Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47015 * 2 1 4 4 C 1.53005 * 109.47140 * 239.99476 * 2 1 3 5 5 C 1.52998 * 109.46838 * 175.00116 * 4 2 1 6 6 C 1.50705 * 109.46981 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00031 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99774 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00077 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47397 * 89.99579 * 10 8 6 12 12 H 1.48496 * 109.47143 * 210.00101 * 10 8 6 13 13 H 1.48500 * 109.47288 * 329.99692 * 10 8 6 14 14 N 1.46902 * 109.47111 * 119.99726 * 2 1 3 15 15 C 1.46906 * 110.99833 * 275.00231 * 14 2 1 16 16 C 1.53003 * 109.46734 * 179.97438 * 15 14 2 17 17 H 1.08999 * 109.46855 * 304.99751 * 16 15 14 18 18 O 1.42899 * 109.47091 * 65.00320 * 16 15 14 19 19 C 1.50701 * 109.46564 * 184.99823 * 16 15 14 20 20 C 1.38218 * 120.01214 * 264.97833 * 19 16 15 21 21 C 1.38226 * 120.02313 * 180.02562 * 20 19 16 22 22 C 1.38270 * 120.05340 * 359.97438 * 21 20 19 23 23 C 1.38175 * 120.02272 * 0.02562 * 22 21 20 24 24 C 1.38436 * 120.01384 * 85.00262 * 19 16 15 25 25 F 1.35106 * 120.02604 * 359.97438 * 24 19 16 26 26 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47447 * 299.99940 * 1 2 3 28 28 H 1.08998 * 109.47085 * 60.00660 * 1 2 3 29 29 H 1.09000 * 109.47241 * 294.99930 * 4 2 1 30 30 H 1.08996 * 109.47175 * 54.99979 * 4 2 1 31 31 H 1.09000 * 109.47053 * 299.99929 * 5 4 2 32 32 H 1.08996 * 109.47349 * 59.99970 * 5 4 2 33 33 H 0.96998 * 120.00245 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00345 * 151.04725 * 14 2 1 35 35 H 1.08995 * 109.46791 * 59.99881 * 15 14 2 36 36 H 1.09003 * 109.46640 * 299.99749 * 15 14 2 37 37 H 0.96697 * 114.00349 * 59.99369 * 18 16 15 38 38 H 1.08000 * 119.98639 * 0.02562 * 20 19 16 39 39 H 1.08003 * 119.97173 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.98208 * 180.27896 * 22 21 20 41 41 H 1.08001 * 120.00482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3688 -1.8039 -3.2134 8 6 5.4185 -1.3595 -2.8161 9 7 5.8568 -1.9795 -3.8899 10 14 6.6265 -0.5289 -1.6585 11 1 7.0621 -1.4967 -0.6199 12 1 7.8082 -0.0627 -2.4275 13 1 5.9696 0.6331 -1.0078 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5950 -0.5330 3.5745 17 1 1.9690 -1.4079 3.7501 18 8 3.9432 -0.9494 3.3489 19 6 2.5434 0.3715 4.7788 20 6 3.6664 1.0826 5.1580 21 6 3.6195 1.9118 6.2628 22 6 2.4494 2.0315 6.9897 23 6 1.3255 1.3216 6.6125 24 6 1.3715 0.4901 5.5061 25 9 0.2732 -0.2045 5.1364 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.7517 -1.7716 -1.2055 30 1 1.6054 -0.2620 -2.1370 31 1 3.8532 0.4368 -1.3573 32 1 3.9995 -1.0728 -0.4258 33 1 6.8075 -2.0052 -4.0810 34 1 2.9173 -1.1205 1.0289 35 1 1.0870 0.6164 2.5524 36 1 2.7589 1.0463 2.1181 37 1 4.5577 -0.2209 3.1852 38 1 4.5808 0.9902 4.5907 39 1 4.4974 2.4674 6.5581 40 1 2.4127 2.6832 7.8501 41 1 0.4116 1.4156 7.1802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -85.861843 kcal Electronic energy + Delta-G solvation = -21938.278255 eV Core-core repulsion = 18538.853402 eV Total energy + Delta-G solvation = -3399.424853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.13152 -39.80790 -37.85497 -36.46272 -33.25132 -32.21937 -31.27300 -30.81080 -29.59677 -27.12060 -25.27458 -23.34908 -22.91896 -21.39821 -21.07481 -19.61569 -18.26048 -17.04233 -16.94345 -16.76076 -15.92718 -15.76225 -15.45758 -15.12124 -14.53964 -14.38497 -14.30249 -13.83530 -13.42198 -13.18996 -12.88518 -12.68202 -12.47110 -12.37225 -12.23412 -11.90722 -11.62266 -11.57051 -11.38581 -11.15886 -10.97067 -10.60734 -10.26646 -9.94324 -9.76948 -9.44687 -9.30927 -9.17338 -8.95023 -8.53884 -8.13913 -6.03733 -4.01452 0.79575 0.85034 3.21504 3.29909 3.36335 3.37931 3.93329 4.04811 4.22369 4.41673 4.44596 4.56868 4.72116 4.91976 4.94348 5.03104 5.15766 5.29536 5.37739 5.45695 5.60029 5.64528 5.68704 5.73076 5.80636 5.85079 6.02779 6.06815 6.11841 6.25145 6.38910 6.43809 6.53041 6.73461 6.85928 7.25888 7.27823 7.44693 7.50305 7.76368 7.81327 8.55130 9.01915 9.58680 11.09944 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.004157 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.962087 B = 6733.450667 C = 7754.142590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.036 0.964 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.518 4.518 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.269 1.269 14 N -0.682 5.682 15 C 0.036 3.964 16 C 0.149 3.851 17 H 0.121 0.879 18 O -0.546 6.546 19 C -0.146 4.146 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.095 4.095 23 C -0.154 4.154 24 C 0.108 3.892 25 F -0.133 7.133 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.356 0.644 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.372 0.628 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 9.664 22.565 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.194 1.194 14 N -0.318 5.318 15 C -0.094 4.094 16 C 0.089 3.911 17 H 0.138 0.862 18 O -0.351 6.351 19 C -0.147 4.147 20 C -0.103 4.103 21 C -0.145 4.145 22 C -0.113 4.113 23 C -0.172 4.172 24 C 0.088 3.912 25 F -0.112 7.112 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.220 0.780 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.238 8.744 22.683 25.667 hybrid contribution 1.519 1.455 0.216 2.114 sum -6.719 10.198 22.898 25.952 Atomic orbital electron populations 1.21784 0.95403 1.02005 1.00261 1.21663 0.94944 0.95902 0.90422 0.94556 1.21662 0.98063 1.00174 0.94492 1.19610 0.91956 0.96421 0.97238 1.21129 0.92940 1.34190 1.07344 0.90992 1.25047 0.98426 0.94965 0.95107 1.69914 1.14577 1.43460 1.26314 0.86763 0.80771 0.80352 0.81283 1.20089 1.21480 1.19365 1.60519 1.35119 1.31990 1.04127 1.22581 1.01071 0.94187 0.91566 1.20833 0.84461 0.96559 0.89239 0.86161 1.86705 1.17843 1.37107 1.93481 1.20716 0.93490 1.01121 0.99411 1.20847 0.97543 0.94984 0.96916 1.21202 0.98491 0.99219 0.95606 1.21036 0.92162 0.98460 0.99606 1.21167 1.00545 0.98451 0.97082 1.17489 0.83188 0.94757 0.95731 1.91527 1.51484 1.77111 1.91073 0.92106 0.93816 0.92824 0.91764 0.92053 0.97100 0.97128 0.92765 0.82153 0.90430 0.95044 0.78004 0.84967 0.85173 0.85005 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.42 37.16 0.35 -1.62 16 2 C 0.08 1.33 2.65 -67.71 -0.18 1.15 16 3 H 0.04 0.61 7.80 -51.93 -0.40 0.21 16 4 C -0.11 -2.12 4.74 -26.73 -0.13 -2.25 16 5 C -0.01 -0.35 3.87 -27.88 -0.11 -0.46 16 6 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 7 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 10 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 N -0.68 -11.02 6.31 -106.72 -0.67 -11.69 16 15 C 0.04 0.49 5.14 -3.82 -0.02 0.47 16 16 C 0.15 1.87 3.22 -27.88 -0.09 1.78 16 17 H 0.12 1.66 7.79 -51.93 -0.40 1.25 16 18 O -0.55 -7.22 12.51 -35.23 -0.44 -7.66 16 19 C -0.15 -1.60 5.07 -104.56 -0.53 -2.13 16 20 C -0.08 -0.78 9.30 -39.59 -0.37 -1.15 16 21 C -0.13 -0.97 10.04 -39.57 -0.40 -1.37 16 22 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 23 C -0.15 -1.33 10.03 -39.52 -0.40 -1.73 16 24 C 0.11 1.18 7.24 -39.42 -0.29 0.89 16 25 F -0.13 -1.62 16.57 2.25 0.04 -1.58 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.01 0.26 7.20 -51.93 -0.37 -0.12 16 32 H 0.01 0.25 5.85 -51.93 -0.30 -0.06 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.36 6.35 6.03 -39.29 -0.24 6.11 16 35 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 36 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.37 3.76 7.33 45.56 0.33 4.10 16 38 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.07 337.86 -8.32 -40.40 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.46 Total: 6.65 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.98 Total: -20.90 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.10 Total: -39.04 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.44 Total: -7.66 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.07 -8.32 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.465 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds