Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99704 * 2 1 4 4 C 1.38773 * 120.04154 * 180.02562 * 3 2 1 5 5 C 1.38126 * 119.99247 * 180.27990 * 4 3 2 6 6 C 1.38251 * 120.08195 * 359.48991 * 5 4 3 7 7 C 1.50701 * 119.95796 * 180.23586 * 6 5 4 8 8 N 1.46900 * 109.47332 * 260.27380 * 7 6 5 9 9 C 1.46894 * 111.00274 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47349 * 34.99594 * 9 8 7 11 11 C 1.53001 * 109.47028 * 274.99839 * 9 8 7 12 12 C 1.52998 * 109.47264 * 154.99994 * 9 8 7 13 13 C 1.53001 * 109.46984 * 294.99929 * 12 9 8 14 14 C 1.50701 * 109.47007 * 180.02562 * 13 12 9 15 15 H 1.07999 * 120.00056 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99870 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00082 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47096 * 90.00007 * 18 16 14 20 20 H 1.48497 * 109.47287 * 210.00355 * 18 16 14 21 21 H 1.48498 * 109.46935 * 329.99885 * 18 16 14 22 22 C 1.38470 * 120.08505 * 0.50826 * 6 5 4 23 23 F 1.35100 * 119.99970 * 179.72866 * 22 6 5 24 24 C 1.38390 * 120.00497 * 359.74509 * 22 6 5 25 25 H 1.08994 * 109.47303 * 59.99675 * 1 2 3 26 26 H 1.09001 * 109.46696 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47155 * 299.99337 * 1 2 3 28 28 H 1.08002 * 119.99958 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.95824 * 179.74821 * 5 4 3 30 30 H 1.09000 * 109.47244 * 20.27732 * 7 6 5 31 31 H 1.09004 * 109.47522 * 140.27359 * 7 6 5 32 32 H 1.00905 * 110.99568 * 303.95785 * 8 7 6 33 33 H 1.08996 * 109.47400 * 179.97438 * 11 9 8 34 34 H 1.08999 * 109.46856 * 300.00057 * 11 9 8 35 35 H 1.08999 * 109.47253 * 60.00118 * 11 9 8 36 36 H 1.08998 * 109.47339 * 54.99874 * 12 9 8 37 37 H 1.08999 * 109.47117 * 174.99665 * 12 9 8 38 38 H 1.09005 * 109.46913 * 299.99455 * 13 12 9 39 39 H 1.08999 * 109.47409 * 59.99914 * 13 12 9 40 40 H 0.96999 * 120.00370 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.03775 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0577 2.5159 0.0053 6 6 3.3053 3.6758 0.0010 7 6 3.9912 5.0177 0.0021 8 7 4.0006 5.5618 1.3665 9 6 4.6623 6.8727 1.4060 10 1 4.4489 7.4154 0.4852 11 6 6.1735 6.6771 1.5441 12 6 4.1401 7.6718 2.6017 13 6 2.6536 7.9746 2.4026 14 6 2.1394 8.7623 3.5800 15 1 2.8060 9.0206 4.3895 16 6 0.8177 9.1522 3.6243 17 7 0.3688 9.8391 4.6520 18 14 -0.3355 8.7047 2.2246 19 1 -0.9712 7.3928 2.5071 20 1 -1.3860 9.7465 2.0964 21 1 0.4340 8.6193 0.9574 22 6 1.9224 3.6061 0.0015 23 9 1.1889 4.7407 0.0029 24 6 1.2915 2.3744 0.0010 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 4.0206 0.3793 -0.0005 29 1 5.1363 2.5726 0.0090 30 1 5.0163 4.9020 -0.3500 31 1 3.4554 5.7002 -0.6576 32 1 3.0647 5.6181 1.7397 33 1 6.6646 7.6497 1.5730 34 1 6.3869 6.1344 2.4650 35 1 6.5455 6.1079 0.6924 36 1 4.2734 7.0900 3.5137 37 1 4.6938 8.6071 2.6833 38 1 2.5203 8.5566 1.4906 39 1 2.1000 7.0393 2.3210 40 1 -0.5610 10.1138 4.6830 41 1 0.2129 2.3195 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -72.364424 kcal Electronic energy + Delta-G solvation = -21958.111488 eV Core-core repulsion = 18559.271927 eV Total energy + Delta-G solvation = -3398.839561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.92937 -40.28311 -38.10394 -36.86851 -33.44314 -32.21658 -30.89637 -30.17455 -29.10576 -27.57158 -25.53193 -24.35460 -22.87638 -21.45761 -21.03341 -19.62108 -18.66075 -17.22773 -16.82098 -16.16781 -16.16069 -15.61264 -15.56900 -15.19255 -14.89339 -14.61614 -14.18741 -14.11469 -13.42439 -13.04217 -12.81751 -12.59497 -12.50246 -12.42503 -12.28907 -11.88440 -11.72631 -11.46966 -11.42463 -11.11895 -11.09156 -10.86744 -10.48410 -9.93995 -9.74526 -9.43859 -9.15862 -9.06839 -8.52405 -8.39690 -8.06986 -6.02621 -4.00187 1.01031 1.09039 2.94621 3.32331 3.39130 3.39220 3.44206 4.13152 4.46969 4.50978 4.52122 4.73356 4.81667 4.83784 4.86677 5.03252 5.17718 5.30698 5.33584 5.38533 5.53486 5.59561 5.73158 5.82328 5.85656 5.90293 6.00375 6.10760 6.24809 6.29215 6.40424 6.43676 6.51979 6.75027 6.87947 7.06478 7.28434 7.30259 7.51806 7.71877 7.81972 8.56195 9.02935 9.60407 11.10874 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.004891 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.919103 B = 5723.183773 C = 7119.977388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.152 3.848 4 C -0.164 4.164 5 C -0.034 4.034 6 C -0.146 4.146 7 C 0.101 3.899 8 N -0.681 5.681 9 C 0.079 3.921 10 H 0.039 0.961 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.015 4.015 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.145 3.855 23 F -0.130 7.130 24 C -0.246 4.246 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.350 0.650 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -18.871 -12.832 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.106 3.894 4 C -0.182 4.182 5 C -0.053 4.053 6 C -0.147 4.147 7 C -0.028 4.028 8 N -0.316 5.316 9 C -0.031 4.031 10 H 0.057 0.943 11 C -0.193 4.193 12 C -0.144 4.144 13 C -0.053 4.053 14 C -0.555 4.555 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.191 1.191 22 C 0.125 3.875 23 F -0.109 7.109 24 C -0.266 4.266 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.171 0.829 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.582 -19.257 -12.566 23.662 hybrid contribution -2.005 0.730 -1.029 2.368 sum 3.577 -18.528 -13.595 23.257 Atomic orbital electron populations 1.23118 0.78082 1.04117 1.01772 1.86083 1.21673 1.26411 1.88478 1.18705 0.92108 0.83571 0.95031 1.20457 0.91132 0.98896 1.07753 1.20710 1.00101 0.89814 0.94645 1.19849 0.91287 0.97170 1.06411 1.20779 0.99728 0.90818 0.91473 1.60714 1.25729 1.26191 1.18949 1.21680 0.94154 0.88309 0.98919 0.94318 1.21774 0.95161 1.00806 1.01576 1.21659 0.98134 0.98439 0.96138 1.19612 0.92133 0.95957 0.97567 1.21126 0.95656 1.33778 1.04987 0.90956 1.25019 0.98149 0.94641 0.95560 1.69914 1.15725 1.38619 1.30029 0.86822 0.80847 0.78292 0.83631 1.20235 1.21402 1.19100 1.17334 0.88846 0.81728 0.99553 1.91562 1.77108 1.48851 1.93339 1.21124 1.01134 0.91202 1.13133 0.92476 0.88020 0.92271 0.84578 0.84150 0.89938 0.94335 0.82859 0.92819 0.92166 0.93721 0.91842 0.91981 0.96960 0.97312 0.92787 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.29 10.50 -19.43 -0.20 -3.49 16 3 C 0.15 1.75 6.69 -39.23 -0.26 1.49 16 4 C -0.16 -1.73 9.99 -39.42 -0.39 -2.12 16 5 C -0.03 -0.37 9.66 -39.62 -0.38 -0.75 16 6 C -0.15 -1.93 5.40 -104.53 -0.56 -2.50 16 7 C 0.10 1.40 5.33 -4.98 -0.03 1.37 16 8 N -0.68 -11.15 6.30 -107.99 -0.68 -11.83 16 9 C 0.08 1.31 2.65 -67.72 -0.18 1.13 16 10 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 11 C -0.14 -1.86 9.41 37.16 0.35 -1.51 16 12 C -0.11 -2.13 4.74 -26.73 -0.13 -2.26 16 13 C -0.02 -0.37 3.87 -27.88 -0.11 -0.48 16 14 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 18 Si 0.88 22.48 27.47 -169.99 -4.67 17.82 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 22 C 0.15 2.10 7.24 -39.44 -0.29 1.81 16 23 F -0.13 -2.20 16.66 2.25 0.04 -2.16 16 24 C -0.25 -3.07 9.02 -39.37 -0.35 -3.42 16 25 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.42 7.66 -51.92 -0.40 0.02 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.14 1.19 8.04 -52.48 -0.42 0.77 16 30 H 0.08 0.97 7.30 -51.93 -0.38 0.59 16 31 H 0.04 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.35 6.53 6.46 -39.29 -0.25 6.27 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 39 H 0.01 0.21 5.85 -51.93 -0.30 -0.09 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.14 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -32.30 339.20 -7.58 -39.89 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.18 Total: 1.88 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.77 Total: -19.58 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.09 Total: -39.47 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.20 Total: -3.49 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.30 -7.58 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.477 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds