Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35952 * 116.99997 * 2 1 4 4 C 1.38658 * 120.06554 * 359.97438 * 3 2 1 5 5 C 1.38181 * 119.97391 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.09391 * 0.02562 * 5 4 3 7 7 C 1.38265 * 120.12276 * 359.97433 * 6 5 4 8 8 C 1.50697 * 119.98065 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46943 * 259.99945 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47224 * 325.00460 * 10 9 8 12 12 C 1.53002 * 109.47102 * 85.00132 * 10 9 8 13 13 C 1.52996 * 109.46819 * 205.00022 * 10 9 8 14 14 C 1.53002 * 109.47140 * 65.00372 * 13 10 9 15 15 C 1.50702 * 109.47074 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00093 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99892 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99942 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00062 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46941 * 90.00194 * 19 17 15 21 21 H 1.48499 * 109.46901 * 210.00257 * 19 17 15 22 22 H 1.48495 * 109.47016 * 329.99706 * 19 17 15 23 23 C 1.38325 * 120.03129 * 0.25725 * 7 6 5 24 24 F 1.35100 * 120.04948 * 179.72259 * 23 7 6 25 25 H 1.09003 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47352 * 300.00307 * 1 2 3 27 27 H 1.09001 * 109.46939 * 60.00000 * 1 2 3 28 28 H 1.08008 * 120.01252 * 359.95503 * 4 3 2 29 29 H 1.07995 * 119.95891 * 180.02562 * 5 4 3 30 30 H 1.07992 * 119.94032 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.46763 * 140.00387 * 8 7 6 32 32 H 1.08995 * 109.47483 * 20.00043 * 8 7 6 33 33 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 34 34 H 1.08999 * 109.47105 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.46950 * 299.99914 * 12 10 9 36 36 H 1.09000 * 109.46959 * 59.99562 * 12 10 9 37 37 H 1.09006 * 109.47142 * 184.99909 * 13 10 9 38 38 H 1.08991 * 109.47453 * 304.99990 * 13 10 9 39 39 H 1.08993 * 109.46652 * 299.99542 * 14 13 10 40 40 H 1.09003 * 109.46959 * 59.99778 * 14 13 10 41 41 H 0.97002 * 119.99492 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3024 3.6777 0.0005 7 6 4.0580 2.5198 0.0011 8 6 5.5627 2.6024 0.0011 9 7 6.0648 2.3885 -1.3628 10 6 7.5315 2.4616 -1.4013 11 1 7.8771 3.2067 -0.6846 12 6 8.1199 1.0960 -1.0410 13 6 7.9856 2.8576 -2.8076 14 6 7.5014 4.2750 -3.1198 15 6 7.9492 4.6652 -4.5048 16 1 8.5222 3.9718 -5.1025 17 6 7.6273 5.9075 -5.0089 18 7 8.0176 6.2478 -6.2179 19 14 6.6367 7.1071 -3.9749 20 1 7.5602 7.9474 -3.1710 21 1 5.8256 7.9756 -4.8654 22 1 5.7369 6.3519 -3.0666 23 6 3.4334 1.2856 -0.0043 24 9 4.1713 0.1539 -0.0094 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2137 2.3200 -0.0017 29 1 1.3343 4.5115 0.0000 30 1 3.7916 4.6404 0.0005 31 1 5.9686 1.8365 0.6620 32 1 5.8725 3.5867 0.3521 33 1 5.7370 1.5099 -1.7352 34 1 9.2082 1.1504 -1.0691 35 1 7.7963 0.8140 -0.0391 36 1 7.7742 0.3510 -1.7576 37 1 9.0739 2.8256 -2.8606 38 1 7.5659 2.1620 -3.5343 39 1 6.4132 4.3070 -3.0669 40 1 7.9211 4.9706 -2.3931 41 1 7.7915 7.1220 -6.5724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = -69.360616 kcal Electronic energy + Delta-G solvation = -21913.704978 eV Core-core repulsion = 18514.995672 eV Total energy + Delta-G solvation = -3398.709306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.84797 -40.18593 -38.18474 -36.91410 -33.51125 -32.28331 -30.48162 -30.28931 -28.88697 -27.57464 -25.49499 -24.68853 -22.70996 -21.46110 -21.00926 -19.83074 -18.26865 -17.23258 -17.00047 -16.53676 -16.36315 -15.49209 -15.14771 -14.98848 -14.80876 -14.65425 -14.19149 -14.00909 -13.23831 -13.09062 -12.82961 -12.61921 -12.48652 -12.34571 -12.23543 -12.01078 -11.68664 -11.55356 -11.33942 -11.30839 -11.13882 -10.79626 -10.45512 -9.78399 -9.61487 -9.44001 -8.99750 -8.93661 -8.40084 -8.36008 -8.00914 -5.91385 -3.87087 0.94878 1.12838 2.88407 3.39328 3.40017 3.46663 3.54798 4.09996 4.42477 4.56320 4.58303 4.66807 4.80180 4.83010 4.98571 5.06774 5.09629 5.16855 5.29098 5.44429 5.49636 5.52006 5.62159 5.67349 5.82028 5.93915 6.03830 6.14232 6.25356 6.31207 6.35359 6.44645 6.56635 6.75746 7.06513 7.14040 7.32004 7.55315 7.66541 7.78966 7.97785 8.69474 9.15154 9.72878 11.22608 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.004370 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.568504 B = 6406.120961 C = 7357.130747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.092 3.908 4 C -0.186 4.186 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.070 4.070 8 C 0.097 3.903 9 N -0.668 5.668 10 C 0.081 3.919 11 H 0.073 0.927 12 C -0.181 4.181 13 C -0.090 4.090 14 C -0.007 4.007 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.063 3.937 18 N -0.910 5.910 19 Si 0.880 3.120 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.261 1.261 23 C 0.072 3.928 24 F -0.133 7.133 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.340 0.660 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.002 0.998 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 -10.129 17.364 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.046 3.954 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.126 4.126 7 C -0.071 4.071 8 C -0.031 4.031 9 N -0.299 5.299 10 C -0.028 4.028 11 H 0.092 0.908 12 C -0.240 4.240 13 C -0.128 4.128 14 C -0.044 4.044 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.550 5.550 19 Si 0.707 3.293 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.185 1.185 23 C 0.052 3.948 24 F -0.111 7.111 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.020 0.980 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.803 -9.571 17.047 24.522 hybrid contribution -0.445 -0.197 0.752 0.896 sum -15.248 -9.768 17.799 25.391 Atomic orbital electron populations 1.23094 0.78083 1.04129 1.01456 1.86127 1.21589 1.25917 1.88896 1.18938 0.90692 0.85585 1.00224 1.21105 1.00101 0.91585 1.07706 1.21012 0.94608 0.97191 0.97940 1.20947 0.93360 0.97991 1.00309 1.19788 0.96827 0.90827 0.99690 1.20862 0.88489 1.02140 0.91651 1.60663 1.10068 1.40573 1.18574 1.21803 0.85753 0.95253 1.00021 0.90848 1.22517 1.01922 0.98926 1.00601 1.21450 0.99106 0.99693 0.92514 1.19479 0.97442 0.91448 0.96030 1.21275 1.34148 1.00682 0.99249 0.91427 1.25034 0.95705 0.98162 0.94824 1.69938 1.47398 1.21290 1.16404 0.86762 0.80887 0.81066 0.80563 1.20652 1.21764 1.18492 1.16818 0.85840 0.82629 1.09539 1.91476 1.76438 1.48935 1.94273 0.88072 0.92572 0.92388 0.84720 0.84983 0.84495 0.94170 0.89407 0.84207 0.92030 0.93590 0.92557 0.92789 0.92828 0.95005 0.97954 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.68 10.36 -19.59 -0.20 -3.88 16 3 C 0.09 1.14 6.69 -39.18 -0.26 0.88 16 4 C -0.19 -1.89 9.04 -39.45 -0.36 -2.25 16 5 C -0.09 -0.92 10.04 -39.59 -0.40 -1.32 16 6 C -0.11 -1.29 9.66 -39.56 -0.38 -1.68 16 7 C -0.07 -0.93 5.40 -104.58 -0.56 -1.50 16 8 C 0.10 1.33 5.33 -4.98 -0.03 1.30 16 9 N -0.67 -10.70 5.69 -107.99 -0.61 -11.32 16 10 C 0.08 1.31 2.59 -67.71 -0.18 1.14 16 11 H 0.07 1.18 7.80 -51.93 -0.41 0.77 16 12 C -0.18 -2.46 9.16 37.16 0.34 -2.12 16 13 C -0.09 -1.82 4.83 -26.73 -0.13 -1.94 16 14 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 15 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -29.00 13.96 55.43 0.77 -28.22 16 19 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.07 1.00 7.24 -39.30 -0.28 0.71 16 24 F -0.13 -1.97 16.51 2.25 0.04 -1.93 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.14 0.99 6.30 -52.48 -0.33 0.65 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.54 8.03 -52.49 -0.42 1.12 16 31 H 0.04 0.52 7.25 -51.93 -0.38 0.14 16 32 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 33 H 0.34 5.36 8.45 -39.29 -0.33 5.03 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.57 7.45 -51.93 -0.39 0.19 16 36 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.81 6.81 -51.93 -0.35 0.45 16 40 H 0.00 0.05 7.57 -51.93 -0.39 -0.34 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -33.54 341.55 -7.64 -41.18 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.33 Total: 0.89 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.79 Total: -19.64 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.16 Total: -39.54 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.20 Total: -3.88 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.54 -7.64 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.180 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds