Wall clock time and date at job start Tue Mar 31 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47512 * 2 1 4 4 C 1.53002 * 109.47152 * 119.99994 * 2 1 3 5 5 C 1.52998 * 109.47050 * 184.99701 * 4 2 1 6 6 C 1.50704 * 109.46939 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00239 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99381 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00366 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46849 * 59.99998 * 10 8 6 12 12 H 1.48502 * 109.47050 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47075 * 299.99910 * 10 8 6 14 14 N 1.46906 * 109.47039 * 239.99786 * 2 1 3 15 15 C 1.46899 * 110.99572 * 80.35285 * 14 2 1 16 16 H 1.09000 * 109.47624 * 321.69926 * 15 14 2 17 17 C 1.53002 * 109.46897 * 201.70198 * 15 14 2 18 18 O 1.42901 * 109.46943 * 294.93640 * 17 15 14 19 19 C 1.50703 * 109.47377 * 81.70164 * 15 14 2 20 20 C 1.38220 * 120.00832 * 27.26134 * 19 15 14 21 21 C 1.38228 * 120.02130 * 179.72218 * 20 19 15 22 22 C 1.38268 * 120.05204 * 0.55158 * 21 20 19 23 23 C 1.38170 * 120.02351 * 359.72210 * 22 21 20 24 24 C 1.38435 * 120.01429 * 207.53064 * 19 15 14 25 25 F 1.35096 * 120.02606 * 0.02809 * 24 19 15 26 26 H 1.09001 * 109.47141 * 304.60967 * 1 2 3 27 27 H 1.09001 * 109.47325 * 64.60996 * 1 2 3 28 28 H 1.08998 * 109.47379 * 184.60634 * 1 2 3 29 29 H 1.09001 * 109.47224 * 305.00026 * 4 2 1 30 30 H 1.08998 * 109.46958 * 64.99736 * 4 2 1 31 31 H 1.09001 * 109.47372 * 300.00234 * 5 4 2 32 32 H 1.09000 * 109.46853 * 60.00590 * 5 4 2 33 33 H 0.97001 * 119.99450 * 180.02562 * 9 8 6 34 34 H 1.00899 * 110.99889 * 204.30383 * 14 2 1 35 35 H 1.08993 * 109.47253 * 54.93491 * 17 15 14 36 36 H 1.09002 * 109.47059 * 174.93674 * 17 15 14 37 37 H 0.96700 * 113.99782 * 180.02562 * 18 17 15 38 38 H 1.08002 * 119.99229 * 359.97438 * 20 19 15 39 39 H 1.08003 * 119.97479 * 180.27916 * 21 20 19 40 40 H 1.07999 * 119.98452 * 179.75083 * 22 21 20 41 41 H 1.07999 * 120.01268 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3136 6 6 4.0671 -1.3232 2.5445 7 1 3.3686 -1.8037 3.2135 8 6 5.4183 -1.3594 2.8164 9 7 6.2688 -0.7747 2.0012 10 14 6.0409 -2.2399 4.3416 11 1 5.6486 -3.6709 4.2818 12 1 7.5209 -2.1350 4.4041 13 1 5.4483 -1.6142 5.5509 14 7 2.0196 -0.6926 -1.1995 15 6 1.9784 0.1919 -2.3716 16 1 1.0796 0.8072 -2.3312 17 6 1.9612 -0.6526 -3.6473 18 8 3.1918 -1.3704 -3.7600 19 6 3.1957 1.0804 -2.3737 20 6 4.3627 0.6554 -1.7671 21 6 5.4811 1.4677 -1.7738 22 6 5.4304 2.7108 -2.3772 23 6 4.2632 3.1399 -2.9793 24 6 3.1438 2.3247 -2.9782 25 9 2.0018 2.7435 -3.5662 26 1 -0.3633 0.5837 0.8458 27 1 -0.3634 0.4406 -0.9284 28 1 -0.3634 -1.0243 0.0825 29 1 1.6054 -0.2618 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8531 0.4369 1.3574 33 1 7.2195 -0.8005 2.1923 34 1 2.9496 -1.0557 -1.0530 35 1 1.1316 -1.3583 -3.6048 36 1 1.8401 -0.0011 -4.5128 37 1 3.2511 -1.9279 -4.5478 38 1 4.4020 -0.3133 -1.2912 39 1 6.3939 1.1331 -1.3035 40 1 6.3037 3.3462 -2.3783 41 1 4.2239 4.1107 -3.4509 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:49 Heat of formation + Delta-G solvation = -80.685102 kcal Electronic energy + Delta-G solvation = -22953.962373 eV Core-core repulsion = 19554.762001 eV Total energy + Delta-G solvation = -3399.200372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72113 -39.42913 -37.25064 -36.18292 -33.54583 -32.36091 -30.28681 -29.82003 -28.85675 -27.42038 -25.01003 -23.27718 -22.35092 -21.48409 -20.19231 -19.50483 -17.77459 -17.19948 -16.33635 -16.10361 -15.82551 -15.44930 -15.00816 -14.74961 -14.52731 -14.28384 -13.73429 -13.53036 -13.10129 -12.94681 -12.50415 -12.33899 -12.25949 -11.98483 -11.76703 -11.54286 -11.31569 -11.19643 -10.97288 -10.86350 -10.70131 -10.47827 -10.24619 -9.84088 -9.73180 -9.25208 -9.01145 -8.62218 -8.35455 -8.33802 -8.05878 -5.99746 -4.00838 1.44718 1.54057 3.34017 3.38180 3.41153 3.91362 4.41910 4.44290 4.46905 4.52308 4.84457 5.00831 5.30211 5.33663 5.36764 5.49721 5.54745 5.57053 5.62929 5.70597 5.79382 5.86966 5.97732 6.12476 6.23212 6.32934 6.37874 6.39772 6.51336 6.54516 6.71725 6.83986 6.93070 7.10316 7.20845 7.47793 7.63990 7.78822 7.82637 7.91461 7.99877 8.43891 9.04543 9.62799 11.11150 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.005642 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.419127 B = 4961.502359 C = 5725.150687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.037 0.963 4 C -0.114 4.114 5 C 0.023 3.977 6 C -0.520 4.520 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.672 5.672 15 C 0.128 3.872 16 H 0.096 0.904 17 C 0.094 3.906 18 O -0.561 6.561 19 C -0.137 4.137 20 C -0.058 4.058 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.162 4.162 24 C 0.088 3.912 25 F -0.147 7.147 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.360 0.640 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.373 0.627 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 4.586 -12.698 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.055 0.945 4 C -0.152 4.152 5 C -0.014 4.014 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.308 5.308 15 C 0.017 3.983 16 H 0.114 0.886 17 C 0.015 3.985 18 O -0.365 6.365 19 C -0.140 4.140 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.181 4.181 24 C 0.068 3.932 25 F -0.125 7.125 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.219 0.781 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.546 4.627 -12.291 14.674 hybrid contribution 0.899 0.073 0.422 0.996 sum -5.646 4.700 -11.870 13.959 Atomic orbital electron populations 1.21815 0.95719 1.01739 1.00245 1.21648 0.94459 0.96271 0.90716 0.94485 1.21814 0.99840 0.99410 0.94134 1.19157 0.88656 0.96815 0.96773 1.21196 0.91943 1.34325 1.08331 0.92827 1.24983 0.97060 0.95581 0.96604 1.69935 1.02303 1.44019 1.36937 0.86690 0.77544 0.80291 0.83647 1.20286 1.21358 1.20380 1.60811 1.32694 1.34732 1.02582 1.20590 0.94510 0.91440 0.91801 0.88630 1.22139 0.86812 0.94072 0.95462 1.86572 1.37778 1.63566 1.48602 1.20630 0.98559 0.94182 1.00633 1.21106 0.90942 1.00375 0.95248 1.21330 0.99499 0.93923 0.98360 1.20985 0.97091 0.96436 0.97281 1.20988 0.92828 1.00278 1.04015 1.17513 0.82603 0.94165 0.98905 1.91428 1.48657 1.90348 1.82102 0.92973 0.93762 0.92290 0.92726 0.92418 0.96625 0.96877 0.93070 0.81477 0.92533 0.94048 0.78092 0.84105 0.84824 0.85538 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.38 37.16 0.35 -1.70 16 2 C 0.08 1.40 2.50 -67.71 -0.17 1.23 16 3 H 0.04 0.71 7.55 -51.93 -0.39 0.32 16 4 C -0.11 -2.37 4.77 -26.73 -0.13 -2.50 16 5 C 0.02 0.57 4.75 -27.88 -0.13 0.44 16 6 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 10 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.67 -11.57 5.87 -100.95 -0.59 -12.16 16 15 C 0.13 1.96 2.27 -68.86 -0.16 1.81 16 16 H 0.10 1.42 6.33 -51.93 -0.33 1.10 16 17 C 0.09 1.22 6.87 37.16 0.26 1.48 16 18 O -0.56 -7.64 12.78 -35.23 -0.45 -8.09 16 19 C -0.14 -2.27 4.15 -104.55 -0.43 -2.70 16 20 C -0.06 -1.05 8.87 -39.59 -0.35 -1.41 16 21 C -0.11 -1.90 10.04 -39.57 -0.40 -2.30 16 22 C -0.10 -1.43 10.04 -39.60 -0.40 -1.83 16 23 C -0.16 -2.30 10.03 -39.52 -0.40 -2.70 16 24 C 0.09 1.37 7.24 -39.42 -0.29 1.09 16 25 F -0.15 -2.20 16.52 2.25 0.04 -2.16 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.60 7.00 -51.93 -0.36 0.24 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.40 5.09 -51.93 -0.26 0.14 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.36 6.96 4.23 -39.29 -0.17 6.79 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.37 3.28 9.12 45.56 0.42 3.70 16 38 H 0.14 2.85 4.54 -52.49 -0.24 2.61 16 39 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 335.89 15.07 5.06 5.06 Total: -1.00 -30.03 335.89 -7.99 -38.02 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.11 Total: 10.23 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -2.65 Total: -22.36 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.14 Total: -37.20 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.45 Total: -8.09 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.03 -7.99 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.666 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds