Wall clock time and date at job start Tue Mar 31 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 O 1.42898 * 109.47482 * 64.99642 * 16 15 14 18 18 C 1.35892 * 117.00352 * 179.97438 * 17 16 15 19 19 C 1.38768 * 120.04263 * 359.72452 * 18 17 16 20 20 C 1.38138 * 119.99645 * 179.74736 * 19 18 17 21 21 C 1.38246 * 120.07576 * 0.52815 * 20 19 18 22 22 C 1.38480 * 120.08842 * 359.75178 * 21 20 19 23 23 F 1.35095 * 119.99745 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.00113 * 359.97401 * 22 21 20 25 25 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 28 28 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 29 29 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 33 33 H 1.00904 * 110.99899 * 38.96062 * 14 2 1 34 34 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 35 35 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 36 36 H 1.09003 * 109.47018 * 185.00404 * 16 15 14 37 37 H 1.09006 * 109.47128 * 304.99569 * 16 15 14 38 38 H 1.08005 * 120.00321 * 0.02562 * 19 18 17 39 39 H 1.07998 * 119.96155 * 180.27693 * 20 19 18 40 40 H 1.08002 * 119.95582 * 179.76523 * 21 20 19 41 41 H 1.08003 * 120.03555 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 6.2692 -0.7764 -1.9999 10 14 6.0413 -2.2416 -4.3403 11 1 4.8914 -2.8131 -5.0861 12 1 6.7647 -1.2776 -5.2078 13 1 6.9630 -3.3347 -3.9391 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 8 3.9447 -0.9483 3.3478 18 6 4.5543 -1.6369 4.3482 19 6 3.8704 -1.9020 5.5262 20 6 4.4893 -2.6066 6.5405 21 6 5.7936 -3.0387 6.3880 22 6 6.4812 -2.7709 5.2162 23 9 7.7559 -3.1936 5.0694 24 6 5.8626 -2.0703 4.1956 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6054 -0.2617 -2.1370 29 1 1.7518 -1.7715 -1.2056 30 1 3.9995 -1.0726 -0.4260 31 1 3.8532 0.4372 -1.3573 32 1 7.2198 -0.8022 -2.1910 33 1 1.4497 -1.4979 1.4100 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5589 0.1213 4.4453 37 1 1.9710 -1.4082 3.7501 38 1 2.8527 -1.5615 5.6482 39 1 3.9550 -2.8165 7.4552 40 1 6.2769 -3.5861 7.1838 41 1 6.3983 -1.8615 3.2813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:25 Heat of formation + Delta-G solvation = -93.233183 kcal Electronic energy + Delta-G solvation = -21430.802041 eV Core-core repulsion = 18031.057543 eV Total energy + Delta-G solvation = -3399.744498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.98440 -41.05562 -38.83667 -37.94786 -35.37149 -33.62554 -31.90956 -31.13094 -30.50817 -28.51723 -26.97402 -24.35311 -23.77460 -23.16154 -22.34751 -21.33313 -19.60892 -18.37859 -17.63846 -17.22157 -17.17549 -17.04937 -16.63953 -16.53976 -16.04988 -15.89538 -15.10043 -14.91514 -14.66652 -14.47265 -14.19436 -13.85274 -13.67013 -13.36892 -13.25771 -13.06306 -12.91886 -12.87644 -12.70086 -12.39797 -12.29312 -11.97554 -11.75628 -11.59387 -11.51981 -11.20428 -10.94085 -10.49900 -9.90992 -9.26102 -9.06069 -8.14041 -6.25165 0.11734 0.32115 1.37476 1.38904 1.51786 2.17257 2.42592 2.61124 3.18030 3.28229 3.36266 3.76017 3.99581 4.01766 4.07268 4.11507 4.19663 4.29610 4.34464 4.42786 4.45999 4.52357 4.61310 4.79996 4.88209 5.01033 5.02284 5.07264 5.11889 5.13491 5.24774 5.31386 5.33839 5.48051 5.58835 5.76965 5.88940 6.04292 6.27276 6.34182 6.49658 6.70050 6.96109 7.43249 8.97342 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004527 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.600587 B = 6182.992821 C = 8340.348046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.058 0.942 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.281 1.281 14 N -0.694 5.694 15 C 0.061 3.939 16 C 0.060 3.940 17 O -0.323 6.323 18 C 0.150 3.850 19 C -0.216 4.216 20 C -0.040 4.040 21 C -0.194 4.194 22 C 0.119 3.881 23 F -0.148 7.148 24 C -0.225 4.225 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.001 0.999 31 H -0.027 1.027 32 H 0.260 0.740 33 H 0.343 0.657 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 -1.148 20.146 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.207 1.207 14 N -0.326 5.326 15 C -0.068 4.068 16 C -0.015 4.015 17 O -0.237 6.237 18 C 0.104 3.896 19 C -0.235 4.235 20 C -0.058 4.058 21 C -0.213 4.213 22 C 0.100 3.900 23 F -0.126 7.126 24 C -0.245 4.245 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.019 0.981 31 H -0.008 1.008 32 H 0.068 0.932 33 H 0.163 0.837 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.181 0.819 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.386 -0.977 19.800 22.380 hybrid contribution 0.381 -0.202 -0.985 1.075 sum -10.005 -1.178 18.816 21.343 Atomic orbital electron populations 1.22379 0.94934 1.02554 1.02699 1.21503 0.93542 0.96767 0.90083 0.92343 1.21456 0.96263 0.99061 0.95844 1.18813 0.92499 0.93587 0.94927 1.21862 0.92508 1.34246 1.09383 0.92564 1.25989 0.97441 0.96543 1.00054 1.70160 1.02477 1.45817 1.39022 0.85458 0.78460 0.78280 0.79202 1.18378 1.20281 1.20660 1.60297 1.58804 1.09884 1.03644 1.22056 1.00240 0.95128 0.89346 1.23175 0.79761 0.99780 0.98751 1.86314 1.29683 1.68298 1.39373 1.18905 0.91215 0.91178 0.88342 1.21666 1.02696 1.05942 0.93182 1.21262 0.92777 0.92593 0.99120 1.21356 0.96813 1.06258 0.96867 1.17584 0.79289 0.97572 0.95582 1.91472 1.36868 1.88048 1.96259 1.20411 0.95957 1.07116 1.01037 0.91881 0.91931 0.91210 0.93255 0.93565 0.98104 1.00842 0.93168 0.83745 0.92329 0.89912 0.88670 0.89987 0.81866 0.80437 0.82224 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.16 71.98 0.66 -3.19 16 2 C 0.09 2.97 2.59 44.92 0.12 3.09 16 3 H 0.06 2.06 7.80 -2.39 -0.02 2.04 16 4 C -0.09 -3.76 4.83 30.59 0.15 -3.61 16 5 C 0.04 2.21 4.86 29.85 0.15 2.35 16 6 C -0.54 -32.96 9.11 25.60 0.23 -32.73 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 9 N -0.93 -61.09 13.29 21.45 0.28 -60.80 16 10 Si 0.96 47.02 29.54 68.60 2.03 49.05 16 11 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 14 N -0.69 -21.81 5.65 -491.59 -2.78 -24.59 16 15 C 0.06 1.49 5.87 86.30 0.51 1.99 16 16 C 0.06 1.27 5.02 71.98 0.36 1.63 16 17 O -0.32 -10.51 10.08 -92.33 -0.93 -11.44 16 18 C 0.15 4.34 6.68 22.50 0.15 4.49 16 19 C -0.22 -4.13 9.04 22.37 0.20 -3.93 16 20 C -0.04 -0.62 10.04 22.25 0.22 -0.39 16 21 C -0.19 -3.84 10.02 22.33 0.22 -3.62 16 22 C 0.12 3.36 7.30 22.36 0.16 3.52 16 23 F -0.15 -4.51 17.27 44.97 0.78 -3.73 16 24 C -0.23 -7.43 9.97 22.41 0.22 -7.21 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 27 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 30 H 0.00 0.03 7.75 -2.39 -0.02 0.01 16 31 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 32 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.34 9.30 8.47 -89.69 -0.76 8.54 16 34 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.08 1.40 7.44 -2.39 -0.02 1.38 16 36 H 0.10 1.40 7.65 -2.39 -0.02 1.38 16 37 H 0.08 1.37 7.67 -2.38 -0.02 1.35 16 38 H 0.16 2.00 6.30 -2.91 -0.02 1.98 16 39 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -78.01 346.60 3.45 -74.56 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.25 Total: 14.30 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.82 Total: -37.34 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -2.49 Total: -85.39 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.93 Total: -11.44 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.01 3.45 -74.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.672 kcal (2) G-P(sol) polarization free energy of solvation -78.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds