Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47289 * 2 1 4 4 C 1.52994 * 109.47412 * 120.00904 * 2 1 3 5 5 C 1.52998 * 109.47193 * 184.99664 * 4 2 1 6 6 C 1.50700 * 109.47425 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99915 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00517 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99731 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00227 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46793 * 90.00554 * 10 8 6 12 12 H 1.48506 * 109.47395 * 209.99751 * 10 8 6 13 13 H 1.48495 * 109.47741 * 330.00518 * 10 8 6 14 14 N 1.46903 * 109.46423 * 240.00547 * 2 1 3 15 15 C 1.46898 * 110.99964 * 85.00341 * 14 2 1 16 16 C 1.53007 * 109.47100 * 179.97438 * 15 14 2 17 17 H 1.09004 * 109.47109 * 59.99587 * 16 15 14 18 18 O 1.42896 * 109.46805 * 299.99741 * 16 15 14 19 19 C 1.50699 * 109.47150 * 179.97438 * 16 15 14 20 20 C 1.38216 * 120.01501 * 95.02128 * 19 16 15 21 21 C 1.38226 * 120.02514 * 179.97438 * 20 19 16 22 22 C 1.38265 * 120.05338 * 0.02562 * 21 20 19 23 23 C 1.38176 * 120.02279 * 359.74109 * 22 21 20 24 24 C 1.38436 * 120.00926 * 274.99491 * 19 16 15 25 25 F 1.35104 * 120.02854 * 0.02562 * 24 19 16 26 26 H 1.09002 * 109.46477 * 299.99292 * 1 2 3 27 27 H 1.08998 * 109.47654 * 59.99328 * 1 2 3 28 28 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47014 * 304.99319 * 4 2 1 30 30 H 1.09000 * 109.47760 * 64.99265 * 4 2 1 31 31 H 1.08997 * 109.47219 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47159 * 59.99945 * 5 4 2 33 33 H 0.97001 * 120.00046 * 179.97438 * 9 8 6 34 34 H 1.00906 * 110.99380 * 208.95149 * 14 2 1 35 35 H 1.08996 * 109.47359 * 59.99410 * 15 14 2 36 36 H 1.09003 * 109.46675 * 299.99156 * 15 14 2 37 37 H 0.96700 * 114.00060 * 299.99640 * 18 16 15 38 38 H 1.08001 * 119.98628 * 359.97438 * 20 19 16 39 39 H 1.08001 * 119.97063 * 179.97438 * 21 20 19 40 40 H 1.07993 * 119.98889 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01677 * 180.27805 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3134 6 6 4.0673 -1.3235 2.5441 7 1 3.3689 -1.8041 3.2132 8 6 5.4186 -1.3606 2.8153 9 7 6.2692 -0.7758 2.0003 10 14 6.0412 -2.2401 4.3411 11 1 6.3205 -3.6614 4.0137 12 1 7.2880 -1.5871 4.8149 13 1 5.0102 -2.1712 5.4076 14 7 2.0195 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 6 2.5960 -0.5326 -3.5744 17 1 1.9198 -1.3564 -3.8032 18 8 3.9010 -1.0484 -3.3045 19 6 2.6598 0.4061 -4.7515 20 6 3.8444 1.0475 -5.0610 21 6 3.9033 1.9081 -6.1410 22 6 2.7775 2.1289 -6.9127 23 6 1.5934 1.4851 -6.6081 24 6 1.5320 0.6259 -5.5238 25 9 0.3736 -0.0005 -5.2223 26 1 -0.3632 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7717 1.2054 31 1 3.9995 -1.0730 0.4257 32 1 3.8533 0.4368 1.3572 33 1 7.2198 -0.8015 2.1913 34 1 2.9172 -1.1205 -1.0289 35 1 2.7587 1.0463 -2.1182 36 1 1.0869 0.6165 -2.5524 37 1 4.5561 -0.3695 -3.0925 38 1 4.7243 0.8761 -4.4586 39 1 4.8293 2.4091 -6.3817 40 1 2.8248 2.8012 -7.7565 41 1 0.7153 1.6542 -7.2136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = -89.687893 kcal Electronic energy + Delta-G solvation = -21836.492739 eV Core-core repulsion = 18436.901976 eV Total energy + Delta-G solvation = -3399.590763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.05655 -39.69680 -37.71945 -36.28844 -33.22670 -32.11520 -31.11146 -30.68413 -29.19096 -27.00766 -25.06395 -23.25099 -22.82829 -21.38383 -21.20948 -19.49472 -18.15703 -16.90441 -16.80539 -16.43009 -15.81640 -15.62245 -15.33699 -14.94590 -14.53535 -14.39545 -14.24293 -13.80914 -13.32692 -12.95966 -12.72658 -12.50891 -12.35186 -12.22664 -12.09846 -11.67064 -11.49769 -11.40416 -11.15626 -11.02755 -10.90758 -10.49856 -10.39518 -10.03850 -9.74230 -9.26634 -9.20848 -9.02150 -8.85516 -8.34630 -7.97917 -6.00035 -4.01514 0.88935 0.94415 3.31016 3.33051 3.39087 3.42648 4.02315 4.17322 4.36165 4.46962 4.51831 4.67149 4.84926 5.03507 5.05045 5.16268 5.27139 5.36231 5.50453 5.56567 5.72766 5.75214 5.78869 5.85835 5.91663 5.95937 6.12426 6.17799 6.22069 6.38085 6.53364 6.55193 6.62335 6.92406 7.09851 7.47912 7.61031 7.64599 7.80863 7.94618 8.01269 8.43584 9.04820 9.62535 11.11292 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.003634 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.097916 B = 7703.351872 C = 8581.029270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.681 5.681 15 C 0.036 3.964 16 C 0.150 3.850 17 H 0.117 0.883 18 O -0.545 6.545 19 C -0.145 4.145 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.155 4.155 24 C 0.106 3.894 25 F -0.135 7.135 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.359 0.641 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.374 0.626 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 6.848 -17.893 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.318 5.318 15 C -0.094 4.094 16 C 0.090 3.910 17 H 0.135 0.865 18 O -0.350 6.350 19 C -0.146 4.146 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.173 4.173 24 C 0.087 3.913 25 F -0.113 7.113 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.182 0.818 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.223 0.777 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.354 6.034 -18.166 20.886 hybrid contribution 1.238 0.636 1.108 1.779 sum -7.116 6.670 -17.058 19.649 Atomic orbital electron populations 1.21796 0.95779 1.01779 1.00110 1.21611 0.94527 0.95990 0.90578 0.94604 1.21830 0.99704 0.99506 0.94198 1.19129 0.88773 0.96751 0.97027 1.21237 0.91958 1.34175 1.08288 0.92696 1.25013 0.97071 0.95603 0.96721 1.69955 1.02308 1.44169 1.37102 0.86600 0.78253 0.79815 0.83371 1.20624 1.21294 1.19923 1.60517 1.35462 1.31796 1.03976 1.22552 1.00879 0.94292 0.91658 1.20792 0.85769 0.94969 0.89433 0.86492 1.86692 1.19101 1.37549 1.91671 1.20750 0.93484 1.01129 0.99286 1.20879 0.96958 0.95103 0.97221 1.21206 0.98941 0.98804 0.95546 1.21023 0.92013 0.98798 0.99535 1.21150 0.99988 0.98612 0.97587 1.17493 0.81814 0.95736 0.96264 1.91517 1.46501 1.80531 1.92772 0.93016 0.93892 0.92287 0.92741 0.92391 0.96467 0.97084 0.93084 0.81762 0.95014 0.90664 0.77721 0.84796 0.85165 0.85071 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.41 37.16 0.35 -1.73 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 4 C -0.11 -2.39 4.74 -26.74 -0.13 -2.52 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.68 -11.77 6.31 -106.72 -0.67 -12.44 16 15 C 0.04 0.53 5.17 -3.82 -0.02 0.51 16 16 C 0.15 2.04 3.25 -27.88 -0.09 1.95 16 17 H 0.12 1.70 7.79 -51.93 -0.40 1.30 16 18 O -0.54 -7.89 12.33 -35.23 -0.43 -8.32 16 19 C -0.14 -1.72 5.07 -104.56 -0.53 -2.25 16 20 C -0.08 -0.85 9.30 -39.59 -0.37 -1.22 16 21 C -0.13 -1.08 10.04 -39.58 -0.40 -1.48 16 22 C -0.10 -0.77 10.04 -39.59 -0.40 -1.16 16 23 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 24 C 0.11 1.24 7.24 -39.42 -0.29 0.95 16 25 F -0.13 -1.71 16.57 2.25 0.04 -1.68 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.46 6.43 -51.93 -0.33 0.12 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.36 6.95 5.86 -39.29 -0.23 6.72 16 35 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 36 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 37 H 0.37 4.43 7.33 45.56 0.33 4.76 16 38 H 0.13 1.18 6.41 -52.49 -0.34 0.84 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -31.03 341.18 -8.69 -39.72 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.49 Total: 7.36 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.99 Total: -20.62 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.06 Total: -38.36 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.43 Total: -8.32 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.03 -8.69 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.964 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds