Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47322 * 2 1 4 4 C 1.53004 * 109.47327 * 239.99583 * 2 1 3 5 5 C 1.52997 * 109.47001 * 175.00109 * 4 2 1 6 6 C 1.50705 * 109.47041 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99671 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00188 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99945 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99898 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46682 * 90.00388 * 10 8 6 12 12 H 1.48494 * 109.46967 * 209.99835 * 10 8 6 13 13 H 1.48501 * 109.47183 * 330.00333 * 10 8 6 14 14 N 1.46905 * 109.46776 * 120.00219 * 2 1 3 15 15 C 1.46904 * 110.99601 * 274.99482 * 14 2 1 16 16 H 1.08998 * 109.47225 * 35.00520 * 15 14 2 17 17 C 1.52997 * 109.47449 * 275.00171 * 15 14 2 18 18 O 1.42898 * 109.47319 * 295.00414 * 17 15 14 19 19 C 1.50705 * 109.46442 * 155.00340 * 15 14 2 20 20 C 1.38215 * 120.01515 * 24.72917 * 19 15 14 21 21 C 1.38224 * 120.02278 * 179.72158 * 20 19 15 22 22 C 1.38267 * 120.05390 * 0.55223 * 21 20 19 23 23 C 1.38180 * 120.02512 * 359.72381 * 22 21 20 24 24 C 1.38444 * 120.00820 * 204.99959 * 19 15 14 25 25 F 1.35103 * 120.02639 * 0.02866 * 24 19 15 26 26 H 1.09001 * 109.46869 * 60.00305 * 1 2 3 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46867 * 300.00192 * 1 2 3 29 29 H 1.08992 * 109.47332 * 295.00474 * 4 2 1 30 30 H 1.08999 * 109.46467 * 55.00444 * 4 2 1 31 31 H 1.09000 * 109.47337 * 299.99981 * 5 4 2 32 32 H 1.08990 * 109.47491 * 60.00625 * 5 4 2 33 33 H 0.97000 * 119.99453 * 179.97438 * 9 8 6 34 34 H 1.00903 * 110.99660 * 151.04837 * 14 2 1 35 35 H 1.09002 * 109.47153 * 175.00107 * 17 15 14 36 36 H 1.09001 * 109.46832 * 55.00298 * 17 15 14 37 37 H 0.96701 * 113.99881 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.99105 * 359.97438 * 20 19 15 39 39 H 1.07999 * 119.97862 * 180.27577 * 21 20 19 40 40 H 1.07999 * 119.99116 * 179.74828 * 22 21 20 41 41 H 1.07996 * 120.01361 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3688 -1.8039 -3.2134 8 6 5.4185 -1.3603 -2.8156 9 7 5.8569 -1.9804 -3.8894 10 14 6.6266 -0.5298 -1.6579 11 1 7.0613 -1.4975 -0.6187 12 1 7.8089 -0.0647 -2.4267 13 1 5.9700 0.6329 -1.0081 14 7 2.0196 -0.6926 1.1995 15 6 2.0825 0.2226 2.3469 16 1 1.2576 0.9329 2.2907 17 6 3.4111 0.9808 2.3224 18 8 4.4880 0.0611 2.5130 19 6 1.9786 -0.5677 3.6259 20 6 2.3533 -1.8979 3.6490 21 6 2.2636 -2.6214 4.8234 22 6 1.7881 -2.0187 5.9734 23 6 1.4074 -0.6905 5.9513 24 6 1.5024 0.0369 4.7767 25 9 1.1301 1.3354 4.7537 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4259 33 1 6.8076 -2.0060 -4.0804 34 1 2.9173 -1.1206 1.0287 35 1 3.4210 1.7225 3.1212 36 1 3.5263 1.4810 1.3608 37 1 5.3627 0.4734 2.5092 38 1 2.7203 -2.3711 2.7503 39 1 2.5608 -3.6595 4.8418 40 1 1.7145 -2.5860 6.8894 41 1 1.0365 -0.2198 6.8497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -81.290572 kcal Electronic energy + Delta-G solvation = -22629.819768 eV Core-core repulsion = 19230.593141 eV Total energy + Delta-G solvation = -3399.226627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.91360 -39.48975 -37.76482 -36.13198 -33.66810 -32.47538 -30.53006 -30.29726 -29.28340 -27.27085 -25.28238 -23.55938 -22.64367 -21.21834 -20.47836 -19.69358 -17.73345 -17.33501 -16.78070 -16.39959 -15.94569 -15.67061 -15.31538 -15.00468 -14.47220 -14.24192 -14.03247 -13.70965 -13.19042 -13.10158 -12.72369 -12.65952 -12.44904 -12.31368 -12.08280 -11.81582 -11.53944 -11.39264 -11.17949 -11.03675 -10.92317 -10.54982 -10.04103 -9.95730 -9.76984 -9.45768 -9.18921 -8.87913 -8.64960 -8.54996 -8.16175 -6.05172 -4.02879 1.17502 1.29039 3.28782 3.35163 3.36959 3.62621 4.06785 4.26606 4.43401 4.50687 4.65080 4.81976 4.98447 5.12053 5.24468 5.27708 5.32392 5.37219 5.41759 5.52561 5.54761 5.67450 5.80350 5.93114 6.03869 6.11606 6.14965 6.23078 6.34269 6.42029 6.44677 6.53433 6.71810 6.84742 6.92490 7.25570 7.27629 7.48050 7.62504 7.74162 7.79891 8.53583 9.00535 9.57438 11.08441 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.004902 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.730775 B = 5710.695327 C = 6147.166069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.904 5.904 10 Si 0.882 3.118 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.269 1.269 14 N -0.676 5.676 15 C 0.128 3.872 16 H 0.097 0.903 17 C 0.049 3.951 18 O -0.561 6.561 19 C -0.087 4.087 20 C -0.049 4.049 21 C -0.134 4.134 22 C -0.100 4.100 23 C -0.161 4.161 24 C 0.090 3.910 25 F -0.144 7.144 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.361 0.639 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.379 0.621 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 4.411 19.225 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.710 3.290 11 H -0.201 1.201 12 H -0.216 1.216 13 H -0.194 1.194 14 N -0.311 5.311 15 C 0.018 3.982 16 H 0.115 0.885 17 C -0.031 4.031 18 O -0.366 6.366 19 C -0.088 4.088 20 C -0.067 4.067 21 C -0.153 4.153 22 C -0.119 4.119 23 C -0.180 4.180 24 C 0.071 3.929 25 F -0.123 7.123 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.157 0.843 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.835 3.732 19.288 21.541 hybrid contribution 1.943 1.667 0.289 2.577 sum -6.892 5.399 19.577 21.446 Atomic orbital electron populations 1.21802 0.95322 1.02066 1.00313 1.21691 0.94896 0.96079 0.90397 0.94409 1.21659 0.98131 1.00141 0.94445 1.19600 0.91860 0.96387 0.97278 1.21132 0.92909 1.34188 1.07367 0.91024 1.25040 0.98423 0.94953 0.95088 1.69920 1.14560 1.43489 1.26314 0.86745 0.80698 0.80380 0.81209 1.20122 1.21640 1.19387 1.60649 1.35271 1.31330 1.03826 1.20451 0.95129 0.93159 0.89492 0.88479 1.22844 0.88448 0.91933 0.99892 1.86458 1.17119 1.37001 1.96052 1.19712 1.00270 0.95565 0.93284 1.20934 0.95126 0.92390 0.98282 1.21257 1.00703 1.00474 0.92821 1.20938 0.98432 0.93875 0.98614 1.20989 1.04682 0.95428 0.96884 1.17568 1.01733 0.78715 0.94924 1.91454 1.89391 1.34286 1.97182 0.92759 0.92080 0.93777 0.91777 0.92037 0.97221 0.96897 0.92788 0.81566 0.93609 0.92817 0.77388 0.84344 0.85571 0.85561 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.40 37.16 0.35 -1.56 16 2 C 0.08 1.26 2.45 -67.71 -0.17 1.10 16 3 H 0.04 0.61 7.10 -51.93 -0.37 0.24 16 4 C -0.11 -2.06 4.74 -26.73 -0.13 -2.18 16 5 C -0.01 -0.32 3.87 -27.88 -0.11 -0.43 16 6 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 7 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 10 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 N -0.68 -10.60 5.05 -100.94 -0.51 -11.11 16 15 C 0.13 1.82 2.22 -68.86 -0.15 1.66 16 16 H 0.10 1.34 6.76 -51.93 -0.35 0.98 16 17 C 0.05 0.66 6.68 37.16 0.25 0.91 16 18 O -0.56 -7.99 12.30 -35.23 -0.43 -8.43 16 19 C -0.09 -1.20 4.66 -104.55 -0.49 -1.68 16 20 C -0.05 -0.66 9.07 -39.59 -0.36 -1.02 16 21 C -0.13 -1.51 10.04 -39.58 -0.40 -1.91 16 22 C -0.10 -1.02 10.04 -39.59 -0.40 -1.42 16 23 C -0.16 -1.78 10.03 -39.51 -0.40 -2.18 16 24 C 0.09 1.17 7.24 -39.42 -0.29 0.89 16 25 F -0.14 -1.91 16.57 2.25 0.04 -1.88 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.01 0.23 7.20 -51.93 -0.37 -0.15 16 32 H 0.01 0.30 5.85 -51.93 -0.30 -0.01 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.36 6.31 5.11 -39.29 -0.20 6.11 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.77 7.38 -51.93 -0.38 0.38 16 37 H 0.38 4.08 9.12 45.56 0.42 4.50 16 38 H 0.14 1.98 6.89 -52.49 -0.36 1.61 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -31.30 335.69 -7.73 -39.03 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.28 Total: 8.55 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.71 Total: -21.01 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.26 Total: -38.22 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.43 Total: -8.43 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.30 -7.73 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.256 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds