Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99704 * 2 1 4 4 C 1.38773 * 120.04154 * 180.02562 * 3 2 1 5 5 C 1.38126 * 119.99247 * 180.27990 * 4 3 2 6 6 C 1.38251 * 120.08195 * 359.48991 * 5 4 3 7 7 C 1.50701 * 119.95796 * 180.23586 * 6 5 4 8 8 N 1.46900 * 109.47332 * 260.27380 * 7 6 5 9 9 C 1.46894 * 111.00274 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47349 * 34.99594 * 9 8 7 11 11 C 1.53001 * 109.47028 * 274.99839 * 9 8 7 12 12 C 1.52998 * 109.47264 * 154.99994 * 9 8 7 13 13 C 1.53001 * 109.46984 * 294.99929 * 12 9 8 14 14 C 1.50701 * 109.47007 * 180.02562 * 13 12 9 15 15 H 1.07999 * 120.00056 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99870 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00082 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47096 * 90.00007 * 18 16 14 20 20 H 1.48497 * 109.47287 * 210.00355 * 18 16 14 21 21 H 1.48498 * 109.46935 * 329.99885 * 18 16 14 22 22 C 1.38470 * 120.08505 * 0.50826 * 6 5 4 23 23 F 1.35100 * 119.99970 * 179.72866 * 22 6 5 24 24 C 1.38390 * 120.00497 * 359.74509 * 22 6 5 25 25 H 1.08994 * 109.47303 * 59.99675 * 1 2 3 26 26 H 1.09001 * 109.46696 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47155 * 299.99337 * 1 2 3 28 28 H 1.08002 * 119.99958 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.95824 * 179.74821 * 5 4 3 30 30 H 1.09000 * 109.47244 * 20.27732 * 7 6 5 31 31 H 1.09004 * 109.47522 * 140.27359 * 7 6 5 32 32 H 1.00905 * 110.99568 * 303.95785 * 8 7 6 33 33 H 1.08996 * 109.47400 * 179.97438 * 11 9 8 34 34 H 1.08999 * 109.46856 * 300.00057 * 11 9 8 35 35 H 1.08999 * 109.47253 * 60.00118 * 11 9 8 36 36 H 1.08998 * 109.47339 * 54.99874 * 12 9 8 37 37 H 1.08999 * 109.47117 * 174.99665 * 12 9 8 38 38 H 1.09005 * 109.46913 * 299.99455 * 13 12 9 39 39 H 1.08999 * 109.47409 * 59.99914 * 13 12 9 40 40 H 0.96999 * 120.00370 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.03775 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0577 2.5159 0.0053 6 6 3.3053 3.6758 0.0010 7 6 3.9912 5.0177 0.0021 8 7 4.0006 5.5618 1.3665 9 6 4.6623 6.8727 1.4060 10 1 4.4489 7.4154 0.4852 11 6 6.1735 6.6771 1.5441 12 6 4.1401 7.6718 2.6017 13 6 2.6536 7.9746 2.4026 14 6 2.1394 8.7623 3.5800 15 1 2.8060 9.0206 4.3895 16 6 0.8177 9.1522 3.6243 17 7 0.3688 9.8391 4.6520 18 14 -0.3355 8.7047 2.2246 19 1 -0.9712 7.3928 2.5071 20 1 -1.3860 9.7465 2.0964 21 1 0.4340 8.6193 0.9574 22 6 1.9224 3.6061 0.0015 23 9 1.1889 4.7407 0.0029 24 6 1.2915 2.3744 0.0010 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 4.0206 0.3793 -0.0005 29 1 5.1363 2.5726 0.0090 30 1 5.0163 4.9020 -0.3500 31 1 3.4554 5.7002 -0.6576 32 1 3.0647 5.6181 1.7397 33 1 6.6646 7.6497 1.5730 34 1 6.3869 6.1344 2.4650 35 1 6.5455 6.1079 0.6924 36 1 4.2734 7.0900 3.5137 37 1 4.6938 8.6071 2.6833 38 1 2.5203 8.5566 1.4906 39 1 2.1000 7.0393 2.3210 40 1 -0.5610 10.1138 4.6830 41 1 0.2129 2.3195 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -92.974789 kcal Electronic energy + Delta-G solvation = -21959.005220 eV Core-core repulsion = 18559.271927 eV Total energy + Delta-G solvation = -3399.733293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06057 -41.10736 -39.14956 -38.03201 -35.32378 -33.78814 -31.81929 -31.74825 -30.20360 -28.29006 -27.22965 -25.56660 -23.74189 -22.93991 -22.31403 -21.13556 -19.52650 -19.00409 -18.11739 -17.18585 -17.07829 -16.73288 -16.62142 -16.45979 -16.30517 -15.89236 -15.54597 -15.07635 -14.88773 -14.52294 -14.36023 -14.02044 -13.50310 -13.44504 -13.34303 -13.21425 -13.03922 -12.91970 -12.68802 -12.28933 -12.18097 -11.98626 -11.92615 -11.78740 -11.58064 -11.40806 -11.12795 -10.81019 -9.97267 -9.46974 -9.16058 -8.34439 -6.37339 0.09328 0.19697 1.28623 1.29100 1.41110 2.23532 2.29348 2.49172 3.00528 3.18865 3.36120 3.65208 3.76268 3.91083 4.01140 4.11865 4.28349 4.32053 4.32974 4.42027 4.52954 4.57160 4.64627 4.70667 4.71748 4.87237 4.96742 5.00662 5.03241 5.05864 5.12116 5.14968 5.38196 5.43112 5.48421 5.53851 5.62907 5.65414 6.16182 6.24830 6.27619 6.31946 6.70542 7.26994 8.82529 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.004891 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.919103 B = 5723.183773 C = 7119.977388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.148 3.852 4 C -0.159 4.159 5 C -0.027 4.027 6 C -0.158 4.158 7 C 0.103 3.897 8 N -0.684 5.684 9 C 0.084 3.916 10 H 0.038 0.962 11 C -0.127 4.127 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.530 4.530 15 H 0.035 0.965 16 C 0.010 3.990 17 N -0.948 5.948 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.254 1.254 22 C 0.114 3.886 23 F -0.153 7.153 24 C -0.253 4.253 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.058 0.942 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.109 0.891 31 H 0.025 0.975 32 H 0.333 0.667 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.267 0.733 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -21.088 -14.773 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.102 3.898 4 C -0.178 4.178 5 C -0.046 4.046 6 C -0.159 4.159 7 C -0.025 4.025 8 N -0.316 5.316 9 C -0.025 4.025 10 H 0.056 0.944 11 C -0.185 4.185 12 C -0.137 4.137 13 C -0.046 4.046 14 C -0.568 4.568 15 H 0.054 0.946 16 C -0.187 4.187 17 N -0.589 5.589 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.178 1.178 22 C 0.094 3.906 23 F -0.132 7.132 24 C -0.273 4.273 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.076 0.924 28 H 0.179 0.821 29 H 0.187 0.813 30 H 0.127 0.873 31 H 0.043 0.957 32 H 0.152 0.848 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.538 -21.485 -14.518 26.742 hybrid contribution -2.283 1.355 -0.358 2.679 sum 4.255 -20.130 -14.876 25.390 Atomic orbital electron populations 1.23384 0.76514 1.05932 1.02065 1.86082 1.23338 1.25773 1.88204 1.18911 0.92732 0.83621 0.94557 1.20821 0.90979 0.99811 1.06165 1.21023 1.01364 0.88938 0.93225 1.19926 0.90938 0.97683 1.07399 1.20846 1.01149 0.90822 0.89717 1.60816 1.24467 1.25724 1.20606 1.21614 0.96060 0.88077 0.96751 0.94387 1.21705 0.92592 1.01738 1.02485 1.21540 0.95473 0.98990 0.97669 1.19519 0.94895 0.95029 0.95183 1.21486 0.95481 1.34178 1.05619 0.94639 1.25915 1.00016 0.94541 0.98255 1.70051 1.16478 1.40096 1.32259 0.85761 0.78691 0.78332 0.80503 1.19461 1.20452 1.17839 1.17708 0.89567 0.81641 1.01695 1.91492 1.77728 1.50119 1.93836 1.21247 1.01823 0.90997 1.13189 0.91815 0.85515 0.92364 0.82077 0.81289 0.87281 0.95673 0.84769 0.91978 0.92454 0.91324 0.92863 0.92143 0.97090 0.97076 0.92436 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -6.04 10.50 -92.44 -0.97 -7.01 16 3 C 0.15 3.14 6.69 22.50 0.15 3.29 16 4 C -0.16 -2.90 9.99 22.37 0.22 -2.67 16 5 C -0.03 -0.51 9.66 22.25 0.21 -0.30 16 6 C -0.16 -3.94 5.40 -19.81 -0.11 -4.04 16 7 C 0.10 2.67 5.33 85.56 0.46 3.12 16 8 N -0.68 -21.48 6.30 -495.59 -3.12 -24.60 16 9 C 0.08 2.68 2.65 44.92 0.12 2.80 16 10 H 0.04 1.22 7.80 -2.39 -0.02 1.20 16 11 C -0.13 -3.16 9.41 71.98 0.68 -2.48 16 12 C -0.10 -3.98 4.74 30.59 0.15 -3.84 16 13 C -0.01 -0.43 3.87 29.85 0.12 -0.31 16 14 C -0.53 -31.74 9.66 25.60 0.25 -31.49 16 15 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 16 C 0.01 0.59 5.47 84.65 0.46 1.06 16 17 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 18 Si 0.94 46.78 27.47 68.60 1.88 48.67 16 19 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.25 -12.03 6.54 99.48 0.65 -11.38 16 22 C 0.11 3.23 7.24 22.36 0.16 3.39 16 23 F -0.15 -5.23 16.66 44.97 0.75 -4.48 16 24 C -0.25 -6.09 9.02 22.41 0.20 -5.89 16 25 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 26 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.74 7.66 -2.38 -0.02 0.73 16 28 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.17 2.13 8.04 -2.91 -0.02 2.11 16 30 H 0.11 2.20 7.30 -2.39 -0.02 2.18 16 31 H 0.03 0.72 7.85 -2.39 -0.02 0.70 16 32 H 0.33 12.35 6.46 -89.69 -0.58 11.77 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.39 7.45 -2.39 -0.02 1.37 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.01 0.53 7.20 -2.38 -0.02 0.52 16 39 H 0.01 0.54 5.85 -2.39 -0.01 0.53 16 40 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.15 3.11 6.30 -2.91 -0.02 3.09 16 Total: -1.00 -71.15 339.20 3.41 -67.74 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.39 Total: 16.50 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 4.18 Total: -36.07 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.82 Total: -85.35 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.97 Total: -7.01 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.75 Total: -4.48 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.88 Total: 48.67 kcal Total: -71.15 3.41 -67.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.238 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds