Wall clock time and date at job start Tue Mar 31 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47322 * 2 1 4 4 C 1.53004 * 109.47327 * 239.99583 * 2 1 3 5 5 C 1.52997 * 109.47001 * 175.00109 * 4 2 1 6 6 C 1.50705 * 109.47041 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99671 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00188 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99945 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99898 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46682 * 90.00388 * 10 8 6 12 12 H 1.48494 * 109.46967 * 209.99835 * 10 8 6 13 13 H 1.48501 * 109.47183 * 330.00333 * 10 8 6 14 14 N 1.46905 * 109.46776 * 120.00219 * 2 1 3 15 15 C 1.46904 * 110.99601 * 274.99482 * 14 2 1 16 16 H 1.08998 * 109.47225 * 35.00520 * 15 14 2 17 17 C 1.52997 * 109.47449 * 275.00171 * 15 14 2 18 18 O 1.42898 * 109.47319 * 295.00414 * 17 15 14 19 19 C 1.50705 * 109.46442 * 155.00340 * 15 14 2 20 20 C 1.38215 * 120.01515 * 24.72917 * 19 15 14 21 21 C 1.38224 * 120.02278 * 179.72158 * 20 19 15 22 22 C 1.38267 * 120.05390 * 0.55223 * 21 20 19 23 23 C 1.38180 * 120.02512 * 359.72381 * 22 21 20 24 24 C 1.38444 * 120.00820 * 204.99959 * 19 15 14 25 25 F 1.35103 * 120.02639 * 0.02866 * 24 19 15 26 26 H 1.09001 * 109.46869 * 60.00305 * 1 2 3 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46867 * 300.00192 * 1 2 3 29 29 H 1.08992 * 109.47332 * 295.00474 * 4 2 1 30 30 H 1.08999 * 109.46467 * 55.00444 * 4 2 1 31 31 H 1.09000 * 109.47337 * 299.99981 * 5 4 2 32 32 H 1.08990 * 109.47491 * 60.00625 * 5 4 2 33 33 H 0.97000 * 119.99453 * 179.97438 * 9 8 6 34 34 H 1.00903 * 110.99660 * 151.04837 * 14 2 1 35 35 H 1.09002 * 109.47153 * 175.00107 * 17 15 14 36 36 H 1.09001 * 109.46832 * 55.00298 * 17 15 14 37 37 H 0.96701 * 113.99881 * 180.02562 * 18 17 15 38 38 H 1.07998 * 119.99105 * 359.97438 * 20 19 15 39 39 H 1.07999 * 119.97862 * 180.27577 * 21 20 19 40 40 H 1.07999 * 119.99116 * 179.74828 * 22 21 20 41 41 H 1.07996 * 120.01361 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3688 -1.8039 -3.2134 8 6 5.4185 -1.3603 -2.8156 9 7 5.8569 -1.9804 -3.8894 10 14 6.6266 -0.5298 -1.6579 11 1 7.0613 -1.4975 -0.6187 12 1 7.8089 -0.0647 -2.4267 13 1 5.9700 0.6329 -1.0081 14 7 2.0196 -0.6926 1.1995 15 6 2.0825 0.2226 2.3469 16 1 1.2576 0.9329 2.2907 17 6 3.4111 0.9808 2.3224 18 8 4.4880 0.0611 2.5130 19 6 1.9786 -0.5677 3.6259 20 6 2.3533 -1.8979 3.6490 21 6 2.2636 -2.6214 4.8234 22 6 1.7881 -2.0187 5.9734 23 6 1.4074 -0.6905 5.9513 24 6 1.5024 0.0369 4.7767 25 9 1.1301 1.3354 4.7537 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4369 -1.3573 32 1 3.9995 -1.0729 -0.4259 33 1 6.8076 -2.0060 -4.0804 34 1 2.9173 -1.1206 1.0287 35 1 3.4210 1.7225 3.1212 36 1 3.5263 1.4810 1.3608 37 1 5.3627 0.4734 2.5092 38 1 2.7203 -2.3711 2.7503 39 1 2.5608 -3.6595 4.8418 40 1 1.7145 -2.5860 6.8894 41 1 1.0365 -0.2198 6.8497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:46 Heat of formation + Delta-G solvation = -102.265102 kcal Electronic energy + Delta-G solvation = -22630.729292 eV Core-core repulsion = 19230.593141 eV Total energy + Delta-G solvation = -3400.136151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.86560 -40.49187 -38.84828 -37.34929 -35.33193 -34.10225 -31.94079 -31.38554 -30.45151 -28.36216 -27.09506 -24.55486 -23.60994 -22.87380 -21.60959 -21.07664 -19.04759 -18.60423 -18.30895 -17.40984 -16.93964 -16.68251 -16.54006 -16.29372 -16.08083 -15.51723 -15.10100 -14.89860 -14.64853 -14.44099 -14.15301 -13.89992 -13.72583 -13.48369 -13.24926 -13.10455 -12.87926 -12.80597 -12.53356 -12.24999 -12.19606 -11.87684 -11.71222 -11.58617 -11.37795 -11.13577 -11.00225 -10.76070 -9.78070 -9.58533 -9.33470 -8.29527 -6.33475 0.27871 0.40714 1.33998 1.36631 1.47264 2.35432 2.72591 2.99853 3.06317 3.34972 3.46974 3.66187 3.90499 4.00715 4.11635 4.16747 4.24882 4.33235 4.37606 4.44227 4.45235 4.60953 4.61652 4.72582 4.88169 4.97250 5.01196 5.05642 5.10603 5.20616 5.28409 5.40031 5.48990 5.52076 5.56102 5.63119 5.66725 6.04635 6.18239 6.28838 6.41049 6.74759 6.75513 7.31058 8.87455 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.004902 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.730775 B = 5710.695327 C = 6147.166069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.042 0.958 4 C -0.098 4.098 5 C -0.004 4.004 6 C -0.531 4.531 7 H 0.030 0.970 8 C 0.003 3.997 9 N -0.953 5.953 10 Si 0.955 3.045 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.246 1.246 14 N -0.677 5.677 15 C 0.128 3.872 16 H 0.100 0.900 17 C 0.051 3.949 18 O -0.577 6.577 19 C -0.100 4.100 20 C -0.069 4.069 21 C -0.136 4.136 22 C -0.094 4.094 23 C -0.159 4.159 24 C 0.073 3.927 25 F -0.149 7.149 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.012 0.988 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.350 0.650 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.393 0.607 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 5.357 22.337 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.023 4.023 3 H 0.060 0.940 4 C -0.136 4.136 5 C -0.042 4.042 6 C -0.569 4.569 7 H 0.048 0.952 8 C -0.193 4.193 9 N -0.593 5.593 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.170 1.170 14 N -0.310 5.310 15 C 0.017 3.983 16 H 0.118 0.882 17 C -0.028 4.028 18 O -0.384 6.384 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.154 4.154 22 C -0.111 4.111 23 C -0.178 4.178 24 C 0.054 3.946 25 F -0.128 7.128 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.242 0.758 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.178 0.822 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.003 4.692 22.412 24.604 hybrid contribution 1.941 1.289 -0.706 2.435 sum -7.061 5.981 21.706 23.596 Atomic orbital electron populations 1.21736 0.93463 1.02143 1.01487 1.21584 0.96283 0.95546 0.88910 0.94020 1.21525 0.95704 1.00014 0.96385 1.19477 0.94297 0.95510 0.94878 1.21500 0.92649 1.34191 1.08570 0.95200 1.26043 1.00704 0.95685 0.96914 1.70082 1.15226 1.45388 1.28649 0.85592 0.77726 0.80005 0.78871 1.19005 1.21421 1.16992 1.60674 1.34487 1.31864 1.04022 1.20482 0.95620 0.93029 0.89121 0.88221 1.22799 0.88142 0.91900 0.99966 1.86433 1.18117 1.37795 1.96057 1.19692 1.01354 0.95790 0.93360 1.20921 0.96424 0.92676 0.98733 1.21533 1.00069 1.01322 0.92454 1.21324 0.96746 0.93675 0.99386 1.21338 1.03734 0.95746 0.96950 1.17759 1.02576 0.78798 0.95502 1.91437 1.89537 1.34610 1.97241 0.91727 0.92568 0.92434 0.92940 0.92419 0.96947 0.96244 0.92584 0.82869 0.92255 0.93521 0.75803 0.85978 0.83722 0.82195 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.40 71.98 0.68 -2.77 16 2 C 0.09 2.68 2.45 44.92 0.11 2.79 16 3 H 0.04 1.28 7.10 -2.39 -0.02 1.26 16 4 C -0.10 -3.84 4.74 30.59 0.15 -3.69 16 5 C 0.00 -0.19 3.87 29.85 0.12 -0.08 16 6 C -0.53 -30.91 9.66 25.60 0.25 -30.67 16 7 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 8 C 0.00 0.18 5.47 84.65 0.46 0.64 16 9 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 10 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 13 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 14 N -0.68 -20.73 5.05 -473.28 -2.39 -23.13 16 15 C 0.13 3.46 2.22 44.17 0.10 3.55 16 16 H 0.10 2.59 6.76 -2.39 -0.02 2.58 16 17 C 0.05 1.32 6.68 71.98 0.48 1.80 16 18 O -0.58 -15.49 12.30 -148.98 -1.83 -17.33 16 19 C -0.10 -2.64 4.66 -19.82 -0.09 -2.73 16 20 C -0.07 -1.78 9.07 22.26 0.20 -1.58 16 21 C -0.14 -2.74 10.04 22.27 0.22 -2.52 16 22 C -0.09 -1.58 10.04 22.26 0.22 -1.35 16 23 C -0.16 -3.03 10.03 22.31 0.22 -2.81 16 24 C 0.07 1.76 7.24 22.38 0.16 1.92 16 25 F -0.15 -3.70 16.57 44.97 0.75 -2.95 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.06 1.37 7.43 -2.39 -0.02 1.36 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 32 H 0.02 0.88 5.85 -2.39 -0.01 0.87 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 34 H 0.35 12.08 5.11 -89.69 -0.46 11.62 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.25 7.38 -2.39 -0.02 1.23 16 37 H 0.39 7.65 9.12 -74.06 -0.68 6.98 16 38 H 0.12 3.49 6.89 -2.91 -0.02 3.47 16 39 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.63 335.69 1.83 -66.79 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.15 Total: 27.99 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.28 Total: -37.49 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.09 Total: -83.22 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.83 Total: -17.33 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.75 Total: -2.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -68.63 1.83 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.473 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds