Wall clock time and date at job start Tue Mar 31 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 O 1.42898 * 109.47482 * 64.99642 * 16 15 14 18 18 C 1.35892 * 117.00352 * 179.97438 * 17 16 15 19 19 C 1.38768 * 120.04263 * 359.72452 * 18 17 16 20 20 C 1.38138 * 119.99645 * 179.74736 * 19 18 17 21 21 C 1.38246 * 120.07576 * 0.52815 * 20 19 18 22 22 C 1.38480 * 120.08842 * 359.75178 * 21 20 19 23 23 F 1.35095 * 119.99745 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.00113 * 359.97401 * 22 21 20 25 25 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 28 28 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 29 29 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 33 33 H 1.00904 * 110.99899 * 38.96062 * 14 2 1 34 34 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 35 35 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 36 36 H 1.09003 * 109.47018 * 185.00404 * 16 15 14 37 37 H 1.09006 * 109.47128 * 304.99569 * 16 15 14 38 38 H 1.08005 * 120.00321 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.96155 * 180.27693 * 20 19 18 40 40 H 1.08002 * 119.95582 * 179.76523 * 21 20 19 41 41 H 1.08003 * 120.03555 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 6.2692 -0.7764 -1.9999 10 14 6.0413 -2.2416 -4.3403 11 1 4.8914 -2.8131 -5.0861 12 1 6.7647 -1.2776 -5.2078 13 1 6.9630 -3.3347 -3.9391 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 8 3.9447 -0.9483 3.3478 18 6 4.5543 -1.6369 4.3482 19 6 3.8704 -1.9020 5.5262 20 6 4.4893 -2.6066 6.5405 21 6 5.7936 -3.0387 6.3880 22 6 6.4812 -2.7709 5.2162 23 9 7.7559 -3.1936 5.0694 24 6 5.8626 -2.0703 4.1956 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6054 -0.2617 -2.1370 29 1 1.7518 -1.7715 -1.2056 30 1 3.9995 -1.0726 -0.4260 31 1 3.8532 0.4372 -1.3573 32 1 7.2198 -0.8022 -2.1910 33 1 1.4497 -1.4979 1.4100 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5589 0.1213 4.4453 37 1 1.9710 -1.4082 3.7501 38 1 2.8527 -1.5615 5.6482 39 1 3.9550 -2.8165 7.4552 40 1 6.2769 -3.5861 7.1838 41 1 6.3983 -1.8615 3.2813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:25 Heat of formation + Delta-G solvation = -72.055665 kcal Electronic energy + Delta-G solvation = -21429.883715 eV Core-core repulsion = 18031.057543 eV Total energy + Delta-G solvation = -3398.826172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90509 -40.07896 -37.71759 -36.78844 -33.39408 -32.08739 -30.83261 -29.82345 -29.19287 -27.47478 -25.00666 -23.32927 -22.80099 -21.48580 -21.22886 -19.75788 -18.63078 -16.62879 -16.27756 -16.17466 -16.07847 -16.01245 -15.53805 -15.02035 -14.66049 -14.34406 -14.00632 -13.84322 -13.58740 -12.89065 -12.75493 -12.53196 -12.42417 -12.21116 -12.01801 -11.93718 -11.54071 -11.32288 -11.12842 -10.93031 -10.84265 -10.75492 -10.38395 -10.14087 -9.58388 -9.16407 -8.92747 -8.83229 -8.30671 -8.17799 -7.88287 -5.82257 -3.83421 1.06995 1.25402 3.10359 3.40228 3.47435 3.51243 3.54003 4.30498 4.36775 4.59077 4.62522 4.86699 4.93153 4.96692 5.04148 5.20319 5.27617 5.34356 5.37279 5.51231 5.53062 5.55821 5.66146 5.85191 5.92052 6.04535 6.08457 6.17005 6.24975 6.25864 6.40750 6.67189 6.69402 6.91533 7.32984 7.40693 7.50393 7.78212 7.91074 8.14453 8.32016 8.63745 9.26126 9.78951 11.28699 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004527 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.600587 B = 6182.992821 C = 8340.348046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.665 5.665 15 C 0.059 3.941 16 C 0.064 3.936 17 O -0.281 6.281 18 C 0.170 3.830 19 C -0.228 4.228 20 C -0.054 4.054 21 C -0.202 4.202 22 C 0.139 3.861 23 F -0.135 7.135 24 C -0.187 4.187 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.006 0.994 32 H 0.257 0.743 33 H 0.334 0.666 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -0.307 18.451 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.295 5.295 15 C -0.070 4.070 16 C -0.012 4.012 17 O -0.192 6.192 18 C 0.122 3.878 19 C -0.247 4.247 20 C -0.072 4.072 21 C -0.221 4.221 22 C 0.120 3.880 23 F -0.114 7.114 24 C -0.207 4.207 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.698 -0.137 18.099 19.669 hybrid contribution -0.459 -0.482 -0.512 0.839 sum -8.157 -0.619 17.587 19.397 Atomic orbital electron populations 1.22551 0.98665 1.01527 1.01238 1.21756 0.90770 0.98431 0.91615 0.90935 1.21621 1.00748 0.98298 0.92893 1.19004 0.88196 0.96457 0.97172 1.21381 0.91842 1.33962 1.08454 0.93149 1.24991 0.97154 0.95802 0.96437 1.69999 1.02064 1.44418 1.36788 0.86655 0.78825 0.79576 0.83625 1.19916 1.21205 1.21135 1.60463 1.57787 1.08596 1.02690 1.22013 0.98880 0.96227 0.89907 1.22923 0.81310 0.98488 0.98462 1.86367 1.27515 1.67588 1.37759 1.18726 0.91432 0.90455 0.87150 1.21305 1.01620 1.07026 0.94723 1.20705 0.93520 0.94830 0.98158 1.20972 0.96269 1.07063 0.97789 1.17312 0.79398 0.96732 0.94587 1.91515 1.35980 1.87814 1.96073 1.20439 0.94584 1.04381 1.01285 0.92175 0.92779 0.93847 0.93589 0.93536 0.94636 0.97583 0.93344 0.84847 0.89657 0.93674 0.91781 0.92095 0.85086 0.85063 0.84945 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.16 37.16 0.34 -1.98 16 2 C 0.08 1.38 2.59 -67.71 -0.18 1.20 16 3 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 4 C -0.10 -2.04 4.83 -26.73 -0.13 -2.16 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.99 13.29 55.43 0.74 -27.26 16 10 Si 0.88 22.49 29.54 -169.99 -5.02 17.47 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 N -0.66 -10.43 5.65 -106.73 -0.60 -11.03 16 15 C 0.06 0.75 5.87 -3.83 -0.02 0.72 16 16 C 0.06 0.73 5.02 37.16 0.19 0.91 16 17 O -0.28 -4.37 10.08 -19.40 -0.20 -4.57 16 18 C 0.17 2.39 6.68 -39.23 -0.26 2.13 16 19 C -0.23 -2.48 9.04 -39.42 -0.36 -2.84 16 20 C -0.05 -0.52 10.04 -39.61 -0.40 -0.92 16 21 C -0.20 -2.20 10.02 -39.49 -0.40 -2.60 16 22 C 0.14 1.89 7.30 -39.44 -0.29 1.60 16 23 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 24 C -0.19 -2.82 9.97 -39.37 -0.39 -3.21 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.33 4.68 8.47 -39.29 -0.33 4.35 16 34 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.05 0.45 7.44 -51.93 -0.39 0.07 16 36 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 37 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -33.11 346.60 -8.64 -41.75 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.38 Total: 0.82 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.44 Total: -20.50 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.13 Total: -38.29 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.11 -8.64 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.307 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds