 0.0865 -4.4949 37 1 3.0065 -2.0089 -4.5892 38 1 4.5108 -0.7572 -1.7811 39 1 6.6587 0.4452 -1.8065 40 1 6.7276 2.8313 -2.4094 41 1 2.4950 2.8097 -2.9645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = -102.803308 kcal Electronic energy + Delta-G solvation = -22657.613466 eV Core-core repulsion = 19257.453977 eV Total energy + Delta-G solvation = -3400.159490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.82925 -40.50453 -38.45363 -37.26616 -35.27507 -33.84427 -31.81913 -31.28642 -30.12056 -28.12724 -26.87758 -24.42510 -23.57790 -23.17589 -21.41847 -21.27549 -18.50315 -18.27550 -18.11568 -17.06887 -16.94153 -16.61496 -16.50095 -16.37383 -16.03218 -15.42818 -14.99096 -14.60109 -14.45020 -14.25449 -13.94484 -13.77113 -13.72882 -13.33854 -13.09482 -12.96327 -12.84970 -12.79546 -12.47956 -12.33396 -12.08988 -11.80618 -11.62493 -11.45911 -11.14505 -10.91675 -10.76036 -10.41260 -9.80739 -9.43206 -9.07410 -8.07099 -6.16750 0.35928 0.39790 1.40594 1.43200 1.50563 2.46383 2.76359 3.16002 3.24183 3.42321 3.54233 3.81608 3.98226 4.10345 4.21514 4.24593 4.39888 4.47640 4.49073 4.55547 4.58100 4.67602 4.75589 4.83079 5.02022 5.03657 5.09675 5.13931 5.21939 5.28324 5.35053 5.53023 5.61184 5.65591 5.77276 5.97743 6.09608 6.13990 6.34241 6.41649 6.72837 7.02470 7.10017 7.49918 9.02522 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005872 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.680882 B = 4766.882194 C = 5795.527834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 H 0.052 0.948 4 C -0.090 4.090 5 C 0.047 3.953 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.004 3.996 9 N -0.922 5.922 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.272 1.272 14 N -0.674 5.674 15 C 0.126 3.874 16 H 0.082 0.918 17 C 0.085 3.915 18 O -0.577 6.577 19 C -0.047 4.047 20 C -0.065 4.065 21 C -0.109 4.109 22 C -0.162 4.162 23 C 0.070 3.930 24 F -0.149 7.149 25 C -0.157 4.157 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.014 0.986 32 H -0.033 1.033 33 H 0.258 0.742 34 H 0.349 0.651 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.390 0.610 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.808 2.550 -14.366 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 H 0.070 0.930 4 C -0.128 4.128 5 C 0.010 3.990 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.194 4.194 9 N -0.562 5.562 10 Si 0.779 3.221 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.197 1.197 14 N -0.306 5.306 15 C 0.017 3.983 16 H 0.100 0.900 17 C 0.007 3.993 18 O -0.384 6.384 19 C -0.048 4.048 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.181 4.181 23 C 0.051 3.949 24 F -0.128 7.128 25 C -0.176 4.176 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.032 0.968 32 H -0.014 1.014 33 H 0.067 0.933 34 H 0.170 0.830 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.809 2.988 -13.691 17.105 hybrid contribution -0.042 -0.220 0.340 0.407 sum -9.851 2.768 -13.350 16.820 Atomic orbital electron populations 1.22409 0.95200 1.02613 1.02557 1.21510 0.93292 0.96588 0.90326 0.92995 1.21468 0.96911 0.99035 0.95422 1.18751 0.91873 0.93239 0.95142 1.21779 0.92406 1.34556 1.09612 0.93119 1.25846 0.97441 0.96507 0.99611 1.70112 1.02301 1.45185 1.38575 0.85692 0.76989 0.79366 0.80083 1.19392 1.21003 1.19682 1.60166 1.59445 1.08679 1.02352 1.20631 0.92967 0.93949 0.90793 0.90018 1.22309 0.89213 0.92541 0.95282 1.86665 1.45314 1.57556 1.48910 1.19730 0.96022 0.92100 0.96955 1.21001 0.91637 1.00559 0.95159 1.21176 0.99189 0.94054 0.98285 1.21208 0.98073 0.95433 1.03359 1.17671 0.95267 0.78184 1.03820 1.91438 1.97418 1.33336 1.90562 1.21124 0.97192 0.94750 1.04584 0.91579 0.92172 0.91405 0.93876 0.93311 0.96787 1.01429 0.93279 0.82997 0.91029 0.91645 0.76095 0.86597 0.85974 0.84149 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.16 71.98 0.66 -3.21 16 2 C 0.09 2.97 2.40 44.92 0.11 3.07 16 3 H 0.05 1.87 7.71 -2.39 -0.02 1.85 16 4 C -0.09 -3.74 4.83 30.60 0.15 -3.59 16 5 C 0.05 2.54 4.86 29.85 0.15 2.69 16 6 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 7 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.92 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.95 45.72 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 14 N -0.67 -20.01 4.69 -473.31 -2.22 -22.23 16 15 C 0.13 3.13 2.46 44.17 0.11 3.23 16 16 H 0.08 1.69 6.93 -2.39 -0.02 1.67 16 17 C 0.08 1.54 6.55 71.98 0.47 2.01 16 18 O -0.58 -13.00 12.06 -148.98 -1.80 -14.79 16 19 C -0.05 -1.48 4.58 -19.87 -0.09 -1.57 16 20 C -0.07 -2.47 8.25 22.27 0.18 -2.28 16 21 C -0.11 -4.08 10.04 22.26 0.22 -3.85 16 22 C -0.16 -5.45 10.03 22.31 0.22 -5.22 16 23 C 0.07 2.23 7.30 22.37 0.16 2.40 16 24 F -0.15 -4.61 17.27 44.97 0.78 -3.83 16 25 C -0.16 -4.60 9.65 22.31 0.22 -4.39 16 26 H 0.07 1.37 8.05 -2.38 -0.02 1.35 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.25 7.43 -2.39 -0.02 1.23 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.01 0.80 7.24 -2.39 -0.02 0.78 16 32 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.35 9.03 7.97 -89.69 -0.72 8.31 16 35 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.39 4.99 9.12 -74.05 -0.68 4.32 16 38 H 0.12 5.03 7.05 -2.91 -0.02 5.01 16 39 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.15 3.46 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -71.14 343.30 1.97 -69.18 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.36 Total: 22.66 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.25 Total: -41.88 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.93 Total: -79.08 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.80 Total: -14.79 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.78 Total: -3.83 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.14 1.97 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.626 kcal (2) G-P(sol) polarization free energy of solvation -71.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds