Wall clock time and date at job start Tue Mar 31 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00172 * 2 1 4 4 C 1.38660 * 120.06102 * 359.97438 * 3 2 1 5 5 C 1.38179 * 119.97076 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.09020 * 359.75148 * 5 4 3 7 7 C 1.38251 * 120.12692 * 0.50483 * 6 5 4 8 8 C 1.50703 * 119.98372 * 179.76996 * 7 6 5 9 9 N 1.46894 * 109.47113 * 259.72298 * 8 7 6 10 10 C 1.46906 * 111.00072 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47040 * 35.00003 * 10 9 8 12 12 C 1.52993 * 109.47378 * 275.00214 * 10 9 8 13 13 C 1.53002 * 109.47053 * 154.99769 * 10 9 8 14 14 C 1.53000 * 109.47379 * 295.00410 * 13 10 9 15 15 C 1.50695 * 109.47339 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99588 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00492 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00469 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46990 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47327 * 120.00073 * 19 17 15 22 22 H 1.48496 * 109.47273 * 240.00077 * 19 17 15 23 23 C 1.38333 * 120.03087 * 359.48925 * 7 6 5 24 24 F 1.35102 * 120.04577 * 180.27521 * 23 7 6 25 25 H 1.09001 * 109.46797 * 60.00330 * 1 2 3 26 26 H 1.09002 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47165 * 300.00076 * 1 2 3 28 28 H 1.08004 * 120.01666 * 0.04348 * 4 3 2 29 29 H 1.07997 * 119.95742 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.93267 * 180.25283 * 6 5 4 31 31 H 1.08998 * 109.46993 * 139.72192 * 8 7 6 32 32 H 1.09000 * 109.46979 * 19.72487 * 8 7 6 33 33 H 1.00901 * 111.00370 * 56.04902 * 9 8 7 34 34 H 1.09004 * 109.46998 * 59.99419 * 12 10 9 35 35 H 1.08992 * 109.47715 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.46862 * 299.99897 * 12 10 9 37 37 H 1.08998 * 109.46957 * 55.00131 * 13 10 9 38 38 H 1.09000 * 109.47241 * 175.00051 * 13 10 9 39 39 H 1.09006 * 109.46717 * 300.00085 * 14 13 10 40 40 H 1.09000 * 109.47227 * 59.99633 * 14 13 10 41 41 H 0.97006 * 120.00368 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3024 3.6776 0.0041 7 6 4.0579 2.5198 -0.0007 8 6 5.5627 2.6024 -0.0002 9 7 6.0652 2.3883 -1.3638 10 6 7.5319 2.4626 -1.4021 11 1 7.9408 2.0492 -0.4801 12 6 7.9651 3.9232 -1.5423 13 6 8.0522 1.6594 -2.5959 14 6 7.7270 0.1780 -2.3947 15 6 8.2401 -0.6132 -3.5702 16 1 8.7470 -0.1096 -4.3800 17 6 8.0624 -1.9798 -3.6118 18 7 7.4446 -2.5929 -2.6259 19 14 8.6977 -2.9604 -5.0693 20 1 9.3500 -2.0422 -6.0371 21 1 9.6850 -3.9645 -4.5979 22 1 7.5639 -3.6541 -5.7313 23 6 3.4333 1.2855 0.0000 24 9 4.1713 0.1539 0.0009 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2137 2.3201 -0.0002 29 1 1.3342 4.5115 -0.0019 30 1 3.7916 4.6405 0.0078 31 1 5.9684 1.8368 0.6610 32 1 5.8724 3.5868 0.3507 33 1 5.6533 3.0461 -2.0086 34 1 7.5943 4.4953 -0.6918 35 1 9.0533 3.9784 -1.5702 36 1 7.5562 4.3365 -2.4643 37 1 7.5750 2.0153 -3.5090 38 1 9.1318 1.7867 -2.6767 39 1 8.2042 -0.1779 -1.4815 40 1 6.6475 0.0506 -2.3138 41 1 7.3192 -3.5543 -2.6553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:38 Heat of formation + Delta-G solvation = -69.427354 kcal Electronic energy + Delta-G solvation = -21999.769332 eV Core-core repulsion = 18601.057133 eV Total energy + Delta-G solvation = -3398.712200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.32991 -40.01249 -38.04120 -36.75980 -33.39532 -32.21098 -30.29741 -29.92761 -28.64464 -27.40475 -25.27965 -24.51655 -22.54028 -21.39206 -21.12908 -19.74953 -18.02678 -16.93711 -16.86417 -16.10633 -16.01611 -15.28985 -15.04864 -14.64575 -14.59166 -14.44970 -14.25165 -13.78381 -13.23362 -12.80197 -12.70157 -12.40106 -12.37047 -12.22141 -12.11623 -11.66514 -11.46828 -11.39466 -11.15926 -11.10092 -10.93704 -10.75586 -10.35893 -10.13806 -9.55216 -9.12296 -8.81931 -8.76265 -8.16356 -8.14152 -7.83515 -5.78062 -3.79632 1.10009 1.25371 3.09985 3.42330 3.49199 3.51690 3.53291 4.35912 4.54795 4.61892 4.64600 4.84143 4.93399 4.99875 5.12569 5.14158 5.21592 5.33555 5.39427 5.51741 5.56681 5.62974 5.71181 5.89658 5.96914 6.06679 6.14647 6.20756 6.29887 6.34901 6.45791 6.63570 6.73358 6.95828 7.27810 7.38227 7.52588 7.83964 7.94954 8.18620 8.36203 8.67458 9.30066 9.82438 11.32737 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.004779 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.159597 B = 5858.068485 C = 7427.034615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.088 3.912 4 C -0.186 4.186 5 C -0.098 4.098 6 C -0.125 4.125 7 C -0.081 4.081 8 C 0.101 3.899 9 N -0.664 5.664 10 C 0.084 3.916 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.097 4.097 14 C 0.028 3.972 15 C -0.518 4.518 16 H 0.050 0.950 17 C 0.056 3.944 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.285 1.285 23 C 0.104 3.896 24 F -0.111 7.111 25 H 0.056 0.944 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.336 0.664 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.006 0.994 40 H 0.034 0.966 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.631 14.503 8.155 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.042 3.958 4 C -0.205 4.205 5 C -0.117 4.117 6 C -0.144 4.144 7 C -0.082 4.082 8 C -0.028 4.028 9 N -0.294 5.294 10 C -0.025 4.025 11 H 0.091 0.909 12 C -0.239 4.239 13 C -0.135 4.135 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.083 3.917 24 F -0.089 7.089 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.154 0.846 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.053 0.947 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.571 13.387 8.263 20.776 hybrid contribution 0.242 0.247 -0.728 0.806 sum -13.329 13.633 7.535 20.501 Atomic orbital electron populations 1.23082 0.78322 1.04180 1.01128 1.86201 1.21359 1.25757 1.88673 1.19074 0.90977 0.85613 1.00156 1.21070 0.99983 0.91610 1.07803 1.20864 0.94424 0.96974 0.99408 1.20835 0.93553 0.97378 1.02621 1.19804 0.96748 0.90982 1.00686 1.20817 0.88700 1.00347 0.92955 1.60532 1.06657 1.57058 1.05141 1.21765 0.86376 0.93197 1.01182 0.90878 1.22540 1.02080 0.98508 1.00783 1.21623 0.98099 0.99030 0.94774 1.19005 0.98209 0.87851 0.95796 1.21374 1.36443 0.92239 1.05590 0.93144 1.25002 0.95590 0.97989 0.95850 1.70008 1.42635 1.08976 1.31497 0.86656 0.78541 0.80236 0.83251 1.19924 1.21226 1.21177 1.16855 0.85654 0.83378 1.05798 1.91632 1.76021 1.47920 1.93358 0.92566 0.88039 0.92731 0.84890 0.85398 0.85311 0.89681 0.94286 0.84612 0.93761 0.92191 0.92767 0.93527 0.93515 0.97515 0.94732 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.54 10.36 -19.61 -0.20 -4.74 16 3 C 0.09 1.29 6.69 -39.18 -0.26 1.03 16 4 C -0.19 -2.05 9.04 -39.45 -0.36 -2.40 16 5 C -0.10 -0.98 10.04 -39.59 -0.40 -1.37 16 6 C -0.13 -1.38 9.66 -39.57 -0.38 -1.77 16 7 C -0.08 -1.15 5.40 -104.58 -0.56 -1.72 16 8 C 0.10 1.47 5.33 -4.98 -0.03 1.45 16 9 N -0.66 -11.25 5.69 -107.99 -0.61 -11.86 16 10 C 0.08 1.45 2.59 -67.71 -0.18 1.28 16 11 H 0.07 1.31 7.80 -51.93 -0.41 0.91 16 12 C -0.18 -2.42 9.16 37.15 0.34 -2.08 16 13 C -0.10 -2.09 4.83 -26.73 -0.13 -2.21 16 14 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 15 C -0.52 -15.53 9.11 -34.45 -0.31 -15.84 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -28.51 13.29 55.43 0.74 -27.77 16 19 Si 0.88 22.75 29.54 -169.99 -5.02 17.73 16 20 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C 0.10 1.76 7.25 -39.30 -0.29 1.47 16 24 F -0.11 -2.34 16.51 2.25 0.04 -2.31 16 25 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.11 8.03 -52.48 -0.42 0.69 16 31 H 0.08 1.38 7.86 -51.93 -0.41 0.97 16 32 H 0.04 0.47 7.29 -51.93 -0.38 0.09 16 33 H 0.34 5.16 8.46 -39.29 -0.33 4.83 16 34 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.03 1.04 7.75 -51.93 -0.40 0.63 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -34.78 345.17 -8.02 -42.80 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.36 Total: -0.38 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -1.79 Total: -18.67 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.12 Total: -39.63 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.20 Total: -4.74 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.78 -8.02 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.628 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds