Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47015 * 2 1 4 4 C 1.53005 * 109.47140 * 239.99476 * 2 1 3 5 5 C 1.52998 * 109.46838 * 175.00116 * 4 2 1 6 6 C 1.50705 * 109.46981 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00031 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99888 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99774 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00077 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47397 * 89.99579 * 10 8 6 12 12 H 1.48496 * 109.47143 * 210.00101 * 10 8 6 13 13 H 1.48500 * 109.47288 * 329.99692 * 10 8 6 14 14 N 1.46902 * 109.47111 * 119.99726 * 2 1 3 15 15 C 1.46906 * 110.99833 * 275.00231 * 14 2 1 16 16 C 1.53003 * 109.46734 * 179.97438 * 15 14 2 17 17 H 1.08999 * 109.46855 * 304.99751 * 16 15 14 18 18 O 1.42899 * 109.47091 * 65.00320 * 16 15 14 19 19 C 1.50701 * 109.46564 * 184.99823 * 16 15 14 20 20 C 1.38218 * 120.01214 * 264.97833 * 19 16 15 21 21 C 1.38226 * 120.02313 * 180.02562 * 20 19 16 22 22 C 1.38270 * 120.05340 * 359.97438 * 21 20 19 23 23 C 1.38175 * 120.02272 * 0.02562 * 22 21 20 24 24 C 1.38436 * 120.01384 * 85.00262 * 19 16 15 25 25 F 1.35106 * 120.02604 * 359.97438 * 24 19 16 26 26 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47447 * 299.99940 * 1 2 3 28 28 H 1.08998 * 109.47085 * 60.00660 * 1 2 3 29 29 H 1.09000 * 109.47241 * 294.99930 * 4 2 1 30 30 H 1.08996 * 109.47175 * 54.99979 * 4 2 1 31 31 H 1.09000 * 109.47053 * 299.99929 * 5 4 2 32 32 H 1.08996 * 109.47349 * 59.99970 * 5 4 2 33 33 H 0.96998 * 120.00245 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00345 * 151.04725 * 14 2 1 35 35 H 1.08995 * 109.46791 * 59.99881 * 15 14 2 36 36 H 1.09003 * 109.46640 * 299.99749 * 15 14 2 37 37 H 0.96697 * 114.00349 * 59.99369 * 18 16 15 38 38 H 1.08000 * 119.98639 * 0.02562 * 20 19 16 39 39 H 1.08003 * 119.97173 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.98208 * 180.27896 * 22 21 20 41 41 H 1.08001 * 120.00482 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.0672 -1.3234 -2.5443 7 1 3.3688 -1.8039 -3.2134 8 6 5.4185 -1.3595 -2.8161 9 7 5.8568 -1.9795 -3.8899 10 14 6.6265 -0.5289 -1.6585 11 1 7.0621 -1.4967 -0.6199 12 1 7.8082 -0.0627 -2.4275 13 1 5.9696 0.6331 -1.0078 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5950 -0.5330 3.5745 17 1 1.9690 -1.4079 3.7501 18 8 3.9432 -0.9494 3.3489 19 6 2.5434 0.3715 4.7788 20 6 3.6664 1.0826 5.1580 21 6 3.6195 1.9118 6.2628 22 6 2.4494 2.0315 6.9897 23 6 1.3255 1.3216 6.6125 24 6 1.3715 0.4901 5.5061 25 9 0.2732 -0.2045 5.1364 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.7517 -1.7716 -1.2055 30 1 1.6054 -0.2620 -2.1370 31 1 3.8532 0.4368 -1.3573 32 1 3.9995 -1.0728 -0.4258 33 1 6.8075 -2.0052 -4.0810 34 1 2.9173 -1.1205 1.0289 35 1 1.0870 0.6164 2.5524 36 1 2.7589 1.0463 2.1181 37 1 4.5577 -0.2209 3.1852 38 1 4.5808 0.9902 4.5907 39 1 4.4974 2.4674 6.5581 40 1 2.4127 2.6832 7.8501 41 1 0.4116 1.4156 7.1802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -107.850709 kcal Electronic energy + Delta-G solvation = -21939.231763 eV Core-core repulsion = 18538.853402 eV Total energy + Delta-G solvation = -3400.378361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.94409 -40.58138 -38.92885 -37.62810 -35.19217 -33.52317 -32.43003 -31.54573 -31.05160 -28.12736 -27.06467 -24.29686 -23.62242 -22.84118 -22.25727 -21.11358 -19.03816 -18.96334 -17.83871 -17.68678 -17.02506 -16.69763 -16.40698 -16.34758 -16.19070 -15.41524 -15.16454 -14.97764 -14.77543 -14.50110 -14.22715 -14.05267 -13.63846 -13.36536 -13.27160 -13.19614 -12.97156 -12.85428 -12.64403 -12.30577 -12.09077 -12.03107 -11.86392 -11.57697 -11.41310 -11.23527 -11.06838 -10.76421 -9.96471 -9.65870 -9.38388 -8.29579 -6.34101 0.12382 0.21640 1.34726 1.37711 1.48255 2.35955 2.56839 3.03126 3.06610 3.23743 3.37254 3.68458 3.79092 3.92491 3.98231 4.04631 4.18334 4.28272 4.35311 4.38077 4.41561 4.61284 4.69910 4.75278 4.86103 4.90456 4.96665 4.99718 5.05790 5.08798 5.19489 5.35157 5.38342 5.43656 5.49674 5.52709 5.66017 5.90757 6.14264 6.28226 6.41627 6.63537 6.73973 7.30344 8.87545 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.004157 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.962087 B = 6733.450667 C = 7754.142590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 H 0.041 0.959 4 C -0.099 4.099 5 C -0.007 4.007 6 C -0.533 4.533 7 H 0.028 0.972 8 C 0.001 3.999 9 N -0.953 5.953 10 Si 0.956 3.044 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.245 1.245 14 N -0.690 5.690 15 C 0.041 3.959 16 C 0.157 3.843 17 H 0.100 0.900 18 O -0.562 6.562 19 C -0.161 4.161 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.157 4.157 24 C 0.081 3.919 25 F -0.149 7.149 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.345 0.655 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.385 0.615 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 12.126 25.569 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.045 4.045 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.196 4.196 9 N -0.594 5.594 10 Si 0.778 3.222 11 H -0.189 1.189 12 H -0.211 1.211 13 H -0.168 1.168 14 N -0.324 5.324 15 C -0.088 4.088 16 C 0.097 3.903 17 H 0.118 0.882 18 O -0.370 6.370 19 C -0.163 4.163 20 C -0.111 4.111 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.176 4.176 24 C 0.062 3.938 25 F -0.128 7.128 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.235 0.765 38 H 0.163 0.837 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.618 11.220 25.699 29.058 hybrid contribution 1.288 0.661 -0.742 1.627 sum -6.330 11.881 24.957 28.356 Atomic orbital electron populations 1.21728 0.93583 1.02039 1.01532 1.21560 0.96333 0.95375 0.88933 0.94071 1.21533 0.95783 0.99907 0.96464 1.19514 0.94288 0.95726 0.94953 1.21496 0.92723 1.34325 1.08601 0.95329 1.26094 1.00761 0.95695 0.97012 1.70080 1.15292 1.45325 1.28683 0.85578 0.77731 0.79966 0.78879 1.18922 1.21108 1.16842 1.60552 1.34436 1.32870 1.04592 1.22589 1.01461 0.93921 0.90854 1.20585 0.83887 0.96066 0.89734 0.88226 1.86666 1.18332 1.38339 1.93617 1.20596 0.94460 1.01961 0.99256 1.21108 0.97357 0.94965 0.97717 1.21586 0.99609 0.98400 0.94622 1.21462 0.91323 0.97808 1.00059 1.21454 1.01920 0.97851 0.96354 1.17825 0.82953 0.95957 0.97087 1.91481 1.52212 1.77688 1.91388 0.92724 0.92337 0.91751 0.93164 0.92424 0.96580 0.96212 0.92517 0.83368 0.90201 0.94271 0.76519 0.83656 0.82429 0.81850 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.42 71.98 0.68 -2.91 16 2 C 0.09 2.80 2.65 44.92 0.12 2.92 16 3 H 0.04 1.30 7.80 -2.39 -0.02 1.28 16 4 C -0.10 -3.96 4.74 30.60 0.15 -3.82 16 5 C -0.01 -0.34 3.87 29.85 0.12 -0.23 16 6 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 7 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 8 C 0.00 0.05 5.47 84.66 0.46 0.51 16 9 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 10 Si 0.96 44.30 27.47 68.60 1.88 46.19 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 14 N -0.69 -21.67 6.31 -491.54 -3.10 -24.77 16 15 C 0.04 1.06 5.14 86.30 0.44 1.51 16 16 C 0.16 3.85 3.22 29.85 0.10 3.94 16 17 H 0.10 2.81 7.79 -2.39 -0.02 2.79 16 18 O -0.56 -14.24 12.51 -148.98 -1.86 -16.10 16 19 C -0.16 -3.33 5.07 -19.82 -0.10 -3.43 16 20 C -0.09 -1.48 9.30 22.26 0.21 -1.27 16 21 C -0.12 -1.45 10.04 22.27 0.22 -1.23 16 22 C -0.09 -0.98 10.04 22.26 0.22 -0.75 16 23 C -0.16 -2.37 10.03 22.31 0.22 -2.14 16 24 C 0.08 1.69 7.24 22.37 0.16 1.85 16 25 F -0.15 -3.63 16.57 44.97 0.75 -2.88 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.43 7.45 -2.39 -0.02 1.42 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.02 0.73 7.20 -2.39 -0.02 0.72 16 32 H 0.02 0.90 5.85 -2.39 -0.01 0.88 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.35 12.04 6.03 -89.70 -0.54 11.50 16 35 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 36 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 37 H 0.38 7.05 7.33 -74.06 -0.54 6.51 16 38 H 0.15 1.79 6.41 -2.91 -0.02 1.77 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -71.02 337.86 1.11 -69.91 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.10 Total: 24.45 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.25 Total: -36.24 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.80 Total: -85.33 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.86 Total: -16.10 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.75 Total: -2.88 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -71.02 1.11 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.938 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds